data_8VVJ # _entry.id 8VVJ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VVJ pdb_00008vvj 10.2210/pdb8vvj/pdb WWPDB D_1000281105 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-06-11 ? 2 'Structure model' 1 1 2025-08-06 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 2 'Structure model' '_citation_author.name' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VVJ _pdbx_database_status.recvd_initial_deposition_date 2024-01-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name PDB _pdbx_database_related.details 'Structure of the same RNA with a related synthetic ligand' _pdbx_database_related.db_id 8VQV _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email adrian.ferre@gmail.com _pdbx_contact_author.name_first Adrian _pdbx_contact_author.name_last "Ferre-D'Amare" _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4549-1619 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Jones, C.P.' 1 0000-0001-7780-5278 ;Ferre D'Amare, A.R. ; 2 0000-0003-4549-1619 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 64 _citation.language ? _citation.page_first e202505971 _citation.page_last e202505971 _citation.title ;Machine Learning-Augmented Molecular Dynamics Simulations (MD) Reveal Insights Into the Disconnect Between Affinity and Activation of ZTP Riboswitch Ligands. ; _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.202505971 _citation.pdbx_database_id_PubMed 40310613 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fullenkamp, C.R.' 1 ? primary 'Mehdi, S.' 2 ? primary 'Jones, C.P.' 3 ? primary 'Tenney, L.' 4 ? primary 'Pichling, P.' 5 ? primary 'Prestwood, P.R.' 6 ? primary ;Ferre-D'Amare, A.R. ; 7 ? primary 'Tiwary, P.' 8 0000-0002-2412-6922 primary 'Schneekloth, J.S.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RNA (64-MER)' 20782.453 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 non-polymer syn '(1M)-5-amino-1-(1,8-naphthyridin-3-yl)-1H-imidazole-4-carboxamide' 254.247 1 ? ? ? ? 4 water nat water 18.015 76 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA _entity_poly.pdbx_seq_one_letter_code_can GGGUCGUGACUGGCGAACAGGUGGGAAACCACCGGGGAGCGACCCUUGCCGCCCGCCUGGGCAA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 '(1M)-5-amino-1-(1,8-naphthyridin-3-yl)-1H-imidazole-4-carboxamide' A1AD3 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 U n 1 5 C n 1 6 G n 1 7 U n 1 8 G n 1 9 A n 1 10 C n 1 11 U n 1 12 G n 1 13 G n 1 14 C n 1 15 G n 1 16 A n 1 17 A n 1 18 C n 1 19 A n 1 20 G n 1 21 G n 1 22 U n 1 23 G n 1 24 G n 1 25 G n 1 26 A n 1 27 A n 1 28 A n 1 29 C n 1 30 C n 1 31 A n 1 32 C n 1 33 C n 1 34 G n 1 35 G n 1 36 G n 1 37 G n 1 38 A n 1 39 G n 1 40 C n 1 41 G n 1 42 A n 1 43 C n 1 44 C n 1 45 C n 1 46 U n 1 47 U n 1 48 G n 1 49 C n 1 50 C n 1 51 G n 1 52 C n 1 53 C n 1 54 C n 1 55 G n 1 56 C n 1 57 C n 1 58 U n 1 59 G n 1 60 G n 1 61 G n 1 62 C n 1 63 A n 1 64 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 64 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schaalia odontolytica' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1660 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 A1AD3 non-polymer . '(1M)-5-amino-1-(1,8-naphthyridin-3-yl)-1H-imidazole-4-carboxamide' ? 'C12 H10 N6 O' 254.247 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 G 3 3 3 G G A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 A 17 17 17 A A A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 G 20 20 20 G G A . n A 1 21 G 21 21 21 G G A . n A 1 22 U 22 22 22 U U A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 G 34 34 34 G G A . n A 1 35 G 35 35 35 G G A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 G 39 39 39 G G A . n A 1 40 C 40 40 40 C C A . n A 1 41 G 41 41 41 G G A . n A 1 42 A 42 42 42 A A A . n A 1 43 C 43 43 43 C C A . n A 1 44 C 44 44 44 C C A . n A 1 45 C 45 45 45 C C A . n A 1 46 U 46 46 46 U U A . n A 1 47 U 47 47 47 U U A . n A 1 48 G 48 48 48 G G A . n A 1 49 C 49 49 49 C C A . n A 1 50 C 50 50 50 C C A . n A 1 51 G 51 51 51 G G A . n A 1 52 C 52 52 52 C C A . n A 1 53 C 53 53 53 C C A . n A 1 54 C 54 54 54 C C A . n A 1 55 G 55 55 55 G G A . n A 1 56 C 56 56 56 C C A . n A 1 57 C 57 57 57 C C A . n A 1 58 U 58 58 58 U U A . n A 1 59 G 59 59 59 G G A . n A 1 60 G 60 60 60 G G A . n A 1 61 G 61 61 61 G G A . n A 1 62 C 62 62 62 C C A . n A 1 63 A 63 63 63 A A A . n A 1 64 A 64 64 64 A A A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id A1AD3 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id A1AD3 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 101 2 MG MG A . C 2 MG 1 102 3 MG MG A . D 2 MG 1 103 1 MG MO6 A . E 3 A1AD3 1 104 1 A1AD3 A12 A . F 4 HOH 1 201 50 HOH HOH A . F 4 HOH 2 202 71 HOH HOH A . F 4 HOH 3 203 72 HOH HOH A . F 4 HOH 4 204 30 HOH HOH A . F 4 HOH 5 205 60 HOH HOH A . F 4 HOH 6 206 59 HOH HOH A . F 4 HOH 7 207 45 HOH HOH A . F 4 HOH 8 208 46 HOH HOH A . F 4 HOH 9 209 65 HOH HOH A . F 4 HOH 10 210 39 HOH HOH A . F 4 HOH 11 211 17 HOH HOH A . F 4 HOH 12 212 44 HOH HOH A . F 4 HOH 13 213 4 HOH HOH A . F 4 HOH 14 214 61 HOH HOH A . F 4 HOH 15 215 47 HOH HOH A . F 4 HOH 16 216 68 HOH HOH A . F 4 HOH 17 217 26 HOH HOH A . F 4 HOH 18 218 62 HOH HOH A . F 4 HOH 19 219 52 HOH HOH A . F 4 HOH 20 220 64 HOH HOH A . F 4 HOH 21 221 37 HOH HOH A . F 4 HOH 22 222 7 HOH HOH A . F 4 HOH 23 223 63 HOH HOH A . F 4 HOH 24 224 36 HOH HOH A . F 4 HOH 25 225 13 HOH HOH A . F 4 HOH 26 226 1 HOH MO6 A . F 4 HOH 27 227 22 HOH HOH A . F 4 HOH 28 228 15 HOH HOH A . F 4 HOH 29 229 18 HOH HOH A . F 4 HOH 30 230 12 HOH HOH A . F 4 HOH 31 231 1 HOH MO6 A . F 4 HOH 32 232 31 HOH HOH A . F 4 HOH 33 233 49 HOH HOH A . F 4 HOH 34 234 24 HOH HOH A . F 4 HOH 35 235 10 HOH HOH A . F 4 HOH 36 236 3 HOH HOH A . F 4 HOH 37 237 33 HOH HOH A . F 4 HOH 38 238 1 HOH MO6 A . F 4 HOH 39 239 32 HOH HOH A . F 4 HOH 40 240 11 HOH HOH A . F 4 HOH 41 241 2 HOH HOH A . F 4 HOH 42 242 14 HOH HOH A . F 4 HOH 43 243 67 HOH HOH A . F 4 HOH 44 244 48 HOH HOH A . F 4 HOH 45 245 25 HOH HOH A . F 4 HOH 46 246 70 HOH HOH A . F 4 HOH 47 247 6 HOH HOH A . F 4 HOH 48 248 28 HOH HOH A . F 4 HOH 49 249 19 HOH HOH A . F 4 HOH 50 250 27 HOH HOH A . F 4 HOH 51 251 1 HOH MO6 A . F 4 HOH 52 252 5 HOH HOH A . F 4 HOH 53 253 41 HOH HOH A . F 4 HOH 54 254 35 HOH HOH A . F 4 HOH 55 255 38 HOH HOH A . F 4 HOH 56 256 56 HOH HOH A . F 4 HOH 57 257 16 HOH HOH A . F 4 HOH 58 258 53 HOH HOH A . F 4 HOH 59 259 1 HOH MO6 A . F 4 HOH 60 260 69 HOH HOH A . F 4 HOH 61 261 21 HOH HOH A . F 4 HOH 62 262 54 HOH HOH A . F 4 HOH 63 263 23 HOH HOH A . F 4 HOH 64 264 57 HOH HOH A . F 4 HOH 65 265 8 HOH HOH A . F 4 HOH 66 266 74 HOH HOH A . F 4 HOH 67 267 1 HOH HOH A . F 4 HOH 68 268 29 HOH HOH A . F 4 HOH 69 269 58 HOH HOH A . F 4 HOH 70 270 43 HOH HOH A . F 4 HOH 71 271 40 HOH HOH A . F 4 HOH 72 272 66 HOH HOH A . F 4 HOH 73 273 42 HOH HOH A . F 4 HOH 74 274 55 HOH HOH A . F 4 HOH 75 275 73 HOH HOH A . F 4 HOH 76 276 1 HOH MO6 A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.19.2_4158: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 120.00 _cell.angle_gamma_esd ? _cell.entry_id 8VVJ _cell.details ? _cell.formula_units_Z ? _cell.length_a 118.247 _cell.length_a_esd ? _cell.length_b 118.247 _cell.length_b_esd ? _cell.length_c 202.054 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VVJ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '125-300 mM lithium sulfate, 23-27% PEG 3350, 0.1 M Hepes pH 7.5' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 294 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-02-26 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9792 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9792 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8VVJ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.15 _reflns.d_resolution_low 101.03 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 85958 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.89 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 39.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 12.41 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half .997 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs .2546 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.15 _reflns_shell.d_res_low 2.227 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 4513 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half .831 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 2.508 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8VVJ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.15 _refine.ls_d_res_low 101.03 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 85958 _refine.ls_number_reflns_R_free 2937 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.90 _refine.ls_percent_reflns_R_free 3.42 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.3126 _refine.ls_R_factor_R_free 0.3339 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.3118 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 39.31 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.43 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.15 _refine_hist.d_res_low 101.03 _refine_hist.number_atoms_solvent 70 _refine_hist.number_atoms_total 1474 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1376 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1567 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.918 ? 2448 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 12.233 ? 766 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.039 ? 319 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 67 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.15 2.19 . . 141 3963 100.00 . . . . 0.4117 . . . . . . . . . . . 0.4777 'X-RAY DIFFRACTION' 2.19 2.22 . . 138 3931 100.00 . . . . 0.3983 . . . . . . . . . . . 0.3203 'X-RAY DIFFRACTION' 2.22 2.26 . . 140 3927 100.00 . . . . 0.4150 . . . . . . . . . . . 0.3814 'X-RAY DIFFRACTION' 2.26 2.31 . . 138 3983 100.00 . . . . 0.3719 . . . . . . . . . . . 0.3957 'X-RAY DIFFRACTION' 2.31 2.35 . . 143 3956 100.00 . . . . 0.3517 . . . . . . . . . . . 0.3597 'X-RAY DIFFRACTION' 2.35 2.41 . . 139 3977 100.00 . . . . 0.3441 . . . . . . . . . . . 0.3633 'X-RAY DIFFRACTION' 2.41 2.46 . . 145 3957 100.00 . . . . 0.3558 . . . . . . . . . . . 0.4166 'X-RAY DIFFRACTION' 2.46 2.52 . . 144 3947 100.00 . . . . 0.3574 . . . . . . . . . . . 0.4112 'X-RAY DIFFRACTION' 2.52 2.59 . . 139 3923 100.00 . . . . 0.3671 . . . . . . . . . . . 0.4002 'X-RAY DIFFRACTION' 2.59 2.67 . . 141 3943 100.00 . . . . 0.3748 . . . . . . . . . . . 0.3836 'X-RAY DIFFRACTION' 2.67 2.75 . . 139 3989 100.00 . . . . 0.3913 . . . . . . . . . . . 0.4328 'X-RAY DIFFRACTION' 2.75 2.85 . . 139 3936 100.00 . . . . 0.4005 . . . . . . . . . . . 0.4642 'X-RAY DIFFRACTION' 2.85 2.97 . . 140 3961 100.00 . . . . 0.3646 . . . . . . . . . . . 0.3202 'X-RAY DIFFRACTION' 2.97 3.10 . . 138 3943 100.00 . . . . 0.3069 . . . . . . . . . . . 0.3585 'X-RAY DIFFRACTION' 3.10 3.26 . . 139 3954 100.00 . . . . 0.2866 . . . . . . . . . . . 0.3075 'X-RAY DIFFRACTION' 3.26 3.47 . . 133 3942 100.00 . . . . 0.2706 . . . . . . . . . . . 0.3026 'X-RAY DIFFRACTION' 3.47 3.74 . . 146 3935 100.00 . . . . 0.2634 . . . . . . . . . . . 0.2808 'X-RAY DIFFRACTION' 3.74 4.11 . . 138 3955 100.00 . . . . 0.2972 . . . . . . . . . . . 0.3110 'X-RAY DIFFRACTION' 4.11 4.71 . . 137 3966 100.00 . . . . 0.3021 . . . . . . . . . . . 0.3522 'X-RAY DIFFRACTION' 4.71 5.93 . . 140 3964 100.00 . . . . 0.2691 . . . . . . . . . . . 0.2788 'X-RAY DIFFRACTION' 5.93 101.03 . . 140 3969 100.00 . . . . 0.2702 . . . . . . . . . . . 0.2858 # _struct.entry_id 8VVJ _struct.title 'Structure of S. odontolytica ZTP riboswitch bound to m-1-pyridinyl-AICA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VVJ _struct_keywords.text 'riboswitch, drug, synthetic, aptamer, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8VVJ _struct_ref.pdbx_db_accession 8VVJ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8VVJ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 64 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8VVJ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 64 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 64 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6090 ? 1 MORE -86 ? 1 'SSA (A^2)' 19320 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1.0000000000 0.0000000000 0.0000000000 118.2470000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A U 11 OP1 ? ? ? 1_555 C MG . MG ? ? A U 11 A MG 102 4_655 ? ? ? ? ? ? ? 2.062 ? ? metalc2 metalc ? ? A G 15 OP2 ? ? ? 1_555 B MG . MG ? ? A G 15 A MG 101 1_555 ? ? ? ? ? ? ? 2.246 ? ? metalc3 metalc ? ? A A 19 OP2 ? ? ? 1_555 B MG . MG ? ? A A 19 A MG 101 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc4 metalc ? ? A C 29 OP2 ? ? ? 1_555 C MG . MG ? ? A C 29 A MG 102 4_655 ? ? ? ? ? ? ? 1.919 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 217 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 234 1_555 ? ? ? ? ? ? ? 2.334 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 245 1_555 ? ? ? ? ? ? ? 2.504 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 267 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc9 metalc ? ? C MG . MG ? ? ? 1_555 E A1AD3 . O03 ? ? A MG 102 A A1AD3 104 1_555 ? ? ? ? ? ? ? 1.825 ? ? metalc10 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 225 4_655 ? ? ? ? ? ? ? 1.888 ? ? metalc11 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 228 1_555 ? ? ? ? ? ? ? 2.189 ? ? metalc12 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 102 A HOH 242 4_655 ? ? ? ? ? ? ? 2.212 ? ? metalc13 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 226 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 231 1_555 ? ? ? ? ? ? ? 2.164 ? ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 238 1_555 ? ? ? ? ? ? ? 2.162 ? ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 251 1_555 ? ? ? ? ? ? ? 2.185 ? ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 259 1_555 ? ? ? ? ? ? ? 2.179 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 103 A HOH 276 1_555 ? ? ? ? ? ? ? 2.172 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 1 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 2 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 3 A C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 42 N1 ? ? A U 4 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 42 N6 ? ? A U 4 A A 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 5 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 5 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 5 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 6 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 7 N3 ? ? ? 1_555 A G 39 O6 ? ? A U 7 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A U 7 O2 ? ? ? 1_555 A G 39 N1 ? ? A U 7 A G 39 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 38 N7 ? ? A G 8 A A 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 38 N6 ? ? A G 8 A A 38 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A G 37 N3 ? ? A A 9 A G 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A G 37 N2 ? ? A A 9 A G 37 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog24 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 10 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 10 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 10 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A G 35 O6 ? ? A U 11 A G 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A U 11 O2 ? ? ? 1_555 A G 35 N1 ? ? A U 11 A G 35 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog29 hydrog ? ? A G 12 N2 ? ? ? 1_555 A A 28 N3 ? ? A G 12 A A 28 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 20 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 20 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 20 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 20 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 20 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 20 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 21 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 21 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 21 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 21 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 21 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 21 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A U 22 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 22 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 22 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 22 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 23 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 23 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 23 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 23 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 23 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 23 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 24 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 24 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 24 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 46 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 46 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A U 46 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 46 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A U 47 N3 ? ? ? 1_555 A A 63 N1 ? ? A U 47 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A U 47 O4 ? ? ? 1_555 A A 63 N6 ? ? A U 47 A A 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 48 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 48 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A G 48 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 48 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 48 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 48 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 49 N3 ? ? ? 1_555 A G 61 N1 ? ? A C 49 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A C 49 N4 ? ? ? 1_555 A G 61 O6 ? ? A C 49 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A C 49 O2 ? ? ? 1_555 A G 61 N2 ? ? A C 49 A G 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 50 N3 ? ? ? 1_555 A G 60 N1 ? ? A C 50 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 50 N4 ? ? ? 1_555 A G 60 O6 ? ? A C 50 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 50 O2 ? ? ? 1_555 A G 60 N2 ? ? A C 50 A G 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 51 O6 ? ? ? 1_555 A G 59 N1 ? ? A G 51 A G 59 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog58 hydrog ? ? A G 51 O6 ? ? ? 1_555 A G 60 N1 ? ? A G 51 A G 60 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 OP2 ? A C 29 ? A C 29 ? 1_555 163.2 ? 2 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O03 ? E A1AD3 . ? A A1AD3 104 ? 1_555 21.0 ? 3 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O03 ? E A1AD3 . ? A A1AD3 104 ? 1_555 145.5 ? 4 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 225 ? 4_655 20.2 ? 5 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 225 ? 4_655 144.9 ? 6 O03 ? E A1AD3 . ? A A1AD3 104 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 225 ? 4_655 4.0 ? 7 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 228 ? 1_555 18.5 ? 8 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 228 ? 1_555 147.3 ? 9 O03 ? E A1AD3 . ? A A1AD3 104 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 228 ? 1_555 2.8 ? 10 O ? F HOH . ? A HOH 225 ? 4_655 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 228 ? 1_555 2.9 ? 11 OP1 ? A U 11 ? A U 11 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 242 ? 4_655 22.6 ? 12 OP2 ? A C 29 ? A C 29 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 242 ? 4_655 143.0 ? 13 O03 ? E A1AD3 . ? A A1AD3 104 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 242 ? 4_655 3.1 ? 14 O ? F HOH . ? A HOH 225 ? 4_655 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 242 ? 4_655 2.9 ? 15 O ? F HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 102 ? 4_655 O ? F HOH . ? A HOH 242 ? 4_655 4.3 ? 16 OP2 ? A G 15 ? A G 15 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 OP2 ? A A 19 ? A A 19 ? 1_555 151.2 ? 17 OP2 ? A G 15 ? A G 15 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 217 ? 1_555 71.9 ? 18 OP2 ? A A 19 ? A A 19 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 217 ? 1_555 89.2 ? 19 OP2 ? A G 15 ? A G 15 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 234 ? 1_555 107.2 ? 20 OP2 ? A A 19 ? A A 19 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 234 ? 1_555 95.1 ? 21 O ? F HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 234 ? 1_555 93.3 ? 22 OP2 ? A G 15 ? A G 15 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 245 ? 1_555 75.9 ? 23 OP2 ? A A 19 ? A A 19 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 245 ? 1_555 79.1 ? 24 O ? F HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 245 ? 1_555 78.1 ? 25 O ? F HOH . ? A HOH 234 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 245 ? 1_555 169.7 ? 26 OP2 ? A G 15 ? A G 15 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 267 ? 1_555 99.7 ? 27 OP2 ? A A 19 ? A A 19 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 267 ? 1_555 91.7 ? 28 O ? F HOH . ? A HOH 217 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 267 ? 1_555 161.8 ? 29 O ? F HOH . ? A HOH 234 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 267 ? 1_555 104.7 ? 30 O ? F HOH . ? A HOH 245 ? 1_555 MG ? B MG . ? A MG 101 ? 1_555 O ? F HOH . ? A HOH 267 ? 1_555 84.2 ? 31 O ? F HOH . ? A HOH 226 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 231 ? 1_555 178.2 ? 32 O ? F HOH . ? A HOH 226 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 238 ? 1_555 91.0 ? 33 O ? F HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 238 ? 1_555 88.4 ? 34 O ? F HOH . ? A HOH 226 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 251 ? 1_555 88.5 ? 35 O ? F HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 251 ? 1_555 89.8 ? 36 O ? F HOH . ? A HOH 238 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 251 ? 1_555 92.0 ? 37 O ? F HOH . ? A HOH 226 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 259 ? 1_555 91.4 ? 38 O ? F HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 259 ? 1_555 90.3 ? 39 O ? F HOH . ? A HOH 238 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 259 ? 1_555 85.9 ? 40 O ? F HOH . ? A HOH 251 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 259 ? 1_555 177.9 ? 41 O ? F HOH . ? A HOH 226 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 276 ? 1_555 89.5 ? 42 O ? F HOH . ? A HOH 231 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 276 ? 1_555 91.2 ? 43 O ? F HOH . ? A HOH 238 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 276 ? 1_555 175.1 ? 44 O ? F HOH . ? A HOH 251 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 276 ? 1_555 92.9 ? 45 O ? F HOH . ? A HOH 259 ? 1_555 MG ? D MG . ? A MG 103 ? 1_555 O ? F HOH . ? A HOH 276 ? 1_555 89.2 ? # _pdbx_entry_details.entry_id 8VVJ _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[1][1]_esd _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][2]_esd _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[1][3]_esd _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[2][2]_esd _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.T[2][3]_esd _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[3][3]_esd _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[1][1]_esd _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][2]_esd _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[1][3]_esd _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[2][2]_esd _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.L[2][3]_esd _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[3][3]_esd _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][1]_esd _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][2]_esd _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[1][3]_esd _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][1]_esd _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][2]_esd _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][3]_esd _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][1]_esd _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][2]_esd _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[3][3]_esd 1 'X-RAY DIFFRACTION' ? refined 49.6759 -11.4142 18.6035 0.2215 ? 0.0467 ? 0.0986 ? 0.7126 ? -0.0457 ? 1.0835 ? 5.7901 ? -3.3329 ? -4.0624 ? 3.8376 ? 1.6129 ? 3.5545 ? -1.3544 ? -0.2080 ? -1.5250 ? 1.0463 ? 0.5493 ? -0.1844 ? 0.8359 ? 0.5367 ? 0.6067 ? 2 'X-RAY DIFFRACTION' ? refined 31.6836 -3.3884 19.4617 0.1887 ? 0.0325 ? -0.0016 ? 0.2966 ? -0.0044 ? 0.3752 ? 0.4653 ? 0.4925 ? -0.2795 ? 2.7769 ? -0.4167 ? 2.4350 ? -0.0895 ? -0.0732 ? -0.1812 ? -0.0596 ? 0.0050 ? -0.2399 ? 0.1694 ? 0.2158 ? -0.0507 ? 3 'X-RAY DIFFRACTION' ? refined 78.8135 -4.8521 11.6280 0.3029 ? -0.1098 ? -0.0094 ? 0.4533 ? 0.0071 ? 0.5519 ? 1.8541 ? -1.7439 ? -0.2990 ? 2.3544 ? 0.6066 ? 2.9443 ? -0.1297 ? 0.0231 ? -0.2493 ? -0.1615 ? -0.0547 ? 0.6933 ? 0.1278 ? -0.4605 ? 0.1045 ? # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_PDB_ins_code _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_PDB_ins_code _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 1 'X-RAY DIFFRACTION' 1 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 10 ) ; 2 'X-RAY DIFFRACTION' 2 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 11 through 45 ) ; 3 'X-RAY DIFFRACTION' 3 ? ? ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 46 through 64 ) ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 A1AD3 C02 C N N 38 A1AD3 C04 C Y N 39 A1AD3 C06 C Y N 40 A1AD3 C08 C Y N 41 A1AD3 C09 C Y N 42 A1AD3 C11 C Y N 43 A1AD3 C13 C Y N 44 A1AD3 C14 C Y N 45 A1AD3 C15 C Y N 46 A1AD3 C16 C Y N 47 A1AD3 C17 C Y N 48 A1AD3 C18 C Y N 49 A1AD3 N01 N N N 50 A1AD3 N05 N Y N 51 A1AD3 N07 N Y N 52 A1AD3 N10 N Y N 53 A1AD3 N12 N Y N 54 A1AD3 N19 N N N 55 A1AD3 O03 O N N 56 A1AD3 H1 H N N 57 A1AD3 H2 H N N 58 A1AD3 H3 H N N 59 A1AD3 H4 H N N 60 A1AD3 H5 H N N 61 A1AD3 H6 H N N 62 A1AD3 H7 H N N 63 A1AD3 H8 H N N 64 A1AD3 H9 H N N 65 A1AD3 H10 H N N 66 C OP3 O N N 67 C P P N N 68 C OP1 O N N 69 C OP2 O N N 70 C "O5'" O N N 71 C "C5'" C N N 72 C "C4'" C N R 73 C "O4'" O N N 74 C "C3'" C N S 75 C "O3'" O N N 76 C "C2'" C N R 77 C "O2'" O N N 78 C "C1'" C N R 79 C N1 N N N 80 C C2 C N N 81 C O2 O N N 82 C N3 N N N 83 C C4 C N N 84 C N4 N N N 85 C C5 C N N 86 C C6 C N N 87 C HOP3 H N N 88 C HOP2 H N N 89 C "H5'" H N N 90 C "H5''" H N N 91 C "H4'" H N N 92 C "H3'" H N N 93 C "HO3'" H N N 94 C "H2'" H N N 95 C "HO2'" H N N 96 C "H1'" H N N 97 C H41 H N N 98 C H42 H N N 99 C H5 H N N 100 C H6 H N N 101 G OP3 O N N 102 G P P N N 103 G OP1 O N N 104 G OP2 O N N 105 G "O5'" O N N 106 G "C5'" C N N 107 G "C4'" C N R 108 G "O4'" O N N 109 G "C3'" C N S 110 G "O3'" O N N 111 G "C2'" C N R 112 G "O2'" O N N 113 G "C1'" C N R 114 G N9 N Y N 115 G C8 C Y N 116 G N7 N Y N 117 G C5 C Y N 118 G C6 C N N 119 G O6 O N N 120 G N1 N N N 121 G C2 C N N 122 G N2 N N N 123 G N3 N N N 124 G C4 C Y N 125 G HOP3 H N N 126 G HOP2 H N N 127 G "H5'" H N N 128 G "H5''" H N N 129 G "H4'" H N N 130 G "H3'" H N N 131 G "HO3'" H N N 132 G "H2'" H N N 133 G "HO2'" H N N 134 G "H1'" H N N 135 G H8 H N N 136 G H1 H N N 137 G H21 H N N 138 G H22 H N N 139 HOH O O N N 140 HOH H1 H N N 141 HOH H2 H N N 142 MG MG MG N N 143 U OP3 O N N 144 U P P N N 145 U OP1 O N N 146 U OP2 O N N 147 U "O5'" O N N 148 U "C5'" C N N 149 U "C4'" C N R 150 U "O4'" O N N 151 U "C3'" C N S 152 U "O3'" O N N 153 U "C2'" C N R 154 U "O2'" O N N 155 U "C1'" C N R 156 U N1 N N N 157 U C2 C N N 158 U O2 O N N 159 U N3 N N N 160 U C4 C N N 161 U O4 O N N 162 U C5 C N N 163 U C6 C N N 164 U HOP3 H N N 165 U HOP2 H N N 166 U "H5'" H N N 167 U "H5''" H N N 168 U "H4'" H N N 169 U "H3'" H N N 170 U "HO3'" H N N 171 U "H2'" H N N 172 U "HO2'" H N N 173 U "H1'" H N N 174 U H3 H N N 175 U H5 H N N 176 U H6 H N N 177 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 A1AD3 C14 C13 doub Y N 40 A1AD3 C14 C15 sing Y N 41 A1AD3 C13 N12 sing Y N 42 A1AD3 C15 C16 doub Y N 43 A1AD3 N12 C11 doub Y N 44 A1AD3 C16 C11 sing Y N 45 A1AD3 C16 C17 sing Y N 46 A1AD3 C11 N10 sing Y N 47 A1AD3 C17 C08 doub Y N 48 A1AD3 N10 C09 doub Y N 49 A1AD3 C08 C09 sing Y N 50 A1AD3 C08 N07 sing N N 51 A1AD3 C06 N07 sing Y N 52 A1AD3 C06 N05 doub Y N 53 A1AD3 N07 C18 sing Y N 54 A1AD3 N05 C04 sing Y N 55 A1AD3 C18 C04 doub Y N 56 A1AD3 C18 N19 sing N N 57 A1AD3 C04 C02 sing N N 58 A1AD3 C02 N01 sing N N 59 A1AD3 C02 O03 doub N N 60 A1AD3 C06 H1 sing N N 61 A1AD3 C09 H2 sing N N 62 A1AD3 C13 H3 sing N N 63 A1AD3 C14 H4 sing N N 64 A1AD3 C15 H5 sing N N 65 A1AD3 C17 H6 sing N N 66 A1AD3 N01 H7 sing N N 67 A1AD3 N01 H8 sing N N 68 A1AD3 N19 H9 sing N N 69 A1AD3 N19 H10 sing N N 70 C OP3 P sing N N 71 C OP3 HOP3 sing N N 72 C P OP1 doub N N 73 C P OP2 sing N N 74 C P "O5'" sing N N 75 C OP2 HOP2 sing N N 76 C "O5'" "C5'" sing N N 77 C "C5'" "C4'" sing N N 78 C "C5'" "H5'" sing N N 79 C "C5'" "H5''" sing N N 80 C "C4'" "O4'" sing N N 81 C "C4'" "C3'" sing N N 82 C "C4'" "H4'" sing N N 83 C "O4'" "C1'" sing N N 84 C "C3'" "O3'" sing N N 85 C "C3'" "C2'" sing N N 86 C "C3'" "H3'" sing N N 87 C "O3'" "HO3'" sing N N 88 C "C2'" "O2'" sing N N 89 C "C2'" "C1'" sing N N 90 C "C2'" "H2'" sing N N 91 C "O2'" "HO2'" sing N N 92 C "C1'" N1 sing N N 93 C "C1'" "H1'" sing N N 94 C N1 C2 sing N N 95 C N1 C6 sing N N 96 C C2 O2 doub N N 97 C C2 N3 sing N N 98 C N3 C4 doub N N 99 C C4 N4 sing N N 100 C C4 C5 sing N N 101 C N4 H41 sing N N 102 C N4 H42 sing N N 103 C C5 C6 doub N N 104 C C5 H5 sing N N 105 C C6 H6 sing N N 106 G OP3 P sing N N 107 G OP3 HOP3 sing N N 108 G P OP1 doub N N 109 G P OP2 sing N N 110 G P "O5'" sing N N 111 G OP2 HOP2 sing N N 112 G "O5'" "C5'" sing N N 113 G "C5'" "C4'" sing N N 114 G "C5'" "H5'" sing N N 115 G "C5'" "H5''" sing N N 116 G "C4'" "O4'" sing N N 117 G "C4'" "C3'" sing N N 118 G "C4'" "H4'" sing N N 119 G "O4'" "C1'" sing N N 120 G "C3'" "O3'" sing N N 121 G "C3'" "C2'" sing N N 122 G "C3'" "H3'" sing N N 123 G "O3'" "HO3'" sing N N 124 G "C2'" "O2'" sing N N 125 G "C2'" "C1'" sing N N 126 G "C2'" "H2'" sing N N 127 G "O2'" "HO2'" sing N N 128 G "C1'" N9 sing N N 129 G "C1'" "H1'" sing N N 130 G N9 C8 sing Y N 131 G N9 C4 sing Y N 132 G C8 N7 doub Y N 133 G C8 H8 sing N N 134 G N7 C5 sing Y N 135 G C5 C6 sing N N 136 G C5 C4 doub Y N 137 G C6 O6 doub N N 138 G C6 N1 sing N N 139 G N1 C2 sing N N 140 G N1 H1 sing N N 141 G C2 N2 sing N N 142 G C2 N3 doub N N 143 G N2 H21 sing N N 144 G N2 H22 sing N N 145 G N3 C4 sing N N 146 HOH O H1 sing N N 147 HOH O H2 sing N N 148 U OP3 P sing N N 149 U OP3 HOP3 sing N N 150 U P OP1 doub N N 151 U P OP2 sing N N 152 U P "O5'" sing N N 153 U OP2 HOP2 sing N N 154 U "O5'" "C5'" sing N N 155 U "C5'" "C4'" sing N N 156 U "C5'" "H5'" sing N N 157 U "C5'" "H5''" sing N N 158 U "C4'" "O4'" sing N N 159 U "C4'" "C3'" sing N N 160 U "C4'" "H4'" sing N N 161 U "O4'" "C1'" sing N N 162 U "C3'" "O3'" sing N N 163 U "C3'" "C2'" sing N N 164 U "C3'" "H3'" sing N N 165 U "O3'" "HO3'" sing N N 166 U "C2'" "O2'" sing N N 167 U "C2'" "C1'" sing N N 168 U "C2'" "H2'" sing N N 169 U "O2'" "HO2'" sing N N 170 U "C1'" N1 sing N N 171 U "C1'" "H1'" sing N N 172 U N1 C2 sing N N 173 U N1 C6 sing N N 174 U C2 O2 doub N N 175 U C2 N3 sing N N 176 U N3 C4 sing N N 177 U N3 H3 sing N N 178 U C4 O4 doub N N 179 U C4 C5 sing N N 180 U C5 C6 doub N N 181 U C5 H5 sing N N 182 U C6 H6 sing N N 183 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8VVJ 'double helix' 8VVJ 'a-form double helix' 8VVJ 'hairpin loop' 8VVJ 'mismatched base pair' 8VVJ 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 12 1_555 A A 28 1_555 -2.259 6.904 -1.766 -33.441 1.018 150.469 1 A_G12:A28_A A 12 ? A 28 ? ? 11 1 A C 29 1_555 A G 24 1_555 0.086 -0.364 -0.178 4.576 -15.319 -0.260 2 A_C29:G24_A A 29 ? A 24 ? 19 1 1 A C 30 1_555 A G 23 1_555 0.300 -0.147 0.098 -3.821 -8.592 -1.246 3 A_C30:G23_A A 30 ? A 23 ? 19 1 1 A A 31 1_555 A U 22 1_555 0.311 -0.096 0.250 3.405 -1.435 -1.954 4 A_A31:U22_A A 31 ? A 22 ? 20 1 1 A C 32 1_555 A G 21 1_555 0.381 -0.230 -0.048 -3.526 -9.980 2.168 5 A_C32:G21_A A 32 ? A 21 ? 19 1 1 A C 33 1_555 A G 20 1_555 0.117 -0.056 0.396 3.692 -7.531 0.370 6 A_C33:G20_A A 33 ? A 20 ? 19 1 1 A G 35 1_555 A U 11 1_555 -2.228 -0.500 -0.290 -9.619 -13.117 0.668 7 A_G35:U11_A A 35 ? A 11 ? 28 1 1 A G 36 1_555 A C 10 1_555 -0.279 -0.189 0.308 -2.926 -7.733 1.522 8 A_G36:C10_A A 36 ? A 10 ? 19 1 1 A G 37 1_555 A A 9 1_555 6.942 -4.712 0.392 -1.248 -11.677 -5.576 9 A_G37:A9_A A 37 ? A 9 ? 11 10 1 A A 38 1_555 A G 8 1_555 -6.890 -4.969 -0.421 6.417 -8.439 -13.276 10 A_A38:G8_A A 38 ? A 8 ? 11 10 1 A G 39 1_555 A U 7 1_555 -2.560 -0.949 0.161 6.841 -14.179 -3.125 11 A_G39:U7_A A 39 ? A 7 ? 28 1 1 A C 40 1_555 A G 6 1_555 0.045 -0.231 -0.050 7.043 -14.016 0.585 12 A_C40:G6_A A 40 ? A 6 ? 19 1 1 A G 41 1_555 A C 5 1_555 0.244 0.100 0.333 4.695 -7.066 5.338 13 A_G41:C5_A A 41 ? A 5 ? 19 1 1 A A 42 1_555 A U 4 1_555 -0.020 -0.003 0.175 9.895 -12.649 0.333 14 A_A42:U4_A A 42 ? A 4 ? 20 1 1 A C 43 1_555 A G 3 1_555 0.373 0.173 -0.030 12.280 -15.260 3.731 15 A_C43:G3_A A 43 ? A 3 ? 19 1 1 A C 44 1_555 A G 2 1_555 0.495 -0.113 0.133 2.012 -15.755 3.266 16 A_C44:G2_A A 44 ? A 2 ? 19 1 1 A C 45 1_555 A G 1 1_555 0.145 -0.285 0.047 1.938 -16.312 -6.049 17 A_C45:G1_A A 45 ? A 1 ? 19 1 1 A U 46 1_555 A A 64 1_555 -0.566 -0.146 0.254 -11.786 -14.167 1.734 18 A_U46:A64_A A 46 ? A 64 ? 20 1 1 A U 47 1_555 A A 63 1_555 -0.128 0.035 0.419 -1.645 -12.491 1.185 19 A_U47:A63_A A 47 ? A 63 ? 20 1 1 A G 48 1_555 A C 62 1_555 -0.248 -0.005 0.168 3.647 -13.812 4.138 20 A_G48:C62_A A 48 ? A 62 ? 19 1 1 A C 49 1_555 A G 61 1_555 0.465 -0.233 -0.114 5.352 -17.206 -1.553 21 A_C49:G61_A A 49 ? A 61 ? 19 1 1 A C 50 1_555 A G 60 1_555 0.153 -0.182 -0.262 3.937 4.837 -1.306 22 A_C50:G60_A A 50 ? A 60 ? 19 1 1 A G 51 1_555 A G 59 1_555 -2.061 -2.284 1.140 -3.481 -45.010 126.257 23 A_G51:G59_A A 51 ? A 59 ? ? 2 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 29 1_555 A G 24 1_555 A C 30 1_555 A G 23 1_555 -0.588 -2.023 3.530 -1.867 6.362 33.000 -4.562 0.703 3.124 11.061 3.246 33.642 1 AA_C29C30:G23G24_AA A 29 ? A 24 ? A 30 ? A 23 ? 1 A C 30 1_555 A G 23 1_555 A A 31 1_555 A U 22 1_555 -0.314 -1.598 3.018 -1.312 9.235 27.546 -4.907 0.382 2.380 18.726 2.661 29.053 2 AA_C30A31:U22G23_AA A 30 ? A 23 ? A 31 ? A 22 ? 1 A A 31 1_555 A U 22 1_555 A C 32 1_555 A G 21 1_555 0.784 -1.234 3.676 3.147 17.025 31.549 -4.562 -0.800 2.740 28.764 -5.317 35.881 3 AA_A31C32:G21U22_AA A 31 ? A 22 ? A 32 ? A 21 ? 1 A C 32 1_555 A G 21 1_555 A C 33 1_555 A G 20 1_555 0.503 -1.846 2.957 -1.340 12.687 28.265 -5.384 -1.146 1.943 24.465 2.584 30.958 4 AA_C32C33:G20G21_AA A 32 ? A 21 ? A 33 ? A 20 ? 1 A C 33 1_555 A G 20 1_555 A G 35 1_555 A U 11 1_555 2.507 -1.437 6.618 10.004 18.468 70.560 -2.420 -1.443 6.391 15.646 -8.475 73.230 5 AA_C33G35:U11G20_AA A 33 ? A 20 ? A 35 ? A 11 ? 1 A G 35 1_555 A U 11 1_555 A G 36 1_555 A C 10 1_555 -0.979 -2.293 3.112 -7.026 3.002 30.259 -4.810 0.547 3.022 5.638 13.197 31.186 6 AA_G35G36:C10U11_AA A 35 ? A 11 ? A 36 ? A 10 ? 1 A G 36 1_555 A C 10 1_555 A G 37 1_555 A A 9 1_555 -0.946 -0.653 3.331 2.430 5.048 66.734 -0.791 0.954 3.248 4.581 -2.205 66.942 7 AA_G36G37:A9C10_AA A 36 ? A 10 ? A 37 ? A 9 ? 1 A G 37 1_555 A A 9 1_555 A A 38 1_555 A G 8 1_555 -0.280 -0.683 3.338 6.352 1.738 -32.083 0.902 0.637 3.362 -3.105 11.343 -32.735 8 AA_G37A38:G8A9_AA A 37 ? A 9 ? A 38 ? A 8 ? 1 A A 38 1_555 A G 8 1_555 A G 39 1_555 A U 7 1_555 1.209 -1.104 3.442 -6.467 -0.056 56.953 -1.148 -1.626 3.299 -0.058 6.757 57.288 9 AA_A38G39:U7G8_AA A 38 ? A 8 ? A 39 ? A 7 ? 1 A G 39 1_555 A U 7 1_555 A C 40 1_555 A G 6 1_555 -0.184 -1.480 3.278 -0.409 -0.077 44.033 -1.967 0.207 3.282 -0.102 0.545 44.035 10 AA_G39C40:G6U7_AA A 39 ? A 7 ? A 40 ? A 6 ? 1 A C 40 1_555 A G 6 1_555 A G 41 1_555 A C 5 1_555 -0.310 -1.907 3.172 -4.104 11.056 29.269 -5.315 -0.098 2.337 20.844 7.738 31.507 11 AA_C40G41:C5G6_AA A 40 ? A 6 ? A 41 ? A 5 ? 1 A G 41 1_555 A C 5 1_555 A A 42 1_555 A U 4 1_555 -0.571 -1.085 3.114 1.357 8.330 31.814 -3.210 1.219 2.724 14.871 -2.422 32.887 12 AA_G41A42:U4C5_AA A 41 ? A 5 ? A 42 ? A 4 ? 1 A A 42 1_555 A U 4 1_555 A C 43 1_555 A G 3 1_555 0.444 -1.217 3.210 1.252 10.002 32.109 -3.626 -0.577 2.733 17.550 -2.197 33.615 13 AA_A42C43:G3U4_AA A 42 ? A 4 ? A 43 ? A 3 ? 1 A C 43 1_555 A G 3 1_555 A C 44 1_555 A G 2 1_555 -0.126 -1.560 3.338 -0.661 13.385 33.745 -4.266 0.116 2.558 22.010 1.086 36.237 14 AA_C43C44:G2G3_AA A 43 ? A 3 ? A 44 ? A 2 ? 1 A C 44 1_555 A G 2 1_555 A C 45 1_555 A G 1 1_555 0.036 -1.969 3.195 2.774 6.253 31.545 -4.567 0.389 2.757 11.335 -5.029 32.260 15 AA_C44C45:G1G2_AA A 44 ? A 2 ? A 45 ? A 1 ? 1 A C 45 1_555 A G 1 1_555 A U 46 1_555 A A 64 1_555 1.333 -1.061 3.474 4.408 6.277 38.420 -2.381 -1.429 3.392 9.423 -6.618 39.149 16 AA_C45U46:A64G1_AA A 45 ? A 1 ? A 46 ? A 64 ? 1 A U 46 1_555 A A 64 1_555 A U 47 1_555 A A 63 1_555 0.276 -1.295 3.066 -0.894 4.813 31.933 -3.103 -0.639 2.837 8.684 1.613 32.297 17 AA_U46U47:A63A64_AA A 46 ? A 64 ? A 47 ? A 63 ? 1 A U 47 1_555 A A 63 1_555 A G 48 1_555 A C 62 1_555 0.389 -1.616 3.039 0.564 6.049 28.680 -4.344 -0.663 2.657 12.042 -1.122 29.303 18 AA_U47G48:C62A63_AA A 47 ? A 63 ? A 48 ? A 62 ? 1 A G 48 1_555 A C 62 1_555 A C 49 1_555 A G 61 1_555 -0.738 -1.573 3.306 -2.234 -2.793 36.046 -2.124 0.862 3.452 -4.500 3.598 36.217 19 AA_G48C49:G61C62_AA A 48 ? A 62 ? A 49 ? A 61 ? 1 A C 49 1_555 A G 61 1_555 A C 50 1_555 A G 60 1_555 -0.233 -2.063 3.415 1.788 11.821 29.420 -5.790 0.730 2.409 22.158 -3.351 31.706 20 AA_C49C50:G60G61_AA A 49 ? A 61 ? A 50 ? A 60 ? 1 A C 50 1_555 A G 60 1_555 A G 51 1_555 A G 59 1_555 -2.018 -2.649 -0.122 -162.453 60.653 138.986 -1.328 1.001 0.222 30.400 81.422 177.691 21 AA_C50G51:G59G60_AA A 50 ? A 60 ? A 51 ? A 59 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4XWF _pdbx_initial_refinement_model.details 'Ions, ligands removed' # _atom_sites.entry_id 8VVJ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.008457 _atom_sites.fract_transf_matrix[1][2] 0.004883 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009765 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004949 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C K MG N O P # loop_ # loop_ #