HEADER LIGASE 31-JAN-24 8VW2 TITLE CRYSTAL STRUCTURE OF APO UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE TITLE 2 LIGASE (MURD) FROM E. COLI (ATP BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: D-GLUTAMIC ACID-ADDING ENZYME,UDP-N-ACETYLMURAMOYL-L-ALANYL- COMPND 5 D-GLUTAMATE SYNTHETASE; COMPND 6 EC: 6.3.2.9; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 GENE: MURD, B0088, JW0086; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: ESCOA.17938.A.AE1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, MURD, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 1 14-FEB-24 8VW2 0 JRNL AUTH S.SEIBOLD,S.LOVELL,L.LIU,K.P.BATTAILE JRNL TITL CRYSTAL STRUCTURE OF APO JRNL TITL 2 UDP-N-ACETYLMURAMOYLALANINE--D-GLUTAMATE LIGASE (MURD) FROM JRNL TITL 3 E. COLI (ATP BOUND) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21_5219: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1528 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8500 - 4.3400 0.99 2792 153 0.1604 0.1963 REMARK 3 2 4.3400 - 3.4400 0.99 2696 139 0.1458 0.1896 REMARK 3 3 3.4400 - 3.0100 1.00 2668 147 0.1675 0.2338 REMARK 3 4 3.0100 - 2.7300 1.00 2659 130 0.1774 0.2635 REMARK 3 5 2.7300 - 2.5400 1.00 2634 133 0.1876 0.2312 REMARK 3 6 2.5400 - 2.3900 1.00 2628 150 0.1776 0.2583 REMARK 3 7 2.3900 - 2.2700 1.00 2607 143 0.1641 0.2121 REMARK 3 8 2.2700 - 2.1700 1.00 2625 123 0.1714 0.2451 REMARK 3 9 2.1700 - 2.0800 1.00 2623 123 0.1920 0.2484 REMARK 3 10 2.0800 - 2.0100 1.00 2613 144 0.2223 0.3001 REMARK 3 11 2.0100 - 1.9500 1.00 2581 143 0.2517 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3375 REMARK 3 ANGLE : 0.934 4596 REMARK 3 CHIRALITY : 0.056 537 REMARK 3 PLANARITY : 0.008 599 REMARK 3 DIHEDRAL : 15.281 1242 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8663 -15.0201 -3.3779 REMARK 3 T TENSOR REMARK 3 T11: 0.3282 T22: 0.2603 REMARK 3 T33: 0.2809 T12: 0.0081 REMARK 3 T13: -0.0081 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.0030 L22: 0.7574 REMARK 3 L33: 1.7374 L12: 0.0888 REMARK 3 L13: 0.2637 L23: 0.0404 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: -0.1163 S13: -0.0678 REMARK 3 S21: 0.1641 S22: 0.0286 S23: -0.0103 REMARK 3 S31: 0.0120 S32: -0.0351 S33: -0.0165 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0250 -23.5486 -31.2213 REMARK 3 T TENSOR REMARK 3 T11: 0.2095 T22: 0.2013 REMARK 3 T33: 0.2405 T12: -0.0002 REMARK 3 T13: -0.0320 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 1.3269 L22: 1.3626 REMARK 3 L33: 2.1297 L12: -0.1153 REMARK 3 L13: -0.5074 L23: 0.5780 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: 0.0666 S13: -0.0276 REMARK 3 S21: 0.0338 S22: -0.0526 S23: -0.0209 REMARK 3 S31: 0.0410 S32: 0.0408 S33: 0.0241 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 440 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3152 -18.3261 -29.6643 REMARK 3 T TENSOR REMARK 3 T11: 0.2661 T22: 0.4285 REMARK 3 T33: 0.2623 T12: 0.0209 REMARK 3 T13: 0.0022 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 1.6129 L22: 0.9464 REMARK 3 L33: 1.2689 L12: 0.3784 REMARK 3 L13: 0.5086 L23: 0.0641 REMARK 3 S TENSOR REMARK 3 S11: 0.0216 S12: 0.0715 S13: -0.1609 REMARK 3 S21: 0.0720 S22: 0.0601 S23: -0.0170 REMARK 3 S31: 0.1176 S32: 0.2408 S33: -0.0774 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 44.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.15100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS A8: 12.5%(V/V) MPD, REMARK 280 12.5%(V/V) PEG 1000, 12.5%(W/V) PEG 3350, 100 MM HEPES/MOPS, PH REMARK 280 7.5, 30 MM MGCL2 AND 30 MM CACL2, 2% (V/V) DMSO. REMARK 280 ESCOA.17938.A.AE1.PW39153 AT 17.4 MG/ML. 4 HOUR SOAK IN 5 MM REMARK 280 ATP. PLATE 13768 WELL E4 DROP 1 OR 2. PUCK: PSL-1106, CRYO: REMARK 280 DIRECT, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.22800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.26700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.97200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.26700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.22800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.97200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 HIS A 441 REMARK 465 HIS A 442 REMARK 465 HIS A 443 REMARK 465 HIS A 444 REMARK 465 HIS A 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 182 CG CD OE1 OE2 REMARK 470 ASP A 183 CG OD1 OD2 REMARK 470 HIS A 184 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 185 CG SD CE REMARK 470 ASP A 186 CG OD1 OD2 REMARK 470 GLN A 244 CG CD OE1 NE2 REMARK 470 HIS A 335 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 363 CG OD1 OD2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 HIS A 440 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 57 176.62 179.52 REMARK 500 GLU A 182 96.48 -55.61 REMARK 500 PHE A 304 55.14 38.38 REMARK 500 ARG A 381 86.62 -155.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 505 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 117 OG REMARK 620 2 GLU A 158 OE2 84.2 REMARK 620 3 ATP A 504 O1G 177.1 93.7 REMARK 620 4 ATP A 504 O2B 84.3 94.6 93.9 REMARK 620 5 HOH A 683 O 86.1 169.2 96.2 89.0 REMARK 620 6 HOH A 713 O 90.6 82.9 91.1 174.5 92.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 416 OG REMARK 620 2 HOH A 730 O 91.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 507 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 504 O3G REMARK 620 2 HOH A 601 O 100.0 REMARK 620 3 HOH A 688 O 90.1 75.7 REMARK 620 4 HOH A 742 O 174.2 81.5 95.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 506 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 607 O REMARK 620 2 HOH A 633 O 74.2 REMARK 620 3 HOH A 736 O 102.3 82.3 REMARK 620 4 HOH A 743 O 73.8 75.3 157.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 508 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 608 O REMARK 620 2 HOH A 637 O 87.6 REMARK 620 3 HOH A 690 O 66.5 87.8 REMARK 620 4 HOH A 734 O 97.1 157.5 74.1 REMARK 620 5 HOH A 739 O 152.4 72.8 93.0 94.4 REMARK 620 N 1 2 3 4 DBREF 8VW2 A 1 438 UNP P14900 MURD_ECOLI 1 438 SEQADV 8VW2 GLY A 439 UNP P14900 EXPRESSION TAG SEQADV 8VW2 HIS A 440 UNP P14900 EXPRESSION TAG SEQADV 8VW2 HIS A 441 UNP P14900 EXPRESSION TAG SEQADV 8VW2 HIS A 442 UNP P14900 EXPRESSION TAG SEQADV 8VW2 HIS A 443 UNP P14900 EXPRESSION TAG SEQADV 8VW2 HIS A 444 UNP P14900 EXPRESSION TAG SEQADV 8VW2 HIS A 445 UNP P14900 EXPRESSION TAG SEQRES 1 A 445 MET ALA ASP TYR GLN GLY LYS ASN VAL VAL ILE ILE GLY SEQRES 2 A 445 LEU GLY LEU THR GLY LEU SER CYS VAL ASP PHE PHE LEU SEQRES 3 A 445 ALA ARG GLY VAL THR PRO ARG VAL MET ASP THR ARG MET SEQRES 4 A 445 THR PRO PRO GLY LEU ASP LYS LEU PRO GLU ALA VAL GLU SEQRES 5 A 445 ARG HIS THR GLY SER LEU ASN ASP GLU TRP LEU MET ALA SEQRES 6 A 445 ALA ASP LEU ILE VAL ALA SER PRO GLY ILE ALA LEU ALA SEQRES 7 A 445 HIS PRO SER LEU SER ALA ALA ALA ASP ALA GLY ILE GLU SEQRES 8 A 445 ILE VAL GLY ASP ILE GLU LEU PHE CYS ARG GLU ALA GLN SEQRES 9 A 445 ALA PRO ILE VAL ALA ILE THR GLY SER ASN GLY LYS SER SEQRES 10 A 445 THR VAL THR THR LEU VAL GLY GLU MET ALA LYS ALA ALA SEQRES 11 A 445 GLY VAL ASN VAL GLY VAL GLY GLY ASN ILE GLY LEU PRO SEQRES 12 A 445 ALA LEU MET LEU LEU ASP ASP GLU CYS GLU LEU TYR VAL SEQRES 13 A 445 LEU GLU LEU SER SER PHE GLN LEU GLU THR THR SER SER SEQRES 14 A 445 LEU GLN ALA VAL ALA ALA THR ILE LEU ASN VAL THR GLU SEQRES 15 A 445 ASP HIS MET ASP ARG TYR PRO PHE GLY LEU GLN GLN TYR SEQRES 16 A 445 ARG ALA ALA KCX LEU ARG ILE TYR GLU ASN ALA LYS VAL SEQRES 17 A 445 CYS VAL VAL ASN ALA ASP ASP ALA LEU THR MET PRO ILE SEQRES 18 A 445 ARG GLY ALA ASP GLU ARG CYS VAL SER PHE GLY VAL ASN SEQRES 19 A 445 MET GLY ASP TYR HIS LEU ASN HIS GLN GLN GLY GLU THR SEQRES 20 A 445 TRP LEU ARG VAL LYS GLY GLU LYS VAL LEU ASN VAL LYS SEQRES 21 A 445 GLU MET LYS LEU SER GLY GLN HIS ASN TYR THR ASN ALA SEQRES 22 A 445 LEU ALA ALA LEU ALA LEU ALA ASP ALA ALA GLY LEU PRO SEQRES 23 A 445 ARG ALA SER SER LEU LYS ALA LEU THR THR PHE THR GLY SEQRES 24 A 445 LEU PRO HIS ARG PHE GLU VAL VAL LEU GLU HIS ASN GLY SEQRES 25 A 445 VAL ARG TRP ILE ASN ASP SER LYS ALA THR ASN VAL GLY SEQRES 26 A 445 SER THR GLU ALA ALA LEU ASN GLY LEU HIS VAL ASP GLY SEQRES 27 A 445 THR LEU HIS LEU LEU LEU GLY GLY ASP GLY LYS SER ALA SEQRES 28 A 445 ASP PHE SER PRO LEU ALA ARG TYR LEU ASN GLY ASP ASN SEQRES 29 A 445 VAL ARG LEU TYR CYS PHE GLY ARG ASP GLY ALA GLN LEU SEQRES 30 A 445 ALA ALA LEU ARG PRO GLU VAL ALA GLU GLN THR GLU THR SEQRES 31 A 445 MET GLU GLN ALA MET ARG LEU LEU ALA PRO ARG VAL GLN SEQRES 32 A 445 PRO GLY ASP MET VAL LEU LEU SER PRO ALA CYS ALA SER SEQRES 33 A 445 LEU ASP GLN PHE LYS ASN PHE GLU GLN ARG GLY ASN GLU SEQRES 34 A 445 PHE ALA ARG LEU ALA LYS GLU LEU GLY GLY HIS HIS HIS SEQRES 35 A 445 HIS HIS HIS MODRES 8VW2 KCX A 199 LYS MODIFIED RESIDUE HET KCX A 199 12 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET ATP A 504 31 HET MG A 505 1 HET MG A 506 1 HET MG A 507 1 HET MG A 508 1 HET MPD A 509 8 HET DMS A 510 4 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM CA CALCIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM DMS DIMETHYL SULFOXIDE FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 CA 3(CA 2+) FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 MG 4(MG 2+) FORMUL 10 MPD C6 H14 O2 FORMUL 11 DMS C2 H6 O S FORMUL 12 HOH *143(H2 O) HELIX 1 AA1 GLY A 15 ARG A 28 1 14 HELIX 2 AA2 PRO A 41 LEU A 47 5 7 HELIX 3 AA3 ASN A 59 ALA A 66 1 8 HELIX 4 AA4 HIS A 79 ALA A 88 1 10 HELIX 5 AA5 GLY A 94 ALA A 103 1 10 HELIX 6 AA6 GLY A 115 ALA A 130 1 16 HELIX 7 AA7 PRO A 143 LEU A 148 5 6 HELIX 8 AA8 SER A 160 THR A 166 1 7 HELIX 9 AA9 HIS A 184 TYR A 188 5 5 HELIX 10 AB1 GLY A 191 ARG A 201 1 11 HELIX 11 AB2 ILE A 202 GLU A 204 5 3 HELIX 12 AB3 ASP A 215 MET A 219 5 5 HELIX 13 AB4 LYS A 260 MET A 262 5 3 HELIX 14 AB5 GLY A 266 GLY A 284 1 19 HELIX 15 AB6 PRO A 286 PHE A 297 1 12 HELIX 16 AB7 ASN A 323 ASN A 332 1 10 HELIX 17 AB8 PHE A 353 LEU A 360 5 8 HELIX 18 AB9 ASP A 373 ALA A 379 1 7 HELIX 19 AC1 LEU A 380 GLU A 383 5 4 HELIX 20 AC2 THR A 390 ALA A 399 1 10 HELIX 21 AC3 PRO A 400 VAL A 402 5 3 HELIX 22 AC4 ASN A 422 GLY A 439 1 18 SHEET 1 AA1 5 ARG A 53 THR A 55 0 SHEET 2 AA1 5 ARG A 33 ASP A 36 1 N VAL A 34 O HIS A 54 SHEET 3 AA1 5 VAL A 9 ILE A 12 1 N ILE A 11 O ARG A 33 SHEET 4 AA1 5 LEU A 68 ALA A 71 1 O VAL A 70 N ILE A 12 SHEET 5 AA1 5 GLU A 91 VAL A 93 1 O VAL A 93 N ALA A 71 SHEET 1 AA2 6 VAL A 134 GLY A 137 0 SHEET 2 AA2 6 LEU A 154 GLU A 158 1 O VAL A 156 N GLY A 135 SHEET 3 AA2 6 ILE A 107 THR A 111 1 N VAL A 108 O LEU A 157 SHEET 4 AA2 6 ALA A 174 ILE A 177 1 O THR A 176 N THR A 111 SHEET 5 AA2 6 CYS A 209 ASN A 212 1 O VAL A 210 N ALA A 175 SHEET 6 AA2 6 CYS A 228 PHE A 231 1 O VAL A 229 N VAL A 211 SHEET 1 AA3 3 TYR A 238 GLN A 243 0 SHEET 2 AA3 3 GLU A 246 VAL A 251 -1 O ARG A 250 N HIS A 239 SHEET 3 AA3 3 GLU A 254 ASN A 258 -1 O GLU A 254 N VAL A 251 SHEET 1 AA4 6 GLU A 305 HIS A 310 0 SHEET 2 AA4 6 VAL A 313 ASN A 317 -1 O ASN A 317 N GLU A 305 SHEET 3 AA4 6 MET A 407 LEU A 410 1 O VAL A 408 N ILE A 316 SHEET 4 AA4 6 LEU A 340 GLY A 345 1 N HIS A 341 O MET A 407 SHEET 5 AA4 6 VAL A 365 PHE A 370 1 O ARG A 366 N LEU A 342 SHEET 6 AA4 6 ALA A 385 GLN A 387 1 O GLU A 386 N CYS A 369 LINK C ALA A 198 N KCX A 199 1555 1555 1.33 LINK C KCX A 199 N LEU A 200 1555 1555 1.33 LINK OG SER A 117 MG MG A 505 1555 1555 2.31 LINK OE2 GLU A 158 MG MG A 505 1555 1555 2.20 LINK OG SER A 416 CA CA A 503 1555 1555 3.15 LINK CA CA A 503 O HOH A 730 1555 1555 2.72 LINK O1G ATP A 504 MG MG A 505 1555 1555 1.99 LINK O2B ATP A 504 MG MG A 505 1555 1555 2.02 LINK O3G ATP A 504 MG MG A 507 1555 1555 2.23 LINK MG MG A 505 O HOH A 683 1555 1555 2.16 LINK MG MG A 505 O HOH A 713 1555 1555 2.25 LINK MG MG A 506 O HOH A 607 1555 1555 2.55 LINK MG MG A 506 O HOH A 633 1555 3544 2.24 LINK MG MG A 506 O HOH A 736 1555 1555 2.17 LINK MG MG A 506 O HOH A 743 1555 1555 2.47 LINK MG MG A 507 O HOH A 601 1555 1555 2.47 LINK MG MG A 507 O HOH A 688 1555 1555 2.17 LINK MG MG A 507 O HOH A 742 1555 1555 2.59 LINK MG MG A 508 O HOH A 608 1555 4445 2.25 LINK MG MG A 508 O HOH A 637 1555 4445 2.26 LINK MG MG A 508 O HOH A 690 1555 4445 2.11 LINK MG MG A 508 O HOH A 734 1555 1555 2.18 LINK MG MG A 508 O HOH A 739 1555 4445 2.18 CRYST1 58.456 69.944 100.534 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017107 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014297 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009947 0.00000