HEADER IMMUNE SYSTEM 27-JAN-24 8VU1 TITLE STRUCTURE OF FABS1CE3-EPR-1, AN ELBOW-LOCKED HIGH AFFINITY ANTIBODY TITLE 2 FOR THE ERYTHROPOEITIN RECEPTOR (TRIGONAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: S1CE3 VARIANT OF FAB-EPR-1 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: FAB PRODUCED BY RANDOMIZATION OF CDR REGIONS AND COMPND 7 COMPND 7 SELECTED BY PHAGE DISPLAY. FABS UTILIZE IMGT (LECLERC ET COMPND 8 AL., DEV COMPND 8 COMP IMMUNOL. 2003 JAN;27(1):55-77) NUMBERING; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: S1CE3 VARIANT OF FAB-EPR-1 LIGHT CHAIN; COMPND 11 CHAIN: G; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: FAB PRODUCED BY RANDOMIZATION OF CDR REGIONS AND COMPND 14 COMPND 7 SELECTED BY PHAGE DISPLAY. FABS UTILIZE IMGT (LECLERC ET COMPND 15 AL., DEV COMPND 8 COMP IMMUNOL. 2003 JAN;27(1):55-77) NUMBERING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PSCSTA; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: EXPI293; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS PROLIFERATION, ENGINEERED ANTIBODY, HIGH-AFFINITY BINDING, ENHANCED KEYWDS 2 CRYSTALLIZATION, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.U.SINGER,H.A.BRUCE,A.PAVLENCO,L.PLODER,G.LUU,L.BLAZER,J.J.ADAMS, AUTHOR 2 S.S.SIDHU REVDAT 1 10-JUL-24 8VU1 0 JRNL AUTH H.A.BRUCE,A.U.SINGER,L.L.BLAZER,K.LUU,L.PLODER,A.PAVLENCO, JRNL AUTH 2 I.KURINOV,J.J.ADAMS,S.S.SIDHU JRNL TITL ANTIGEN-BINDING FRAGMENTS WITH IMPROVED CRYSTAL LATTICE JRNL TITL 2 PACKING AND ENHANCED CONFORMATIONAL FLEXIBILITY AT THE ELBOW JRNL TITL 3 REGION AS CRYSTALLIZATION CHAPERONES. JRNL REF PROTEIN SCI. V. 33 E5081 2024 JRNL REFN ESSN 1469-896X JRNL PMID 38924648 JRNL DOI 10.1002/PRO.5081 REMARK 2 REMARK 2 RESOLUTION. 3.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 63.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 468 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 63.7500 - 4.4400 1.00 3108 149 0.1965 0.2391 REMARK 3 2 4.4400 - 3.5300 1.00 2937 162 0.2813 0.3168 REMARK 3 3 3.5300 - 3.0800 1.00 2911 157 0.3722 0.3753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.421 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 120.2 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 118.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3223 REMARK 3 ANGLE : 0.633 4409 REMARK 3 CHIRALITY : 0.046 509 REMARK 3 PLANARITY : 0.020 565 REMARK 3 DIHEDRAL : 16.350 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.5591 14.2795 3.1083 REMARK 3 T TENSOR REMARK 3 T11: 0.9650 T22: 0.7905 REMARK 3 T33: 0.7571 T12: -0.0239 REMARK 3 T13: 0.1646 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 8.5005 L22: 7.6568 REMARK 3 L33: 9.1166 L12: -2.4086 REMARK 3 L13: 0.2161 L23: 3.9307 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: 0.2264 S13: -0.6873 REMARK 3 S21: -0.3876 S22: -0.1072 S23: -0.1567 REMARK 3 S31: 0.8613 S32: 0.0518 S33: 0.3051 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4155 26.0778 -7.0791 REMARK 3 T TENSOR REMARK 3 T11: 1.0896 T22: 1.8927 REMARK 3 T33: 1.4220 T12: 0.0805 REMARK 3 T13: 0.2916 T23: 0.0122 REMARK 3 L TENSOR REMARK 3 L11: 0.0720 L22: 0.0994 REMARK 3 L33: 0.0250 L12: 0.1219 REMARK 3 L13: -0.0538 L23: -0.0570 REMARK 3 S TENSOR REMARK 3 S11: -0.0067 S12: -1.0000 S13: -0.3434 REMARK 3 S21: 0.4190 S22: -1.3312 S23: 0.1029 REMARK 3 S31: -0.8148 S32: 1.6729 S33: 0.8147 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3231 27.7753 -27.1568 REMARK 3 T TENSOR REMARK 3 T11: 0.5261 T22: 1.0069 REMARK 3 T33: 0.8632 T12: 0.0475 REMARK 3 T13: 0.0311 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.2149 L22: 6.9764 REMARK 3 L33: 8.7282 L12: 1.3181 REMARK 3 L13: 3.8808 L23: 1.7006 REMARK 3 S TENSOR REMARK 3 S11: 0.0110 S12: 0.2313 S13: -0.2194 REMARK 3 S21: -0.3177 S22: 0.3834 S23: 0.2202 REMARK 3 S31: -0.2620 S32: -0.0758 S33: -0.4114 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 2 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2923 -4.1017 -9.6839 REMARK 3 T TENSOR REMARK 3 T11: 1.0528 T22: 1.2511 REMARK 3 T33: 1.0563 T12: 0.0722 REMARK 3 T13: -0.1015 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.9607 L22: 6.4832 REMARK 3 L33: 2.9179 L12: 1.0766 REMARK 3 L13: 0.3121 L23: 0.3757 REMARK 3 S TENSOR REMARK 3 S11: -0.1500 S12: -0.5317 S13: -0.2447 REMARK 3 S21: 0.6887 S22: -0.1346 S23: -0.5532 REMARK 3 S31: 0.3517 S32: 0.2026 S33: -0.0036 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 92 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0371 4.1656 -11.5797 REMARK 3 T TENSOR REMARK 3 T11: 0.7687 T22: 1.2009 REMARK 3 T33: 0.9346 T12: -0.0337 REMARK 3 T13: -0.1707 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 1.7018 L22: 6.6466 REMARK 3 L33: 1.8097 L12: 0.0549 REMARK 3 L13: -0.0997 L23: -0.5097 REMARK 3 S TENSOR REMARK 3 S11: 0.1666 S12: -0.8532 S13: 0.0983 REMARK 3 S21: 0.4310 S22: -0.3716 S23: -0.5024 REMARK 3 S31: -0.0551 S32: 0.6833 S33: -0.0067 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 134 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1489 33.9717 -20.6332 REMARK 3 T TENSOR REMARK 3 T11: 0.6983 T22: 1.2484 REMARK 3 T33: 0.9184 T12: -0.0002 REMARK 3 T13: 0.0284 T23: -0.1736 REMARK 3 L TENSOR REMARK 3 L11: 4.0277 L22: 8.3447 REMARK 3 L33: 3.6102 L12: 1.0957 REMARK 3 L13: 0.0433 L23: -0.8345 REMARK 3 S TENSOR REMARK 3 S11: -0.1152 S12: 0.3599 S13: -0.3487 REMARK 3 S21: 0.1702 S22: -0.1887 S23: 0.4157 REMARK 3 S31: -0.3201 S32: -0.1505 S33: -0.0703 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 171 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5068 35.8258 -18.4476 REMARK 3 T TENSOR REMARK 3 T11: 0.8838 T22: 1.1705 REMARK 3 T33: 0.9265 T12: -0.0237 REMARK 3 T13: 0.0491 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 5.4841 L22: 2.4849 REMARK 3 L33: 2.9869 L12: 0.7899 REMARK 3 L13: 0.6243 L23: -1.1025 REMARK 3 S TENSOR REMARK 3 S11: -0.1036 S12: -0.5717 S13: 0.4523 REMARK 3 S21: 0.6322 S22: 0.1818 S23: 0.0362 REMARK 3 S31: -0.5080 S32: -0.0401 S33: -0.0924 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000280015. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10941 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.930 REMARK 200 RESOLUTION RANGE LOW (A) : 153.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 2.38400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCPT BUFFER PH 9.0, 25% PEG1500, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.29533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.59067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.59067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.29533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 231 REMARK 465 LYS A 232 REMARK 465 THR A 233 REMARK 465 HIS A 234 REMARK 465 THR A 235 REMARK 465 ASP G 1 REMARK 465 CYS G 232 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 1 CG CD OE1 OE2 REMARK 470 LEU A 12 CG CD1 CD2 REMARK 470 ARG A 35 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 TYR A 62 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 84 CD CE NZ REMARK 470 PHE A 127 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 128 CG OD1 ND2 REMARK 470 GLN A 129 CG CD OE1 NE2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 LYS A 215 CD CE NZ REMARK 470 LYS A 220 CD CE NZ REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ARG G 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 48 CG CD CE NZ REMARK 470 LYS G 51 CD CE NZ REMARK 470 TYR G 109 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU G 115 CG CD1 CD2 REMARK 470 GLN G 120 CD OE1 NE2 REMARK 470 LYS G 123 CG CD CE NZ REMARK 470 LYS G 146 CG CD CE NZ REMARK 470 LYS G 165 CG CD CE NZ REMARK 470 GLU G 185 CG CD OE1 OE2 REMARK 470 LYS G 189 CG CD CE NZ REMARK 470 LYS G 208 CG CD CE NZ REMARK 470 LYS G 210 CG CD CE NZ REMARK 470 GLU G 231 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 46 108.02 -44.17 REMARK 500 LYS A 48 -166.80 -106.00 REMARK 500 VAL A 53 -62.08 -102.79 REMARK 500 SER A 141 -155.88 -146.25 REMARK 500 SER A 144 50.57 -68.32 REMARK 500 SER G 36 -171.17 65.77 REMARK 500 SER G 56 19.95 56.92 REMARK 500 ALA G 57 -8.37 72.87 REMARK 500 SER G 65 -37.38 -133.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 43 0.27 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8VU1 A 1 235 PDB 8VU1 8VU1 1 235 DBREF 8VU1 G 1 232 PDB 8VU1 8VU1 1 232 SEQRES 1 A 224 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 224 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 224 PHE ASN LEU ARG SER TYR TYR MET HIS TRP VAL ARG GLN SEQRES 4 A 224 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA SER ILE SER SEQRES 5 A 224 PRO TYR TYR SER TYR THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 224 GLY ARG PHE THR ILE SER ALA ASP THR SER LYS ASN THR SEQRES 7 A 224 ALA TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 224 ALA VAL TYR TYR CYS ALA ARG HIS GLY TYR GLY ALA MET SEQRES 9 A 224 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL PHE ASN SEQRES 10 A 224 GLN ILE LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 A 224 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 A 224 LEU VAL LYS ASP TYR TRP PRO GLU PRO VAL THR VAL SER SEQRES 13 A 224 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 A 224 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 A 224 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 A 224 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 A 224 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 A 224 THR HIS THR SEQRES 1 G 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 G 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 G 212 GLN SER VAL SER SER ALA VAL ALA TRP TYR GLN GLN LYS SEQRES 4 G 212 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 G 212 SER LEU TYR SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 G 212 ARG SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 G 212 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 G 212 SER TYR SER LEU ILE THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 G 212 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 G 212 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 G 212 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 G 212 ALA LYS VAL SER TRP TYR VAL ASP ASN ALA LEU GLN SER SEQRES 13 G 212 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 G 212 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 G 212 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 G 212 VAL THR GLN GLY THR THR SER VAL THR LYS SER PHE ASN SEQRES 17 G 212 ARG GLY GLU CYS HELIX 1 AA1 ASN A 29 TYR A 37 5 5 HELIX 2 AA2 THR A 82 LYS A 84 5 3 HELIX 3 AA3 SER A 170 ALA A 172 5 3 HELIX 4 AA4 SER A 201 THR A 205 5 5 HELIX 5 AA5 GLN G 95 PHE G 99 5 5 HELIX 6 AA6 SER G 108 LEU G 115 5 4 HELIX 7 AA7 SER G 141 GLY G 148 1 8 HELIX 8 AA8 LYS G 203 LYS G 208 1 6 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 GLY A 16 SER A 26 -1 O ALA A 24 N VAL A 5 SHEET 3 AA1 4 THR A 86 LEU A 94 -1 O LEU A 94 N GLY A 16 SHEET 4 AA1 4 PHE A 76 ASP A 81 -1 N SER A 79 O TYR A 88 SHEET 1 AA2 6 LEU A 12 VAL A 13 0 SHEET 2 AA2 6 THR A 122 VAL A 126 1 O THR A 125 N VAL A 13 SHEET 3 AA2 6 ALA A 100 GLY A 108 -1 N TYR A 102 O THR A 122 SHEET 4 AA2 6 MET A 39 GLN A 44 -1 N VAL A 42 O TYR A 103 SHEET 5 AA2 6 LEU A 50 ILE A 56 -1 O GLU A 51 N ARG A 43 SHEET 6 AA2 6 THR A 65 TYR A 67 -1 O TYR A 66 N SER A 55 SHEET 1 AA3 4 LEU A 12 VAL A 13 0 SHEET 2 AA3 4 THR A 122 VAL A 126 1 O THR A 125 N VAL A 13 SHEET 3 AA3 4 ALA A 100 GLY A 108 -1 N TYR A 102 O THR A 122 SHEET 4 AA3 4 ALA A 114 TRP A 118 -1 O ALA A 114 N GLY A 108 SHEET 1 AA4 4 SER A 134 LEU A 138 0 SHEET 2 AA4 4 THR A 149 TYR A 159 -1 O GLY A 153 N LEU A 138 SHEET 3 AA4 4 TYR A 190 PRO A 199 -1 O LEU A 192 N VAL A 156 SHEET 4 AA4 4 VAL A 177 THR A 179 -1 N HIS A 178 O VAL A 195 SHEET 1 AA5 4 SER A 134 LEU A 138 0 SHEET 2 AA5 4 THR A 149 TYR A 159 -1 O GLY A 153 N LEU A 138 SHEET 3 AA5 4 TYR A 190 PRO A 199 -1 O LEU A 192 N VAL A 156 SHEET 4 AA5 4 VAL A 183 LEU A 184 -1 N VAL A 183 O SER A 191 SHEET 1 AA6 3 THR A 165 TRP A 168 0 SHEET 2 AA6 3 TYR A 208 HIS A 214 -1 O ASN A 211 N SER A 167 SHEET 3 AA6 3 THR A 219 VAL A 225 -1 O THR A 219 N HIS A 214 SHEET 1 AA7 4 MET G 4 SER G 7 0 SHEET 2 AA7 4 VAL G 19 ALA G 25 -1 O THR G 22 N SER G 7 SHEET 3 AA7 4 ASP G 86 ILE G 91 -1 O PHE G 87 N CYS G 23 SHEET 4 AA7 4 PHE G 76 SER G 83 -1 N SER G 77 O THR G 90 SHEET 1 AA8 6 SER G 10 ALA G 13 0 SHEET 2 AA8 6 THR G 122 ILE G 126 1 O GLU G 125 N LEU G 11 SHEET 3 AA8 6 ALA G 100 GLN G 106 -1 N ALA G 100 O VAL G 124 SHEET 4 AA8 6 VAL G 39 GLN G 44 -1 N ALA G 40 O GLN G 105 SHEET 5 AA8 6 LYS G 51 TYR G 55 -1 O LEU G 53 N TRP G 41 SHEET 6 AA8 6 SER G 66 LEU G 67 -1 O SER G 66 N TYR G 55 SHEET 1 AA9 4 SER G 10 ALA G 13 0 SHEET 2 AA9 4 THR G 122 ILE G 126 1 O GLU G 125 N LEU G 11 SHEET 3 AA9 4 ALA G 100 GLN G 106 -1 N ALA G 100 O VAL G 124 SHEET 4 AA9 4 THR G 117 PHE G 118 -1 O THR G 117 N GLN G 106 SHEET 1 AB1 4 SER G 134 PHE G 138 0 SHEET 2 AB1 4 THR G 149 PHE G 159 -1 O LEU G 155 N PHE G 136 SHEET 3 AB1 4 TYR G 193 SER G 202 -1 O LEU G 201 N ALA G 150 SHEET 4 AB1 4 SER G 179 VAL G 183 -1 N GLN G 180 O THR G 198 SHEET 1 AB2 4 ALA G 173 LEU G 174 0 SHEET 2 AB2 4 LYS G 165 VAL G 170 -1 N VAL G 170 O ALA G 173 SHEET 3 AB2 4 VAL G 211 GLN G 218 -1 O GLU G 215 N SER G 167 SHEET 4 AB2 4 THR G 221 ASN G 228 -1 O LYS G 225 N CYS G 214 SSBOND 1 CYS A 23 CYS A 104 1555 1555 2.03 SSBOND 2 CYS A 154 CYS A 210 1555 1555 2.03 SSBOND 3 CYS G 23 CYS G 104 1555 1555 2.03 SSBOND 4 CYS G 154 CYS G 214 1555 1555 2.03 CISPEP 1 TRP A 160 PRO A 161 0 -6.64 CISPEP 2 GLU A 162 PRO A 163 0 1.66 CISPEP 3 SER G 7 PRO G 8 0 -1.58 CISPEP 4 TYR G 160 PRO G 161 0 1.19 CRYST1 73.608 73.608 153.886 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013585 0.007844 0.000000 0.00000 SCALE2 0.000000 0.015687 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006498 0.00000