data_8VX4 # _entry.id 8VX4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VX4 pdb_00008vx4 10.2210/pdb8vx4/pdb WWPDB D_1000281331 ? ? EMDB EMD-43607 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VX4 _pdbx_database_status.recvd_initial_deposition_date 2024-02-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Human OGG1 binding at 8-oxoG of a 35 bp DNA duplex' _pdbx_database_related.db_id EMD-43607 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email Huilin.Li@vai.org _pdbx_contact_author.name_first Huilin _pdbx_contact_author.name_last Li _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8085-8928 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'You, Q.' 1 ? 'Li, H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Commun Biol' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2399-3642 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 7 _citation.language ? _citation.page_first 1202 _citation.page_last 1202 _citation.title 'Human 8-oxoguanine glycosylase OGG1 binds nucleosome at the dsDNA ends and the super-helical locations.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s42003-024-06919-7 _citation.pdbx_database_id_PubMed 39341999 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'You, Q.' 1 0000-0002-5160-6198 primary 'Feng, X.' 2 0000-0002-4441-3152 primary 'Cai, Y.' 3 ? primary 'Baylin, S.B.' 4 0000-0003-3697-3798 primary 'Li, H.' 5 0000-0001-8085-8928 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'DNA (35-MER)' 10695.851 1 ? ? ? ? 2 polymer syn 'DNA (35-MER)' 10861.943 1 ? ? ? ? 3 polymer man 'N-glycosylase/DNA lyase' 43720.020 1 3.2.2.-,4.2.99.18 K249Q ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes ;(DA)(DT)(DG)(DC)(DC)(DT)(DC)(DG)(DC)(DA)(DG)(DA)(DA)(DT)(DC)(DC)(DC)(8OG)(DC) (DT)(DG)(DC)(DC)(DG)(DA)(DG)(DG)(DC)(DC)(DG)(DC)(DT)(DC)(DA)(DA) ; ATGCCTCGCAGAATCCCGCTGCCGAGGCCGCTCAA C ? 2 polydeoxyribonucleotide no no ;(DT)(DT)(DG)(DA)(DG)(DC)(DG)(DG)(DC)(DC)(DT)(DC)(DG)(DG)(DC)(DA)(DG)(DC)(DG)(DG) (DG)(DA)(DT)(DT)(DC)(DT)(DG)(DC)(DG)(DA)(DG)(DG)(DC)(DA)(DT) ; TTGAGCGGCCTCGGCAGCGGGATTCTGCGAGGCAT B ? 3 'polypeptide(L)' no no ;MGHHHHHHDYKDHDGDYKDHDIDYKDDDDKENLYFQGGGGGSDPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLV LPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDS HFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRK LGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRD YSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSRHAQEPPAKRRKGSKGPEG ; ;MGHHHHHHDYKDHDGDYKDHDIDYKDDDDKENLYFQGGGGGSDPARALLPRRMGHRTLASTPALWASIPCPRSELRLDLV LPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDS HFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRK LGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRD YSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQSRHAQEPPAKRRKGSKGPEG ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DG n 1 4 DC n 1 5 DC n 1 6 DT n 1 7 DC n 1 8 DG n 1 9 DC n 1 10 DA n 1 11 DG n 1 12 DA n 1 13 DA n 1 14 DT n 1 15 DC n 1 16 DC n 1 17 DC n 1 18 8OG n 1 19 DC n 1 20 DT n 1 21 DG n 1 22 DC n 1 23 DC n 1 24 DG n 1 25 DA n 1 26 DG n 1 27 DG n 1 28 DC n 1 29 DC n 1 30 DG n 1 31 DC n 1 32 DT n 1 33 DC n 1 34 DA n 1 35 DA n 2 1 DT n 2 2 DT n 2 3 DG n 2 4 DA n 2 5 DG n 2 6 DC n 2 7 DG n 2 8 DG n 2 9 DC n 2 10 DC n 2 11 DT n 2 12 DC n 2 13 DG n 2 14 DG n 2 15 DC n 2 16 DA n 2 17 DG n 2 18 DC n 2 19 DG n 2 20 DG n 2 21 DG n 2 22 DA n 2 23 DT n 2 24 DT n 2 25 DC n 2 26 DT n 2 27 DG n 2 28 DC n 2 29 DG n 2 30 DA n 2 31 DG n 2 32 DG n 2 33 DC n 2 34 DA n 2 35 DT n 3 1 MET n 3 2 GLY n 3 3 HIS n 3 4 HIS n 3 5 HIS n 3 6 HIS n 3 7 HIS n 3 8 HIS n 3 9 ASP n 3 10 TYR n 3 11 LYS n 3 12 ASP n 3 13 HIS n 3 14 ASP n 3 15 GLY n 3 16 ASP n 3 17 TYR n 3 18 LYS n 3 19 ASP n 3 20 HIS n 3 21 ASP n 3 22 ILE n 3 23 ASP n 3 24 TYR n 3 25 LYS n 3 26 ASP n 3 27 ASP n 3 28 ASP n 3 29 ASP n 3 30 LYS n 3 31 GLU n 3 32 ASN n 3 33 LEU n 3 34 TYR n 3 35 PHE n 3 36 GLN n 3 37 GLY n 3 38 GLY n 3 39 GLY n 3 40 GLY n 3 41 GLY n 3 42 SER n 3 43 ASP n 3 44 PRO n 3 45 ALA n 3 46 ARG n 3 47 ALA n 3 48 LEU n 3 49 LEU n 3 50 PRO n 3 51 ARG n 3 52 ARG n 3 53 MET n 3 54 GLY n 3 55 HIS n 3 56 ARG n 3 57 THR n 3 58 LEU n 3 59 ALA n 3 60 SER n 3 61 THR n 3 62 PRO n 3 63 ALA n 3 64 LEU n 3 65 TRP n 3 66 ALA n 3 67 SER n 3 68 ILE n 3 69 PRO n 3 70 CYS n 3 71 PRO n 3 72 ARG n 3 73 SER n 3 74 GLU n 3 75 LEU n 3 76 ARG n 3 77 LEU n 3 78 ASP n 3 79 LEU n 3 80 VAL n 3 81 LEU n 3 82 PRO n 3 83 SER n 3 84 GLY n 3 85 GLN n 3 86 SER n 3 87 PHE n 3 88 ARG n 3 89 TRP n 3 90 ARG n 3 91 GLU n 3 92 GLN n 3 93 SER n 3 94 PRO n 3 95 ALA n 3 96 HIS n 3 97 TRP n 3 98 SER n 3 99 GLY n 3 100 VAL n 3 101 LEU n 3 102 ALA n 3 103 ASP n 3 104 GLN n 3 105 VAL n 3 106 TRP n 3 107 THR n 3 108 LEU n 3 109 THR n 3 110 GLN n 3 111 THR n 3 112 GLU n 3 113 GLU n 3 114 GLN n 3 115 LEU n 3 116 HIS n 3 117 CYS n 3 118 THR n 3 119 VAL n 3 120 TYR n 3 121 ARG n 3 122 GLY n 3 123 ASP n 3 124 LYS n 3 125 SER n 3 126 GLN n 3 127 ALA n 3 128 SER n 3 129 ARG n 3 130 PRO n 3 131 THR n 3 132 PRO n 3 133 ASP n 3 134 GLU n 3 135 LEU n 3 136 GLU n 3 137 ALA n 3 138 VAL n 3 139 ARG n 3 140 LYS n 3 141 TYR n 3 142 PHE n 3 143 GLN n 3 144 LEU n 3 145 ASP n 3 146 VAL n 3 147 THR n 3 148 LEU n 3 149 ALA n 3 150 GLN n 3 151 LEU n 3 152 TYR n 3 153 HIS n 3 154 HIS n 3 155 TRP n 3 156 GLY n 3 157 SER n 3 158 VAL n 3 159 ASP n 3 160 SER n 3 161 HIS n 3 162 PHE n 3 163 GLN n 3 164 GLU n 3 165 VAL n 3 166 ALA n 3 167 GLN n 3 168 LYS n 3 169 PHE n 3 170 GLN n 3 171 GLY n 3 172 VAL n 3 173 ARG n 3 174 LEU n 3 175 LEU n 3 176 ARG n 3 177 GLN n 3 178 ASP n 3 179 PRO n 3 180 ILE n 3 181 GLU n 3 182 CYS n 3 183 LEU n 3 184 PHE n 3 185 SER n 3 186 PHE n 3 187 ILE n 3 188 CYS n 3 189 SER n 3 190 SER n 3 191 ASN n 3 192 ASN n 3 193 ASN n 3 194 ILE n 3 195 ALA n 3 196 ARG n 3 197 ILE n 3 198 THR n 3 199 GLY n 3 200 MET n 3 201 VAL n 3 202 GLU n 3 203 ARG n 3 204 LEU n 3 205 CYS n 3 206 GLN n 3 207 ALA n 3 208 PHE n 3 209 GLY n 3 210 PRO n 3 211 ARG n 3 212 LEU n 3 213 ILE n 3 214 GLN n 3 215 LEU n 3 216 ASP n 3 217 ASP n 3 218 VAL n 3 219 THR n 3 220 TYR n 3 221 HIS n 3 222 GLY n 3 223 PHE n 3 224 PRO n 3 225 SER n 3 226 LEU n 3 227 GLN n 3 228 ALA n 3 229 LEU n 3 230 ALA n 3 231 GLY n 3 232 PRO n 3 233 GLU n 3 234 VAL n 3 235 GLU n 3 236 ALA n 3 237 HIS n 3 238 LEU n 3 239 ARG n 3 240 LYS n 3 241 LEU n 3 242 GLY n 3 243 LEU n 3 244 GLY n 3 245 TYR n 3 246 ARG n 3 247 ALA n 3 248 ARG n 3 249 TYR n 3 250 VAL n 3 251 SER n 3 252 ALA n 3 253 SER n 3 254 ALA n 3 255 ARG n 3 256 ALA n 3 257 ILE n 3 258 LEU n 3 259 GLU n 3 260 GLU n 3 261 GLN n 3 262 GLY n 3 263 GLY n 3 264 LEU n 3 265 ALA n 3 266 TRP n 3 267 LEU n 3 268 GLN n 3 269 GLN n 3 270 LEU n 3 271 ARG n 3 272 GLU n 3 273 SER n 3 274 SER n 3 275 TYR n 3 276 GLU n 3 277 GLU n 3 278 ALA n 3 279 HIS n 3 280 LYS n 3 281 ALA n 3 282 LEU n 3 283 CYS n 3 284 ILE n 3 285 LEU n 3 286 PRO n 3 287 GLY n 3 288 VAL n 3 289 GLY n 3 290 THR n 3 291 GLN n 3 292 VAL n 3 293 ALA n 3 294 ASP n 3 295 CYS n 3 296 ILE n 3 297 CYS n 3 298 LEU n 3 299 MET n 3 300 ALA n 3 301 LEU n 3 302 ASP n 3 303 LYS n 3 304 PRO n 3 305 GLN n 3 306 ALA n 3 307 VAL n 3 308 PRO n 3 309 VAL n 3 310 ASP n 3 311 VAL n 3 312 HIS n 3 313 MET n 3 314 TRP n 3 315 HIS n 3 316 ILE n 3 317 ALA n 3 318 GLN n 3 319 ARG n 3 320 ASP n 3 321 TYR n 3 322 SER n 3 323 TRP n 3 324 HIS n 3 325 PRO n 3 326 THR n 3 327 THR n 3 328 SER n 3 329 GLN n 3 330 ALA n 3 331 LYS n 3 332 GLY n 3 333 PRO n 3 334 SER n 3 335 PRO n 3 336 GLN n 3 337 THR n 3 338 ASN n 3 339 LYS n 3 340 GLU n 3 341 LEU n 3 342 GLY n 3 343 ASN n 3 344 PHE n 3 345 PHE n 3 346 ARG n 3 347 SER n 3 348 LEU n 3 349 TRP n 3 350 GLY n 3 351 PRO n 3 352 TYR n 3 353 ALA n 3 354 GLY n 3 355 TRP n 3 356 ALA n 3 357 GLN n 3 358 ALA n 3 359 VAL n 3 360 LEU n 3 361 PHE n 3 362 SER n 3 363 ALA n 3 364 ASP n 3 365 LEU n 3 366 ARG n 3 367 GLN n 3 368 SER n 3 369 ARG n 3 370 HIS n 3 371 ALA n 3 372 GLN n 3 373 GLU n 3 374 PRO n 3 375 PRO n 3 376 ALA n 3 377 LYS n 3 378 ARG n 3 379 ARG n 3 380 LYS n 3 381 GLY n 3 382 SER n 3 383 LYS n 3 384 GLY n 3 385 PRO n 3 386 GLU n 3 387 GLY n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 387 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'OGG1, MMH, MUTM, OGH1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 35 'synthetic construct' ? 32630 ? 2 1 sample 1 35 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 8OG 'DNA linking' n "8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" "8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE" 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 ? ? ? C . n A 1 2 DT 2 2 ? ? ? C . n A 1 3 DG 3 3 3 DG DG C . n A 1 4 DC 4 4 4 DC DC C . n A 1 5 DC 5 5 5 DC DC C . n A 1 6 DT 6 6 6 DT DT C . n A 1 7 DC 7 7 7 DC DC C . n A 1 8 DG 8 8 8 DG DG C . n A 1 9 DC 9 9 9 DC DC C . n A 1 10 DA 10 10 10 DA DA C . n A 1 11 DG 11 11 11 DG DG C . n A 1 12 DA 12 12 12 DA DA C . n A 1 13 DA 13 13 13 DA DA C . n A 1 14 DT 14 14 14 DT DT C . n A 1 15 DC 15 15 15 DC DC C . n A 1 16 DC 16 16 16 DC DC C . n A 1 17 DC 17 17 17 DC DC C . n A 1 18 8OG 18 18 18 8OG 8OG C . n A 1 19 DC 19 19 19 DC DC C . n A 1 20 DT 20 20 20 DT DT C . n A 1 21 DG 21 21 21 DG DG C . n A 1 22 DC 22 22 22 DC DC C . n A 1 23 DC 23 23 23 DC DC C . n A 1 24 DG 24 24 24 DG DG C . n A 1 25 DA 25 25 25 DA DA C . n A 1 26 DG 26 26 26 DG DG C . n A 1 27 DG 27 27 27 DG DG C . n A 1 28 DC 28 28 28 DC DC C . n A 1 29 DC 29 29 29 DC DC C . n A 1 30 DG 30 30 30 DG DG C . n A 1 31 DC 31 31 31 DC DC C . n A 1 32 DT 32 32 32 DT DT C . n A 1 33 DC 33 33 ? ? ? C . n A 1 34 DA 34 34 ? ? ? C . n A 1 35 DA 35 35 ? ? ? C . n B 2 1 DT 1 1 ? ? ? B . n B 2 2 DT 2 2 ? ? ? B . n B 2 3 DG 3 3 ? ? ? B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DC 6 6 6 DC DC B . n B 2 7 DG 7 7 7 DG DG B . n B 2 8 DG 8 8 8 DG DG B . n B 2 9 DC 9 9 9 DC DC B . n B 2 10 DC 10 10 10 DC DC B . n B 2 11 DT 11 11 11 DT DT B . n B 2 12 DC 12 12 12 DC DC B . n B 2 13 DG 13 13 13 DG DG B . n B 2 14 DG 14 14 14 DG DG B . n B 2 15 DC 15 15 15 DC DC B . n B 2 16 DA 16 16 16 DA DA B . n B 2 17 DG 17 17 17 DG DG B . n B 2 18 DC 18 18 18 DC DC B . n B 2 19 DG 19 19 19 DG DG B . n B 2 20 DG 20 20 20 DG DG B . n B 2 21 DG 21 21 21 DG DG B . n B 2 22 DA 22 22 22 DA DA B . n B 2 23 DT 23 23 23 DT DT B . n B 2 24 DT 24 24 24 DT DT B . n B 2 25 DC 25 25 25 DC DC B . n B 2 26 DT 26 26 26 DT DT B . n B 2 27 DG 27 27 27 DG DG B . n B 2 28 DC 28 28 28 DC DC B . n B 2 29 DG 29 29 29 DG DG B . n B 2 30 DA 30 30 30 DA DA B . n B 2 31 DG 31 31 31 DG DG B . n B 2 32 DG 32 32 32 DG DG B . n B 2 33 DC 33 33 33 DC DC B . n B 2 34 DA 34 34 ? ? ? B . n B 2 35 DT 35 35 ? ? ? B . n C 3 1 MET 1 -41 ? ? ? A . n C 3 2 GLY 2 -40 ? ? ? A . n C 3 3 HIS 3 -39 ? ? ? A . n C 3 4 HIS 4 -38 ? ? ? A . n C 3 5 HIS 5 -37 ? ? ? A . n C 3 6 HIS 6 -36 ? ? ? A . n C 3 7 HIS 7 -35 ? ? ? A . n C 3 8 HIS 8 -34 ? ? ? A . n C 3 9 ASP 9 -33 ? ? ? A . n C 3 10 TYR 10 -32 ? ? ? A . n C 3 11 LYS 11 -31 ? ? ? A . n C 3 12 ASP 12 -30 ? ? ? A . n C 3 13 HIS 13 -29 ? ? ? A . n C 3 14 ASP 14 -28 ? ? ? A . n C 3 15 GLY 15 -27 ? ? ? A . n C 3 16 ASP 16 -26 ? ? ? A . n C 3 17 TYR 17 -25 ? ? ? A . n C 3 18 LYS 18 -24 ? ? ? A . n C 3 19 ASP 19 -23 ? ? ? A . n C 3 20 HIS 20 -22 ? ? ? A . n C 3 21 ASP 21 -21 ? ? ? A . n C 3 22 ILE 22 -20 ? ? ? A . n C 3 23 ASP 23 -19 ? ? ? A . n C 3 24 TYR 24 -18 ? ? ? A . n C 3 25 LYS 25 -17 ? ? ? A . n C 3 26 ASP 26 -16 ? ? ? A . n C 3 27 ASP 27 -15 ? ? ? A . n C 3 28 ASP 28 -14 ? ? ? A . n C 3 29 ASP 29 -13 ? ? ? A . n C 3 30 LYS 30 -12 ? ? ? A . n C 3 31 GLU 31 -11 ? ? ? A . n C 3 32 ASN 32 -10 ? ? ? A . n C 3 33 LEU 33 -9 ? ? ? A . n C 3 34 TYR 34 -8 ? ? ? A . n C 3 35 PHE 35 -7 ? ? ? A . n C 3 36 GLN 36 -6 ? ? ? A . n C 3 37 GLY 37 -5 ? ? ? A . n C 3 38 GLY 38 -4 ? ? ? A . n C 3 39 GLY 39 -3 ? ? ? A . n C 3 40 GLY 40 -2 ? ? ? A . n C 3 41 GLY 41 -1 ? ? ? A . n C 3 42 SER 42 0 ? ? ? A . n C 3 43 ASP 43 1 ? ? ? A . n C 3 44 PRO 44 2 ? ? ? A . n C 3 45 ALA 45 3 ? ? ? A . n C 3 46 ARG 46 4 ? ? ? A . n C 3 47 ALA 47 5 ? ? ? A . n C 3 48 LEU 48 6 ? ? ? A . n C 3 49 LEU 49 7 ? ? ? A . n C 3 50 PRO 50 8 ? ? ? A . n C 3 51 ARG 51 9 ? ? ? A . n C 3 52 ARG 52 10 ? ? ? A . n C 3 53 MET 53 11 ? ? ? A . n C 3 54 GLY 54 12 12 GLY GLY A . n C 3 55 HIS 55 13 13 HIS HIS A . n C 3 56 ARG 56 14 14 ARG ARG A . n C 3 57 THR 57 15 15 THR THR A . n C 3 58 LEU 58 16 16 LEU LEU A . n C 3 59 ALA 59 17 17 ALA ALA A . n C 3 60 SER 60 18 18 SER SER A . n C 3 61 THR 61 19 19 THR THR A . n C 3 62 PRO 62 20 20 PRO PRO A . n C 3 63 ALA 63 21 21 ALA ALA A . n C 3 64 LEU 64 22 22 LEU LEU A . n C 3 65 TRP 65 23 23 TRP TRP A . n C 3 66 ALA 66 24 24 ALA ALA A . n C 3 67 SER 67 25 25 SER SER A . n C 3 68 ILE 68 26 26 ILE ILE A . n C 3 69 PRO 69 27 27 PRO PRO A . n C 3 70 CYS 70 28 28 CYS CYS A . n C 3 71 PRO 71 29 29 PRO PRO A . n C 3 72 ARG 72 30 30 ARG ARG A . n C 3 73 SER 73 31 31 SER SER A . n C 3 74 GLU 74 32 32 GLU GLU A . n C 3 75 LEU 75 33 33 LEU LEU A . n C 3 76 ARG 76 34 34 ARG ARG A . n C 3 77 LEU 77 35 35 LEU LEU A . n C 3 78 ASP 78 36 36 ASP ASP A . n C 3 79 LEU 79 37 37 LEU LEU A . n C 3 80 VAL 80 38 38 VAL VAL A . n C 3 81 LEU 81 39 39 LEU LEU A . n C 3 82 PRO 82 40 40 PRO PRO A . n C 3 83 SER 83 41 41 SER SER A . n C 3 84 GLY 84 42 42 GLY GLY A . n C 3 85 GLN 85 43 43 GLN GLN A . n C 3 86 SER 86 44 44 SER SER A . n C 3 87 PHE 87 45 45 PHE PHE A . n C 3 88 ARG 88 46 46 ARG ARG A . n C 3 89 TRP 89 47 47 TRP TRP A . n C 3 90 ARG 90 48 48 ARG ARG A . n C 3 91 GLU 91 49 49 GLU GLU A . n C 3 92 GLN 92 50 50 GLN GLN A . n C 3 93 SER 93 51 51 SER SER A . n C 3 94 PRO 94 52 52 PRO PRO A . n C 3 95 ALA 95 53 53 ALA ALA A . n C 3 96 HIS 96 54 54 HIS HIS A . n C 3 97 TRP 97 55 55 TRP TRP A . n C 3 98 SER 98 56 56 SER SER A . n C 3 99 GLY 99 57 57 GLY GLY A . n C 3 100 VAL 100 58 58 VAL VAL A . n C 3 101 LEU 101 59 59 LEU LEU A . n C 3 102 ALA 102 60 60 ALA ALA A . n C 3 103 ASP 103 61 61 ASP ASP A . n C 3 104 GLN 104 62 62 GLN GLN A . n C 3 105 VAL 105 63 63 VAL VAL A . n C 3 106 TRP 106 64 64 TRP TRP A . n C 3 107 THR 107 65 65 THR THR A . n C 3 108 LEU 108 66 66 LEU LEU A . n C 3 109 THR 109 67 67 THR THR A . n C 3 110 GLN 110 68 68 GLN GLN A . n C 3 111 THR 111 69 69 THR THR A . n C 3 112 GLU 112 70 70 GLU GLU A . n C 3 113 GLU 113 71 71 GLU GLU A . n C 3 114 GLN 114 72 72 GLN GLN A . n C 3 115 LEU 115 73 73 LEU LEU A . n C 3 116 HIS 116 74 74 HIS HIS A . n C 3 117 CYS 117 75 75 CYS CYS A . n C 3 118 THR 118 76 76 THR THR A . n C 3 119 VAL 119 77 77 VAL VAL A . n C 3 120 TYR 120 78 78 TYR TYR A . n C 3 121 ARG 121 79 79 ARG ARG A . n C 3 122 GLY 122 80 ? ? ? A . n C 3 123 ASP 123 81 ? ? ? A . n C 3 124 LYS 124 82 ? ? ? A . n C 3 125 SER 125 83 83 SER SER A . n C 3 126 GLN 126 84 84 GLN GLN A . n C 3 127 ALA 127 85 85 ALA ALA A . n C 3 128 SER 128 86 86 SER SER A . n C 3 129 ARG 129 87 87 ARG ARG A . n C 3 130 PRO 130 88 88 PRO PRO A . n C 3 131 THR 131 89 89 THR THR A . n C 3 132 PRO 132 90 90 PRO PRO A . n C 3 133 ASP 133 91 91 ASP ASP A . n C 3 134 GLU 134 92 92 GLU GLU A . n C 3 135 LEU 135 93 93 LEU LEU A . n C 3 136 GLU 136 94 94 GLU GLU A . n C 3 137 ALA 137 95 95 ALA ALA A . n C 3 138 VAL 138 96 96 VAL VAL A . n C 3 139 ARG 139 97 97 ARG ARG A . n C 3 140 LYS 140 98 98 LYS LYS A . n C 3 141 TYR 141 99 99 TYR TYR A . n C 3 142 PHE 142 100 100 PHE PHE A . n C 3 143 GLN 143 101 101 GLN GLN A . n C 3 144 LEU 144 102 102 LEU LEU A . n C 3 145 ASP 145 103 103 ASP ASP A . n C 3 146 VAL 146 104 104 VAL VAL A . n C 3 147 THR 147 105 105 THR THR A . n C 3 148 LEU 148 106 106 LEU LEU A . n C 3 149 ALA 149 107 107 ALA ALA A . n C 3 150 GLN 150 108 108 GLN GLN A . n C 3 151 LEU 151 109 109 LEU LEU A . n C 3 152 TYR 152 110 110 TYR TYR A . n C 3 153 HIS 153 111 111 HIS HIS A . n C 3 154 HIS 154 112 112 HIS HIS A . n C 3 155 TRP 155 113 113 TRP TRP A . n C 3 156 GLY 156 114 114 GLY GLY A . n C 3 157 SER 157 115 115 SER SER A . n C 3 158 VAL 158 116 116 VAL VAL A . n C 3 159 ASP 159 117 117 ASP ASP A . n C 3 160 SER 160 118 118 SER SER A . n C 3 161 HIS 161 119 119 HIS HIS A . n C 3 162 PHE 162 120 120 PHE PHE A . n C 3 163 GLN 163 121 121 GLN GLN A . n C 3 164 GLU 164 122 122 GLU GLU A . n C 3 165 VAL 165 123 123 VAL VAL A . n C 3 166 ALA 166 124 124 ALA ALA A . n C 3 167 GLN 167 125 125 GLN GLN A . n C 3 168 LYS 168 126 126 LYS LYS A . n C 3 169 PHE 169 127 127 PHE PHE A . n C 3 170 GLN 170 128 128 GLN GLN A . n C 3 171 GLY 171 129 129 GLY GLY A . n C 3 172 VAL 172 130 130 VAL VAL A . n C 3 173 ARG 173 131 131 ARG ARG A . n C 3 174 LEU 174 132 132 LEU LEU A . n C 3 175 LEU 175 133 133 LEU LEU A . n C 3 176 ARG 176 134 134 ARG ARG A . n C 3 177 GLN 177 135 135 GLN GLN A . n C 3 178 ASP 178 136 136 ASP ASP A . n C 3 179 PRO 179 137 137 PRO PRO A . n C 3 180 ILE 180 138 138 ILE ILE A . n C 3 181 GLU 181 139 139 GLU GLU A . n C 3 182 CYS 182 140 140 CYS CYS A . n C 3 183 LEU 183 141 141 LEU LEU A . n C 3 184 PHE 184 142 142 PHE PHE A . n C 3 185 SER 185 143 143 SER SER A . n C 3 186 PHE 186 144 144 PHE PHE A . n C 3 187 ILE 187 145 145 ILE ILE A . n C 3 188 CYS 188 146 146 CYS CYS A . n C 3 189 SER 189 147 147 SER SER A . n C 3 190 SER 190 148 148 SER SER A . n C 3 191 ASN 191 149 149 ASN ASN A . n C 3 192 ASN 192 150 150 ASN ASN A . n C 3 193 ASN 193 151 151 ASN ASN A . n C 3 194 ILE 194 152 152 ILE ILE A . n C 3 195 ALA 195 153 153 ALA ALA A . n C 3 196 ARG 196 154 154 ARG ARG A . n C 3 197 ILE 197 155 155 ILE ILE A . n C 3 198 THR 198 156 156 THR THR A . n C 3 199 GLY 199 157 157 GLY GLY A . n C 3 200 MET 200 158 158 MET MET A . n C 3 201 VAL 201 159 159 VAL VAL A . n C 3 202 GLU 202 160 160 GLU GLU A . n C 3 203 ARG 203 161 161 ARG ARG A . n C 3 204 LEU 204 162 162 LEU LEU A . n C 3 205 CYS 205 163 163 CYS CYS A . n C 3 206 GLN 206 164 164 GLN GLN A . n C 3 207 ALA 207 165 165 ALA ALA A . n C 3 208 PHE 208 166 166 PHE PHE A . n C 3 209 GLY 209 167 167 GLY GLY A . n C 3 210 PRO 210 168 168 PRO PRO A . n C 3 211 ARG 211 169 169 ARG ARG A . n C 3 212 LEU 212 170 170 LEU LEU A . n C 3 213 ILE 213 171 171 ILE ILE A . n C 3 214 GLN 214 172 172 GLN GLN A . n C 3 215 LEU 215 173 173 LEU LEU A . n C 3 216 ASP 216 174 174 ASP ASP A . n C 3 217 ASP 217 175 175 ASP ASP A . n C 3 218 VAL 218 176 176 VAL VAL A . n C 3 219 THR 219 177 177 THR THR A . n C 3 220 TYR 220 178 178 TYR TYR A . n C 3 221 HIS 221 179 179 HIS HIS A . n C 3 222 GLY 222 180 180 GLY GLY A . n C 3 223 PHE 223 181 181 PHE PHE A . n C 3 224 PRO 224 182 182 PRO PRO A . n C 3 225 SER 225 183 183 SER SER A . n C 3 226 LEU 226 184 184 LEU LEU A . n C 3 227 GLN 227 185 185 GLN GLN A . n C 3 228 ALA 228 186 186 ALA ALA A . n C 3 229 LEU 229 187 187 LEU LEU A . n C 3 230 ALA 230 188 188 ALA ALA A . n C 3 231 GLY 231 189 189 GLY GLY A . n C 3 232 PRO 232 190 190 PRO PRO A . n C 3 233 GLU 233 191 191 GLU GLU A . n C 3 234 VAL 234 192 192 VAL VAL A . n C 3 235 GLU 235 193 193 GLU GLU A . n C 3 236 ALA 236 194 194 ALA ALA A . n C 3 237 HIS 237 195 195 HIS HIS A . n C 3 238 LEU 238 196 196 LEU LEU A . n C 3 239 ARG 239 197 197 ARG ARG A . n C 3 240 LYS 240 198 198 LYS LYS A . n C 3 241 LEU 241 199 199 LEU LEU A . n C 3 242 GLY 242 200 200 GLY GLY A . n C 3 243 LEU 243 201 201 LEU LEU A . n C 3 244 GLY 244 202 202 GLY GLY A . n C 3 245 TYR 245 203 203 TYR TYR A . n C 3 246 ARG 246 204 204 ARG ARG A . n C 3 247 ALA 247 205 205 ALA ALA A . n C 3 248 ARG 248 206 206 ARG ARG A . n C 3 249 TYR 249 207 207 TYR TYR A . n C 3 250 VAL 250 208 208 VAL VAL A . n C 3 251 SER 251 209 209 SER SER A . n C 3 252 ALA 252 210 210 ALA ALA A . n C 3 253 SER 253 211 211 SER SER A . n C 3 254 ALA 254 212 212 ALA ALA A . n C 3 255 ARG 255 213 213 ARG ARG A . n C 3 256 ALA 256 214 214 ALA ALA A . n C 3 257 ILE 257 215 215 ILE ILE A . n C 3 258 LEU 258 216 216 LEU LEU A . n C 3 259 GLU 259 217 217 GLU GLU A . n C 3 260 GLU 260 218 218 GLU GLU A . n C 3 261 GLN 261 219 219 GLN GLN A . n C 3 262 GLY 262 220 220 GLY GLY A . n C 3 263 GLY 263 221 221 GLY GLY A . n C 3 264 LEU 264 222 222 LEU LEU A . n C 3 265 ALA 265 223 223 ALA ALA A . n C 3 266 TRP 266 224 224 TRP TRP A . n C 3 267 LEU 267 225 225 LEU LEU A . n C 3 268 GLN 268 226 226 GLN GLN A . n C 3 269 GLN 269 227 227 GLN GLN A . n C 3 270 LEU 270 228 228 LEU LEU A . n C 3 271 ARG 271 229 229 ARG ARG A . n C 3 272 GLU 272 230 230 GLU GLU A . n C 3 273 SER 273 231 231 SER SER A . n C 3 274 SER 274 232 232 SER SER A . n C 3 275 TYR 275 233 233 TYR TYR A . n C 3 276 GLU 276 234 234 GLU GLU A . n C 3 277 GLU 277 235 235 GLU GLU A . n C 3 278 ALA 278 236 236 ALA ALA A . n C 3 279 HIS 279 237 237 HIS HIS A . n C 3 280 LYS 280 238 238 LYS LYS A . n C 3 281 ALA 281 239 239 ALA ALA A . n C 3 282 LEU 282 240 240 LEU LEU A . n C 3 283 CYS 283 241 241 CYS CYS A . n C 3 284 ILE 284 242 242 ILE ILE A . n C 3 285 LEU 285 243 243 LEU LEU A . n C 3 286 PRO 286 244 244 PRO PRO A . n C 3 287 GLY 287 245 245 GLY GLY A . n C 3 288 VAL 288 246 246 VAL VAL A . n C 3 289 GLY 289 247 247 GLY GLY A . n C 3 290 THR 290 248 248 THR THR A . n C 3 291 GLN 291 249 249 GLN GLN A . n C 3 292 VAL 292 250 250 VAL VAL A . n C 3 293 ALA 293 251 251 ALA ALA A . n C 3 294 ASP 294 252 252 ASP ASP A . n C 3 295 CYS 295 253 253 CYS CYS A . n C 3 296 ILE 296 254 254 ILE ILE A . n C 3 297 CYS 297 255 255 CYS CYS A . n C 3 298 LEU 298 256 256 LEU LEU A . n C 3 299 MET 299 257 257 MET MET A . n C 3 300 ALA 300 258 258 ALA ALA A . n C 3 301 LEU 301 259 259 LEU LEU A . n C 3 302 ASP 302 260 260 ASP ASP A . n C 3 303 LYS 303 261 261 LYS LYS A . n C 3 304 PRO 304 262 262 PRO PRO A . n C 3 305 GLN 305 263 263 GLN GLN A . n C 3 306 ALA 306 264 264 ALA ALA A . n C 3 307 VAL 307 265 265 VAL VAL A . n C 3 308 PRO 308 266 266 PRO PRO A . n C 3 309 VAL 309 267 267 VAL VAL A . n C 3 310 ASP 310 268 268 ASP ASP A . n C 3 311 VAL 311 269 269 VAL VAL A . n C 3 312 HIS 312 270 270 HIS HIS A . n C 3 313 MET 313 271 271 MET MET A . n C 3 314 TRP 314 272 272 TRP TRP A . n C 3 315 HIS 315 273 273 HIS HIS A . n C 3 316 ILE 316 274 274 ILE ILE A . n C 3 317 ALA 317 275 275 ALA ALA A . n C 3 318 GLN 318 276 276 GLN GLN A . n C 3 319 ARG 319 277 277 ARG ARG A . n C 3 320 ASP 320 278 278 ASP ASP A . n C 3 321 TYR 321 279 279 TYR TYR A . n C 3 322 SER 322 280 280 SER SER A . n C 3 323 TRP 323 281 281 TRP TRP A . n C 3 324 HIS 324 282 282 HIS HIS A . n C 3 325 PRO 325 283 283 PRO PRO A . n C 3 326 THR 326 284 284 THR THR A . n C 3 327 THR 327 285 285 THR THR A . n C 3 328 SER 328 286 286 SER SER A . n C 3 329 GLN 329 287 287 GLN GLN A . n C 3 330 ALA 330 288 288 ALA ALA A . n C 3 331 LYS 331 289 289 LYS LYS A . n C 3 332 GLY 332 290 290 GLY GLY A . n C 3 333 PRO 333 291 291 PRO PRO A . n C 3 334 SER 334 292 292 SER SER A . n C 3 335 PRO 335 293 293 PRO PRO A . n C 3 336 GLN 336 294 294 GLN GLN A . n C 3 337 THR 337 295 295 THR THR A . n C 3 338 ASN 338 296 296 ASN ASN A . n C 3 339 LYS 339 297 297 LYS LYS A . n C 3 340 GLU 340 298 298 GLU GLU A . n C 3 341 LEU 341 299 299 LEU LEU A . n C 3 342 GLY 342 300 300 GLY GLY A . n C 3 343 ASN 343 301 301 ASN ASN A . n C 3 344 PHE 344 302 302 PHE PHE A . n C 3 345 PHE 345 303 303 PHE PHE A . n C 3 346 ARG 346 304 304 ARG ARG A . n C 3 347 SER 347 305 305 SER SER A . n C 3 348 LEU 348 306 306 LEU LEU A . n C 3 349 TRP 349 307 307 TRP TRP A . n C 3 350 GLY 350 308 308 GLY GLY A . n C 3 351 PRO 351 309 309 PRO PRO A . n C 3 352 TYR 352 310 310 TYR TYR A . n C 3 353 ALA 353 311 311 ALA ALA A . n C 3 354 GLY 354 312 312 GLY GLY A . n C 3 355 TRP 355 313 313 TRP TRP A . n C 3 356 ALA 356 314 314 ALA ALA A . n C 3 357 GLN 357 315 315 GLN GLN A . n C 3 358 ALA 358 316 316 ALA ALA A . n C 3 359 VAL 359 317 317 VAL VAL A . n C 3 360 LEU 360 318 318 LEU LEU A . n C 3 361 PHE 361 319 319 PHE PHE A . n C 3 362 SER 362 320 320 SER SER A . n C 3 363 ALA 363 321 321 ALA ALA A . n C 3 364 ASP 364 322 322 ASP ASP A . n C 3 365 LEU 365 323 323 LEU LEU A . n C 3 366 ARG 366 324 324 ARG ARG A . n C 3 367 GLN 367 325 325 GLN GLN A . n C 3 368 SER 368 326 ? ? ? A . n C 3 369 ARG 369 327 ? ? ? A . n C 3 370 HIS 370 328 ? ? ? A . n C 3 371 ALA 371 329 ? ? ? A . n C 3 372 GLN 372 330 ? ? ? A . n C 3 373 GLU 373 331 ? ? ? A . n C 3 374 PRO 374 332 ? ? ? A . n C 3 375 PRO 375 333 ? ? ? A . n C 3 376 ALA 376 334 ? ? ? A . n C 3 377 LYS 377 335 ? ? ? A . n C 3 378 ARG 378 336 ? ? ? A . n C 3 379 ARG 379 337 ? ? ? A . n C 3 380 LYS 380 338 ? ? ? A . n C 3 381 GLY 381 339 ? ? ? A . n C 3 382 SER 382 340 ? ? ? A . n C 3 383 LYS 383 341 ? ? ? A . n C 3 384 GLY 384 342 ? ? ? A . n C 3 385 PRO 385 343 ? ? ? A . n C 3 386 GLU 386 344 ? ? ? A . n C 3 387 GLY 387 345 ? ? ? A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 8OG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 8OG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 71 ? CG ? C GLU 113 CG 2 1 Y 1 A GLU 71 ? CD ? C GLU 113 CD 3 1 Y 1 A GLU 71 ? OE1 ? C GLU 113 OE1 4 1 Y 1 A GLU 71 ? OE2 ? C GLU 113 OE2 5 1 Y 1 A GLN 84 ? CG ? C GLN 126 CG 6 1 Y 1 A GLN 84 ? CD ? C GLN 126 CD 7 1 Y 1 A GLN 84 ? OE1 ? C GLN 126 OE1 8 1 Y 1 A GLN 84 ? NE2 ? C GLN 126 NE2 9 1 Y 1 A ARG 87 ? CG ? C ARG 129 CG 10 1 Y 1 A ARG 87 ? CD ? C ARG 129 CD 11 1 Y 1 A ARG 87 ? NE ? C ARG 129 NE 12 1 Y 1 A ARG 87 ? CZ ? C ARG 129 CZ 13 1 Y 1 A ARG 87 ? NH1 ? C ARG 129 NH1 14 1 Y 1 A ARG 87 ? NH2 ? C ARG 129 NH2 15 1 Y 1 A GLU 122 ? CG ? C GLU 164 CG 16 1 Y 1 A GLU 122 ? CD ? C GLU 164 CD 17 1 Y 1 A GLU 122 ? OE1 ? C GLU 164 OE1 18 1 Y 1 A GLU 122 ? OE2 ? C GLU 164 OE2 19 1 Y 1 A GLN 125 ? CG ? C GLN 167 CG 20 1 Y 1 A GLN 125 ? CD ? C GLN 167 CD 21 1 Y 1 A GLN 125 ? OE1 ? C GLN 167 OE1 22 1 Y 1 A GLN 125 ? NE2 ? C GLN 167 NE2 23 1 Y 1 A GLN 128 ? CG ? C GLN 170 CG 24 1 Y 1 A GLN 128 ? CD ? C GLN 170 CD 25 1 Y 1 A GLN 128 ? OE1 ? C GLN 170 OE1 26 1 Y 1 A GLN 128 ? NE2 ? C GLN 170 NE2 27 1 Y 1 A ARG 134 ? CG ? C ARG 176 CG 28 1 Y 1 A ARG 134 ? CD ? C ARG 176 CD 29 1 Y 1 A ARG 134 ? NE ? C ARG 176 NE 30 1 Y 1 A ARG 134 ? CZ ? C ARG 176 CZ 31 1 Y 1 A ARG 134 ? NH1 ? C ARG 176 NH1 32 1 Y 1 A ARG 134 ? NH2 ? C ARG 176 NH2 33 1 Y 1 A GLN 164 ? CG ? C GLN 206 CG 34 1 Y 1 A GLN 164 ? CD ? C GLN 206 CD 35 1 Y 1 A GLN 164 ? OE1 ? C GLN 206 OE1 36 1 Y 1 A GLN 164 ? NE2 ? C GLN 206 NE2 37 1 Y 1 A GLN 227 ? CG ? C GLN 269 CG 38 1 Y 1 A GLN 227 ? CD ? C GLN 269 CD 39 1 Y 1 A GLN 227 ? OE1 ? C GLN 269 OE1 40 1 Y 1 A GLN 227 ? NE2 ? C GLN 269 NE2 41 1 Y 1 A SER 286 ? OG ? C SER 328 OG 42 1 Y 1 A LYS 289 ? CG ? C LYS 331 CG 43 1 Y 1 A LYS 289 ? CD ? C LYS 331 CD 44 1 Y 1 A LYS 289 ? CE ? C LYS 331 CE 45 1 Y 1 A LYS 289 ? NZ ? C LYS 331 NZ 46 1 Y 1 A GLN 294 ? CG ? C GLN 336 CG 47 1 Y 1 A GLN 294 ? CD ? C GLN 336 CD 48 1 Y 1 A GLN 294 ? OE1 ? C GLN 336 OE1 49 1 Y 1 A GLN 294 ? NE2 ? C GLN 336 NE2 50 1 Y 1 A GLN 325 ? CG ? C GLN 367 CG 51 1 Y 1 A GLN 325 ? CD ? C GLN 367 CD 52 1 Y 1 A GLN 325 ? OE1 ? C GLN 367 OE1 53 1 Y 1 A GLN 325 ? NE2 ? C GLN 367 NE2 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8VX4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VX4 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8VX4 _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.004 ? 3867 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.695 ? 5520 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 30.365 ? 926 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.041 ? 610 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.007 ? 500 ? f_plane_restr ? ? # _struct.entry_id 8VX4 _struct.title 'Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VX4 _struct_keywords.text 'Human OGG1 binding at 8-oxoG of a 35 bp DNA duplex, HYDROLASE, LYASE-DNA complex' _struct_keywords.pdbx_keywords 'HYDROLASE, LYASE/DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8VX4 8VX4 ? 1 ? 1 2 PDB 8VX4 8VX4 ? 2 ? 1 3 UNP OGG1_HUMAN O15527 ? 3 ;PARALLPRRMGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGD KSQASRPTPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVER LCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALC ILPGVGTKVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSA DLRQSRHAQEPPAKRRKGSKGPEG ; 0 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8VX4 C 1 ? 35 ? 8VX4 1 ? 35 ? 1 35 2 2 8VX4 B 1 ? 35 ? 8VX4 1 ? 35 ? 1 35 3 3 8VX4 A 44 ? 387 ? O15527 2 ? 345 ? 2 345 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 3 8VX4 MET A 1 ? UNP O15527 ? ? 'expression tag' -41 1 3 8VX4 GLY A 2 ? UNP O15527 ? ? 'expression tag' -40 2 3 8VX4 HIS A 3 ? UNP O15527 ? ? 'expression tag' -39 3 3 8VX4 HIS A 4 ? UNP O15527 ? ? 'expression tag' -38 4 3 8VX4 HIS A 5 ? UNP O15527 ? ? 'expression tag' -37 5 3 8VX4 HIS A 6 ? UNP O15527 ? ? 'expression tag' -36 6 3 8VX4 HIS A 7 ? UNP O15527 ? ? 'expression tag' -35 7 3 8VX4 HIS A 8 ? UNP O15527 ? ? 'expression tag' -34 8 3 8VX4 ASP A 9 ? UNP O15527 ? ? 'expression tag' -33 9 3 8VX4 TYR A 10 ? UNP O15527 ? ? 'expression tag' -32 10 3 8VX4 LYS A 11 ? UNP O15527 ? ? 'expression tag' -31 11 3 8VX4 ASP A 12 ? UNP O15527 ? ? 'expression tag' -30 12 3 8VX4 HIS A 13 ? UNP O15527 ? ? 'expression tag' -29 13 3 8VX4 ASP A 14 ? UNP O15527 ? ? 'expression tag' -28 14 3 8VX4 GLY A 15 ? UNP O15527 ? ? 'expression tag' -27 15 3 8VX4 ASP A 16 ? UNP O15527 ? ? 'expression tag' -26 16 3 8VX4 TYR A 17 ? UNP O15527 ? ? 'expression tag' -25 17 3 8VX4 LYS A 18 ? UNP O15527 ? ? 'expression tag' -24 18 3 8VX4 ASP A 19 ? UNP O15527 ? ? 'expression tag' -23 19 3 8VX4 HIS A 20 ? UNP O15527 ? ? 'expression tag' -22 20 3 8VX4 ASP A 21 ? UNP O15527 ? ? 'expression tag' -21 21 3 8VX4 ILE A 22 ? UNP O15527 ? ? 'expression tag' -20 22 3 8VX4 ASP A 23 ? UNP O15527 ? ? 'expression tag' -19 23 3 8VX4 TYR A 24 ? UNP O15527 ? ? 'expression tag' -18 24 3 8VX4 LYS A 25 ? UNP O15527 ? ? 'expression tag' -17 25 3 8VX4 ASP A 26 ? UNP O15527 ? ? 'expression tag' -16 26 3 8VX4 ASP A 27 ? UNP O15527 ? ? 'expression tag' -15 27 3 8VX4 ASP A 28 ? UNP O15527 ? ? 'expression tag' -14 28 3 8VX4 ASP A 29 ? UNP O15527 ? ? 'expression tag' -13 29 3 8VX4 LYS A 30 ? UNP O15527 ? ? 'expression tag' -12 30 3 8VX4 GLU A 31 ? UNP O15527 ? ? 'expression tag' -11 31 3 8VX4 ASN A 32 ? UNP O15527 ? ? 'expression tag' -10 32 3 8VX4 LEU A 33 ? UNP O15527 ? ? 'expression tag' -9 33 3 8VX4 TYR A 34 ? UNP O15527 ? ? 'expression tag' -8 34 3 8VX4 PHE A 35 ? UNP O15527 ? ? 'expression tag' -7 35 3 8VX4 GLN A 36 ? UNP O15527 ? ? 'expression tag' -6 36 3 8VX4 GLY A 37 ? UNP O15527 ? ? 'expression tag' -5 37 3 8VX4 GLY A 38 ? UNP O15527 ? ? 'expression tag' -4 38 3 8VX4 GLY A 39 ? UNP O15527 ? ? 'expression tag' -3 39 3 8VX4 GLY A 40 ? UNP O15527 ? ? 'expression tag' -2 40 3 8VX4 GLY A 41 ? UNP O15527 ? ? 'expression tag' -1 41 3 8VX4 SER A 42 ? UNP O15527 ? ? 'expression tag' 0 42 3 8VX4 ASP A 43 ? UNP O15527 ? ? 'expression tag' 1 43 3 8VX4 GLN A 291 ? UNP O15527 LYS 249 'engineered mutation' 249 44 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ARG C 76 ? VAL C 80 ? ARG A 34 VAL A 38 5 ? 5 HELX_P HELX_P2 AA2 THR C 131 ? GLN C 143 ? THR A 89 GLN A 101 1 ? 13 HELX_P HELX_P3 AA3 LEU C 148 ? ASP C 159 ? LEU A 106 ASP A 117 1 ? 12 HELX_P HELX_P4 AA4 ASP C 159 ? ALA C 166 ? ASP A 117 ALA A 124 1 ? 8 HELX_P HELX_P5 AA5 ASP C 178 ? CYS C 188 ? ASP A 136 CYS A 146 1 ? 11 HELX_P HELX_P6 AA6 ASN C 193 ? GLY C 209 ? ASN A 151 GLY A 167 1 ? 17 HELX_P HELX_P7 AA7 SER C 225 ? ALA C 230 ? SER A 183 ALA A 188 1 ? 6 HELX_P HELX_P8 AA8 GLU C 233 ? GLY C 242 ? GLU A 191 GLY A 200 1 ? 10 HELX_P HELX_P9 AA9 TYR C 245 ? ALA C 252 ? TYR A 203 ALA A 210 1 ? 8 HELX_P HELX_P10 AB1 ALA C 254 ? GLU C 259 ? ALA A 212 GLU A 217 1 ? 6 HELX_P HELX_P11 AB2 GLY C 262 ? GLN C 269 ? GLY A 220 GLN A 227 1 ? 8 HELX_P HELX_P12 AB3 LEU C 270 ? SER C 273 ? LEU A 228 SER A 231 5 ? 4 HELX_P HELX_P13 AB4 SER C 274 ? LEU C 285 ? SER A 232 LEU A 243 1 ? 12 HELX_P HELX_P14 AB5 GLY C 289 ? ALA C 300 ? GLY A 247 ALA A 258 1 ? 12 HELX_P HELX_P15 AB6 ASP C 310 ? TYR C 321 ? ASP A 268 TYR A 279 1 ? 12 HELX_P HELX_P16 AB7 SER C 334 ? GLY C 350 ? SER A 292 GLY A 308 1 ? 17 HELX_P HELX_P17 AB8 TYR C 352 ? ARG C 366 ? TYR A 310 ARG A 324 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 17 "O3'" ? ? ? 1_555 A 8OG 18 P ? ? C DC 17 C 8OG 18 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale2 covale both ? A 8OG 18 "O3'" ? ? ? 1_555 A DC 19 P ? ? C 8OG 18 C DC 19 1_555 ? ? ? ? ? ? ? 1.604 ? ? hydrog1 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 33 N3 ? ? C DG 3 B DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 33 O2 ? ? C DG 3 B DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 33 N4 ? ? C DG 3 B DC 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 32 N1 ? ? C DC 4 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 32 O6 ? ? C DC 4 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 32 N2 ? ? C DC 4 B DG 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 31 N2 ? ? C DC 5 B DG 31 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog8 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 30 N1 ? ? C DT 6 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 30 N6 ? ? C DT 6 B DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 29 N1 ? ? C DC 7 B DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 29 O6 ? ? C DC 7 B DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 29 N2 ? ? C DC 7 B DG 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 28 N3 ? ? C DG 8 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 28 O2 ? ? C DG 8 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 28 N4 ? ? C DG 8 B DC 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 27 N1 ? ? C DC 9 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 27 O6 ? ? C DC 9 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 27 N2 ? ? C DC 9 B DG 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 10 N1 ? ? ? 1_555 B DT 26 N3 ? ? C DA 10 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 10 N6 ? ? ? 1_555 B DT 26 O4 ? ? C DA 10 B DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 11 N1 ? ? ? 1_555 B DC 25 N3 ? ? C DG 11 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 11 N2 ? ? ? 1_555 B DC 25 O2 ? ? C DG 11 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 11 O6 ? ? ? 1_555 B DC 25 N4 ? ? C DG 11 B DC 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 12 N1 ? ? ? 1_555 B DT 24 N3 ? ? C DA 12 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 12 N6 ? ? ? 1_555 B DT 24 O4 ? ? C DA 12 B DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 13 N1 ? ? ? 1_555 B DT 23 N3 ? ? C DA 13 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DA 13 N6 ? ? ? 1_555 B DT 23 O4 ? ? C DA 13 B DT 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 14 N3 ? ? ? 1_555 B DA 22 N1 ? ? C DT 14 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DT 14 O4 ? ? ? 1_555 B DA 22 N6 ? ? C DT 14 B DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 21 N1 ? ? C DC 15 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 21 O6 ? ? C DC 15 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 21 N2 ? ? C DC 15 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 16 N3 ? ? ? 1_555 B DG 20 N1 ? ? C DC 16 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 16 N4 ? ? ? 1_555 B DG 20 O6 ? ? C DC 16 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 16 O2 ? ? ? 1_555 B DG 20 N2 ? ? C DC 16 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 17 N3 ? ? ? 1_555 B DG 19 N1 ? ? C DC 17 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 17 N4 ? ? ? 1_555 B DG 19 O6 ? ? C DC 17 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 17 O2 ? ? ? 1_555 B DG 19 N2 ? ? C DC 17 B DG 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 19 N3 ? ? ? 1_555 B DG 17 N1 ? ? C DC 19 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 19 N4 ? ? ? 1_555 B DG 17 O6 ? ? C DC 19 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DC 19 O2 ? ? ? 1_555 B DG 17 N2 ? ? C DC 19 B DG 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 20 N3 ? ? ? 1_555 B DA 16 N1 ? ? C DT 20 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DT 20 O4 ? ? ? 1_555 B DA 16 N6 ? ? C DT 20 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 21 N1 ? ? ? 1_555 B DC 15 N3 ? ? C DG 21 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 21 N2 ? ? ? 1_555 B DC 15 O2 ? ? C DG 21 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A DG 21 O6 ? ? ? 1_555 B DC 15 N4 ? ? C DG 21 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A DC 22 N3 ? ? ? 1_555 B DG 14 N1 ? ? C DC 22 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A DC 22 N4 ? ? ? 1_555 B DG 14 O6 ? ? C DC 22 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A DC 22 O2 ? ? ? 1_555 B DG 14 N2 ? ? C DC 22 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A DC 23 N3 ? ? ? 1_555 B DG 13 N1 ? ? C DC 23 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A DC 23 N4 ? ? ? 1_555 B DG 13 O6 ? ? C DC 23 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A DC 23 O2 ? ? ? 1_555 B DG 13 N2 ? ? C DC 23 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A DC 23 N3 ? ? ? 1_555 B DG 14 N2 ? ? C DC 23 B DG 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog54 hydrog ? ? A DC 23 O2 ? ? ? 1_555 B DG 14 N1 ? ? C DC 23 B DG 14 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog55 hydrog ? ? A DG 24 N1 ? ? ? 1_555 B DC 12 N3 ? ? C DG 24 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A DG 24 N2 ? ? ? 1_555 B DC 12 O2 ? ? C DG 24 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A DG 24 O6 ? ? ? 1_555 B DC 12 N4 ? ? C DG 24 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A DA 25 N1 ? ? ? 1_555 B DT 11 N3 ? ? C DA 25 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A DA 25 N6 ? ? ? 1_555 B DT 11 O4 ? ? C DA 25 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A DG 26 N1 ? ? ? 1_555 B DC 10 N3 ? ? C DG 26 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A DG 26 N2 ? ? ? 1_555 B DC 10 O2 ? ? C DG 26 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A DG 26 O6 ? ? ? 1_555 B DC 10 N4 ? ? C DG 26 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A DG 27 N1 ? ? ? 1_555 B DC 9 N3 ? ? C DG 27 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A DG 27 N2 ? ? ? 1_555 B DC 9 O2 ? ? C DG 27 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A DG 27 O6 ? ? ? 1_555 B DC 9 N4 ? ? C DG 27 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A DC 28 N3 ? ? ? 1_555 B DG 8 N1 ? ? C DC 28 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A DC 28 N4 ? ? ? 1_555 B DG 8 O6 ? ? C DC 28 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A DC 28 O2 ? ? ? 1_555 B DG 8 N2 ? ? C DC 28 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A DC 29 N3 ? ? ? 1_555 B DG 7 N1 ? ? C DC 29 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A DC 29 N4 ? ? ? 1_555 B DG 7 O6 ? ? C DC 29 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A DC 29 O2 ? ? ? 1_555 B DG 7 N2 ? ? C DC 29 B DG 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A DG 30 O6 ? ? ? 1_555 B DC 6 N4 ? ? C DG 30 B DC 6 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog73 hydrog ? ? A DC 31 N3 ? ? ? 1_555 B DG 5 N2 ? ? C DC 31 B DG 5 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog74 hydrog ? ? A DT 32 N3 ? ? ? 1_555 B DA 4 N3 ? ? C DT 32 B DA 4 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 4 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA C 66 ? PRO C 69 ? ALA A 24 PRO A 27 AA1 2 GLN C 114 ? TYR C 120 ? GLN A 72 TYR A 78 AA1 3 GLN C 104 ? GLN C 110 ? GLN A 62 GLN A 68 AA1 4 TRP C 97 ? LEU C 101 ? TRP A 55 LEU A 59 AA2 1 ARG C 211 ? GLN C 214 ? ARG A 169 GLN A 172 AA2 2 THR C 219 ? HIS C 221 ? THR A 177 HIS A 179 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE C 68 ? N ILE A 26 O LEU C 115 ? O LEU A 73 AA1 2 3 O THR C 118 ? O THR A 76 N THR C 107 ? N THR A 65 AA1 3 4 O GLN C 104 ? O GLN A 62 N LEU C 101 ? N LEU A 59 AA2 1 2 N LEU C 212 ? N LEU A 170 O TYR C 220 ? O TYR A 178 # _pdbx_entry_details.entry_id 8VX4 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 41 ? ? -95.19 34.36 2 1 ARG A 87 ? ? 53.78 75.52 3 1 ASP A 174 ? ? 72.73 -12.88 4 1 ASP A 175 ? ? -136.21 -42.19 5 1 GLU A 191 ? ? 69.25 -7.64 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8VX4 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_reconstruction.entry_id 8VX4 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 2144984 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Complex of Human OGG1 with a 35 bp DNA duplex containing 8-oxoG' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2, 3' # _em_imaging.entry_id 8VX4 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1000 _em_imaging.nominal_defocus_max 2000 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter 100 _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8VX4 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8VX4 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C DA 1 ? A DA 1 2 1 Y 1 C DT 2 ? A DT 2 3 1 Y 1 C DC 33 ? A DC 33 4 1 Y 1 C DA 34 ? A DA 34 5 1 Y 1 C DA 35 ? A DA 35 6 1 Y 1 B DT 1 ? B DT 1 7 1 Y 1 B DT 2 ? B DT 2 8 1 Y 1 B DG 3 ? B DG 3 9 1 Y 1 B DA 34 ? B DA 34 10 1 Y 1 B DT 35 ? B DT 35 11 1 Y 1 A MET -41 ? C MET 1 12 1 Y 1 A GLY -40 ? C GLY 2 13 1 Y 1 A HIS -39 ? C HIS 3 14 1 Y 1 A HIS -38 ? C HIS 4 15 1 Y 1 A HIS -37 ? C HIS 5 16 1 Y 1 A HIS -36 ? C HIS 6 17 1 Y 1 A HIS -35 ? C HIS 7 18 1 Y 1 A HIS -34 ? C HIS 8 19 1 Y 1 A ASP -33 ? C ASP 9 20 1 Y 1 A TYR -32 ? C TYR 10 21 1 Y 1 A LYS -31 ? C LYS 11 22 1 Y 1 A ASP -30 ? C ASP 12 23 1 Y 1 A HIS -29 ? C HIS 13 24 1 Y 1 A ASP -28 ? C ASP 14 25 1 Y 1 A GLY -27 ? C GLY 15 26 1 Y 1 A ASP -26 ? C ASP 16 27 1 Y 1 A TYR -25 ? C TYR 17 28 1 Y 1 A LYS -24 ? C LYS 18 29 1 Y 1 A ASP -23 ? C ASP 19 30 1 Y 1 A HIS -22 ? C HIS 20 31 1 Y 1 A ASP -21 ? C ASP 21 32 1 Y 1 A ILE -20 ? C ILE 22 33 1 Y 1 A ASP -19 ? C ASP 23 34 1 Y 1 A TYR -18 ? C TYR 24 35 1 Y 1 A LYS -17 ? C LYS 25 36 1 Y 1 A ASP -16 ? C ASP 26 37 1 Y 1 A ASP -15 ? C ASP 27 38 1 Y 1 A ASP -14 ? C ASP 28 39 1 Y 1 A ASP -13 ? C ASP 29 40 1 Y 1 A LYS -12 ? C LYS 30 41 1 Y 1 A GLU -11 ? C GLU 31 42 1 Y 1 A ASN -10 ? C ASN 32 43 1 Y 1 A LEU -9 ? C LEU 33 44 1 Y 1 A TYR -8 ? C TYR 34 45 1 Y 1 A PHE -7 ? C PHE 35 46 1 Y 1 A GLN -6 ? C GLN 36 47 1 Y 1 A GLY -5 ? C GLY 37 48 1 Y 1 A GLY -4 ? C GLY 38 49 1 Y 1 A GLY -3 ? C GLY 39 50 1 Y 1 A GLY -2 ? C GLY 40 51 1 Y 1 A GLY -1 ? C GLY 41 52 1 Y 1 A SER 0 ? C SER 42 53 1 Y 1 A ASP 1 ? C ASP 43 54 1 Y 1 A PRO 2 ? C PRO 44 55 1 Y 1 A ALA 3 ? C ALA 45 56 1 Y 1 A ARG 4 ? C ARG 46 57 1 Y 1 A ALA 5 ? C ALA 47 58 1 Y 1 A LEU 6 ? C LEU 48 59 1 Y 1 A LEU 7 ? C LEU 49 60 1 Y 1 A PRO 8 ? C PRO 50 61 1 Y 1 A ARG 9 ? C ARG 51 62 1 Y 1 A ARG 10 ? C ARG 52 63 1 Y 1 A MET 11 ? C MET 53 64 1 Y 1 A GLY 80 ? C GLY 122 65 1 Y 1 A ASP 81 ? C ASP 123 66 1 Y 1 A LYS 82 ? C LYS 124 67 1 Y 1 A SER 326 ? C SER 368 68 1 Y 1 A ARG 327 ? C ARG 369 69 1 Y 1 A HIS 328 ? C HIS 370 70 1 Y 1 A ALA 329 ? C ALA 371 71 1 Y 1 A GLN 330 ? C GLN 372 72 1 Y 1 A GLU 331 ? C GLU 373 73 1 Y 1 A PRO 332 ? C PRO 374 74 1 Y 1 A PRO 333 ? C PRO 375 75 1 Y 1 A ALA 334 ? C ALA 376 76 1 Y 1 A LYS 335 ? C LYS 377 77 1 Y 1 A ARG 336 ? C ARG 378 78 1 Y 1 A ARG 337 ? C ARG 379 79 1 Y 1 A LYS 338 ? C LYS 380 80 1 Y 1 A GLY 339 ? C GLY 381 81 1 Y 1 A SER 340 ? C SER 382 82 1 Y 1 A LYS 341 ? C LYS 383 83 1 Y 1 A GLY 342 ? C GLY 384 84 1 Y 1 A PRO 343 ? C PRO 385 85 1 Y 1 A GLU 344 ? C GLU 386 86 1 Y 1 A GLY 345 ? C GLY 387 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 8OG OP3 O N N 1 8OG P P N N 2 8OG OP1 O N N 3 8OG OP2 O N N 4 8OG "O5'" O N N 5 8OG "C5'" C N N 6 8OG "C4'" C N R 7 8OG "O4'" O N N 8 8OG "C3'" C N S 9 8OG "O3'" O N N 10 8OG "C2'" C N N 11 8OG "C1'" C N R 12 8OG N9 N N N 13 8OG C8 C N N 14 8OG N7 N N N 15 8OG C5 C N N 16 8OG C6 C N N 17 8OG O6 O N N 18 8OG N1 N N N 19 8OG C2 C N N 20 8OG N2 N N N 21 8OG N3 N N N 22 8OG C4 C N N 23 8OG O8 O N N 24 8OG HOP3 H N N 25 8OG HOP2 H N N 26 8OG "H5'" H N N 27 8OG "H5''" H N N 28 8OG "H4'" H N N 29 8OG "H3'" H N N 30 8OG "HO3'" H N N 31 8OG "H2'" H N N 32 8OG "H2''" H N N 33 8OG "H1'" H N N 34 8OG H7 H N N 35 8OG H1 H N N 36 8OG H21 H N N 37 8OG H22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 DA OP3 O N N 126 DA P P N N 127 DA OP1 O N N 128 DA OP2 O N N 129 DA "O5'" O N N 130 DA "C5'" C N N 131 DA "C4'" C N R 132 DA "O4'" O N N 133 DA "C3'" C N S 134 DA "O3'" O N N 135 DA "C2'" C N N 136 DA "C1'" C N R 137 DA N9 N Y N 138 DA C8 C Y N 139 DA N7 N Y N 140 DA C5 C Y N 141 DA C6 C Y N 142 DA N6 N N N 143 DA N1 N Y N 144 DA C2 C Y N 145 DA N3 N Y N 146 DA C4 C Y N 147 DA HOP3 H N N 148 DA HOP2 H N N 149 DA "H5'" H N N 150 DA "H5''" H N N 151 DA "H4'" H N N 152 DA "H3'" H N N 153 DA "HO3'" H N N 154 DA "H2'" H N N 155 DA "H2''" H N N 156 DA "H1'" H N N 157 DA H8 H N N 158 DA H61 H N N 159 DA H62 H N N 160 DA H2 H N N 161 DC OP3 O N N 162 DC P P N N 163 DC OP1 O N N 164 DC OP2 O N N 165 DC "O5'" O N N 166 DC "C5'" C N N 167 DC "C4'" C N R 168 DC "O4'" O N N 169 DC "C3'" C N S 170 DC "O3'" O N N 171 DC "C2'" C N N 172 DC "C1'" C N R 173 DC N1 N N N 174 DC C2 C N N 175 DC O2 O N N 176 DC N3 N N N 177 DC C4 C N N 178 DC N4 N N N 179 DC C5 C N N 180 DC C6 C N N 181 DC HOP3 H N N 182 DC HOP2 H N N 183 DC "H5'" H N N 184 DC "H5''" H N N 185 DC "H4'" H N N 186 DC "H3'" H N N 187 DC "HO3'" H N N 188 DC "H2'" H N N 189 DC "H2''" H N N 190 DC "H1'" H N N 191 DC H41 H N N 192 DC H42 H N N 193 DC H5 H N N 194 DC H6 H N N 195 DG OP3 O N N 196 DG P P N N 197 DG OP1 O N N 198 DG OP2 O N N 199 DG "O5'" O N N 200 DG "C5'" C N N 201 DG "C4'" C N R 202 DG "O4'" O N N 203 DG "C3'" C N S 204 DG "O3'" O N N 205 DG "C2'" C N N 206 DG "C1'" C N R 207 DG N9 N Y N 208 DG C8 C Y N 209 DG N7 N Y N 210 DG C5 C Y N 211 DG C6 C N N 212 DG O6 O N N 213 DG N1 N N N 214 DG C2 C N N 215 DG N2 N N N 216 DG N3 N N N 217 DG C4 C Y N 218 DG HOP3 H N N 219 DG HOP2 H N N 220 DG "H5'" H N N 221 DG "H5''" H N N 222 DG "H4'" H N N 223 DG "H3'" H N N 224 DG "HO3'" H N N 225 DG "H2'" H N N 226 DG "H2''" H N N 227 DG "H1'" H N N 228 DG H8 H N N 229 DG H1 H N N 230 DG H21 H N N 231 DG H22 H N N 232 DT OP3 O N N 233 DT P P N N 234 DT OP1 O N N 235 DT OP2 O N N 236 DT "O5'" O N N 237 DT "C5'" C N N 238 DT "C4'" C N R 239 DT "O4'" O N N 240 DT "C3'" C N S 241 DT "O3'" O N N 242 DT "C2'" C N N 243 DT "C1'" C N R 244 DT N1 N N N 245 DT C2 C N N 246 DT O2 O N N 247 DT N3 N N N 248 DT C4 C N N 249 DT O4 O N N 250 DT C5 C N N 251 DT C7 C N N 252 DT C6 C N N 253 DT HOP3 H N N 254 DT HOP2 H N N 255 DT "H5'" H N N 256 DT "H5''" H N N 257 DT "H4'" H N N 258 DT "H3'" H N N 259 DT "HO3'" H N N 260 DT "H2'" H N N 261 DT "H2''" H N N 262 DT "H1'" H N N 263 DT H3 H N N 264 DT H71 H N N 265 DT H72 H N N 266 DT H73 H N N 267 DT H6 H N N 268 GLN N N N N 269 GLN CA C N S 270 GLN C C N N 271 GLN O O N N 272 GLN CB C N N 273 GLN CG C N N 274 GLN CD C N N 275 GLN OE1 O N N 276 GLN NE2 N N N 277 GLN OXT O N N 278 GLN H H N N 279 GLN H2 H N N 280 GLN HA H N N 281 GLN HB2 H N N 282 GLN HB3 H N N 283 GLN HG2 H N N 284 GLN HG3 H N N 285 GLN HE21 H N N 286 GLN HE22 H N N 287 GLN HXT H N N 288 GLU N N N N 289 GLU CA C N S 290 GLU C C N N 291 GLU O O N N 292 GLU CB C N N 293 GLU CG C N N 294 GLU CD C N N 295 GLU OE1 O N N 296 GLU OE2 O N N 297 GLU OXT O N N 298 GLU H H N N 299 GLU H2 H N N 300 GLU HA H N N 301 GLU HB2 H N N 302 GLU HB3 H N N 303 GLU HG2 H N N 304 GLU HG3 H N N 305 GLU HE2 H N N 306 GLU HXT H N N 307 GLY N N N N 308 GLY CA C N N 309 GLY C C N N 310 GLY O O N N 311 GLY OXT O N N 312 GLY H H N N 313 GLY H2 H N N 314 GLY HA2 H N N 315 GLY HA3 H N N 316 GLY HXT H N N 317 HIS N N N N 318 HIS CA C N S 319 HIS C C N N 320 HIS O O N N 321 HIS CB C N N 322 HIS CG C Y N 323 HIS ND1 N Y N 324 HIS CD2 C Y N 325 HIS CE1 C Y N 326 HIS NE2 N Y N 327 HIS OXT O N N 328 HIS H H N N 329 HIS H2 H N N 330 HIS HA H N N 331 HIS HB2 H N N 332 HIS HB3 H N N 333 HIS HD1 H N N 334 HIS HD2 H N N 335 HIS HE1 H N N 336 HIS HE2 H N N 337 HIS HXT H N N 338 ILE N N N N 339 ILE CA C N S 340 ILE C C N N 341 ILE O O N N 342 ILE CB C N S 343 ILE CG1 C N N 344 ILE CG2 C N N 345 ILE CD1 C N N 346 ILE OXT O N N 347 ILE H H N N 348 ILE H2 H N N 349 ILE HA H N N 350 ILE HB H N N 351 ILE HG12 H N N 352 ILE HG13 H N N 353 ILE HG21 H N N 354 ILE HG22 H N N 355 ILE HG23 H N N 356 ILE HD11 H N N 357 ILE HD12 H N N 358 ILE HD13 H N N 359 ILE HXT H N N 360 LEU N N N N 361 LEU CA C N S 362 LEU C C N N 363 LEU O O N N 364 LEU CB C N N 365 LEU CG C N N 366 LEU CD1 C N N 367 LEU CD2 C N N 368 LEU OXT O N N 369 LEU H H N N 370 LEU H2 H N N 371 LEU HA H N N 372 LEU HB2 H N N 373 LEU HB3 H N N 374 LEU HG H N N 375 LEU HD11 H N N 376 LEU HD12 H N N 377 LEU HD13 H N N 378 LEU HD21 H N N 379 LEU HD22 H N N 380 LEU HD23 H N N 381 LEU HXT H N N 382 LYS N N N N 383 LYS CA C N S 384 LYS C C N N 385 LYS O O N N 386 LYS CB C N N 387 LYS CG C N N 388 LYS CD C N N 389 LYS CE C N N 390 LYS NZ N N N 391 LYS OXT O N N 392 LYS H H N N 393 LYS H2 H N N 394 LYS HA H N N 395 LYS HB2 H N N 396 LYS HB3 H N N 397 LYS HG2 H N N 398 LYS HG3 H N N 399 LYS HD2 H N N 400 LYS HD3 H N N 401 LYS HE2 H N N 402 LYS HE3 H N N 403 LYS HZ1 H N N 404 LYS HZ2 H N N 405 LYS HZ3 H N N 406 LYS HXT H N N 407 MET N N N N 408 MET CA C N S 409 MET C C N N 410 MET O O N N 411 MET CB C N N 412 MET CG C N N 413 MET SD S N N 414 MET CE C N N 415 MET OXT O N N 416 MET H H N N 417 MET H2 H N N 418 MET HA H N N 419 MET HB2 H N N 420 MET HB3 H N N 421 MET HG2 H N N 422 MET HG3 H N N 423 MET HE1 H N N 424 MET HE2 H N N 425 MET HE3 H N N 426 MET HXT H N N 427 PHE N N N N 428 PHE CA C N S 429 PHE C C N N 430 PHE O O N N 431 PHE CB C N N 432 PHE CG C Y N 433 PHE CD1 C Y N 434 PHE CD2 C Y N 435 PHE CE1 C Y N 436 PHE CE2 C Y N 437 PHE CZ C Y N 438 PHE OXT O N N 439 PHE H H N N 440 PHE H2 H N N 441 PHE HA H N N 442 PHE HB2 H N N 443 PHE HB3 H N N 444 PHE HD1 H N N 445 PHE HD2 H N N 446 PHE HE1 H N N 447 PHE HE2 H N N 448 PHE HZ H N N 449 PHE HXT H N N 450 PRO N N N N 451 PRO CA C N S 452 PRO C C N N 453 PRO O O N N 454 PRO CB C N N 455 PRO CG C N N 456 PRO CD C N N 457 PRO OXT O N N 458 PRO H H N N 459 PRO HA H N N 460 PRO HB2 H N N 461 PRO HB3 H N N 462 PRO HG2 H N N 463 PRO HG3 H N N 464 PRO HD2 H N N 465 PRO HD3 H N N 466 PRO HXT H N N 467 SER N N N N 468 SER CA C N S 469 SER C C N N 470 SER O O N N 471 SER CB C N N 472 SER OG O N N 473 SER OXT O N N 474 SER H H N N 475 SER H2 H N N 476 SER HA H N N 477 SER HB2 H N N 478 SER HB3 H N N 479 SER HG H N N 480 SER HXT H N N 481 THR N N N N 482 THR CA C N S 483 THR C C N N 484 THR O O N N 485 THR CB C N R 486 THR OG1 O N N 487 THR CG2 C N N 488 THR OXT O N N 489 THR H H N N 490 THR H2 H N N 491 THR HA H N N 492 THR HB H N N 493 THR HG1 H N N 494 THR HG21 H N N 495 THR HG22 H N N 496 THR HG23 H N N 497 THR HXT H N N 498 TRP N N N N 499 TRP CA C N S 500 TRP C C N N 501 TRP O O N N 502 TRP CB C N N 503 TRP CG C Y N 504 TRP CD1 C Y N 505 TRP CD2 C Y N 506 TRP NE1 N Y N 507 TRP CE2 C Y N 508 TRP CE3 C Y N 509 TRP CZ2 C Y N 510 TRP CZ3 C Y N 511 TRP CH2 C Y N 512 TRP OXT O N N 513 TRP H H N N 514 TRP H2 H N N 515 TRP HA H N N 516 TRP HB2 H N N 517 TRP HB3 H N N 518 TRP HD1 H N N 519 TRP HE1 H N N 520 TRP HE3 H N N 521 TRP HZ2 H N N 522 TRP HZ3 H N N 523 TRP HH2 H N N 524 TRP HXT H N N 525 TYR N N N N 526 TYR CA C N S 527 TYR C C N N 528 TYR O O N N 529 TYR CB C N N 530 TYR CG C Y N 531 TYR CD1 C Y N 532 TYR CD2 C Y N 533 TYR CE1 C Y N 534 TYR CE2 C Y N 535 TYR CZ C Y N 536 TYR OH O N N 537 TYR OXT O N N 538 TYR H H N N 539 TYR H2 H N N 540 TYR HA H N N 541 TYR HB2 H N N 542 TYR HB3 H N N 543 TYR HD1 H N N 544 TYR HD2 H N N 545 TYR HE1 H N N 546 TYR HE2 H N N 547 TYR HH H N N 548 TYR HXT H N N 549 VAL N N N N 550 VAL CA C N S 551 VAL C C N N 552 VAL O O N N 553 VAL CB C N N 554 VAL CG1 C N N 555 VAL CG2 C N N 556 VAL OXT O N N 557 VAL H H N N 558 VAL H2 H N N 559 VAL HA H N N 560 VAL HB H N N 561 VAL HG11 H N N 562 VAL HG12 H N N 563 VAL HG13 H N N 564 VAL HG21 H N N 565 VAL HG22 H N N 566 VAL HG23 H N N 567 VAL HXT H N N 568 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 8OG OP3 P sing N N 1 8OG OP3 HOP3 sing N N 2 8OG P OP1 doub N N 3 8OG P OP2 sing N N 4 8OG P "O5'" sing N N 5 8OG OP2 HOP2 sing N N 6 8OG "O5'" "C5'" sing N N 7 8OG "C5'" "C4'" sing N N 8 8OG "C5'" "H5'" sing N N 9 8OG "C5'" "H5''" sing N N 10 8OG "C4'" "O4'" sing N N 11 8OG "C4'" "C3'" sing N N 12 8OG "C4'" "H4'" sing N N 13 8OG "O4'" "C1'" sing N N 14 8OG "C3'" "O3'" sing N N 15 8OG "C3'" "C2'" sing N N 16 8OG "C3'" "H3'" sing N N 17 8OG "O3'" "HO3'" sing N N 18 8OG "C2'" "C1'" sing N N 19 8OG "C2'" "H2'" sing N N 20 8OG "C2'" "H2''" sing N N 21 8OG "C1'" N9 sing N N 22 8OG "C1'" "H1'" sing N N 23 8OG N9 C8 sing N N 24 8OG N9 C4 sing N N 25 8OG C8 N7 sing N N 26 8OG C8 O8 doub N N 27 8OG N7 C5 sing N N 28 8OG N7 H7 sing N N 29 8OG C5 C6 sing N N 30 8OG C5 C4 doub N N 31 8OG C6 O6 doub N N 32 8OG C6 N1 sing N N 33 8OG N1 C2 sing N N 34 8OG N1 H1 sing N N 35 8OG C2 N2 sing N N 36 8OG C2 N3 doub N N 37 8OG N2 H21 sing N N 38 8OG N2 H22 sing N N 39 8OG N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 DA OP3 P sing N N 123 DA OP3 HOP3 sing N N 124 DA P OP1 doub N N 125 DA P OP2 sing N N 126 DA P "O5'" sing N N 127 DA OP2 HOP2 sing N N 128 DA "O5'" "C5'" sing N N 129 DA "C5'" "C4'" sing N N 130 DA "C5'" "H5'" sing N N 131 DA "C5'" "H5''" sing N N 132 DA "C4'" "O4'" sing N N 133 DA "C4'" "C3'" sing N N 134 DA "C4'" "H4'" sing N N 135 DA "O4'" "C1'" sing N N 136 DA "C3'" "O3'" sing N N 137 DA "C3'" "C2'" sing N N 138 DA "C3'" "H3'" sing N N 139 DA "O3'" "HO3'" sing N N 140 DA "C2'" "C1'" sing N N 141 DA "C2'" "H2'" sing N N 142 DA "C2'" "H2''" sing N N 143 DA "C1'" N9 sing N N 144 DA "C1'" "H1'" sing N N 145 DA N9 C8 sing Y N 146 DA N9 C4 sing Y N 147 DA C8 N7 doub Y N 148 DA C8 H8 sing N N 149 DA N7 C5 sing Y N 150 DA C5 C6 sing Y N 151 DA C5 C4 doub Y N 152 DA C6 N6 sing N N 153 DA C6 N1 doub Y N 154 DA N6 H61 sing N N 155 DA N6 H62 sing N N 156 DA N1 C2 sing Y N 157 DA C2 N3 doub Y N 158 DA C2 H2 sing N N 159 DA N3 C4 sing Y N 160 DC OP3 P sing N N 161 DC OP3 HOP3 sing N N 162 DC P OP1 doub N N 163 DC P OP2 sing N N 164 DC P "O5'" sing N N 165 DC OP2 HOP2 sing N N 166 DC "O5'" "C5'" sing N N 167 DC "C5'" "C4'" sing N N 168 DC "C5'" "H5'" sing N N 169 DC "C5'" "H5''" sing N N 170 DC "C4'" "O4'" sing N N 171 DC "C4'" "C3'" sing N N 172 DC "C4'" "H4'" sing N N 173 DC "O4'" "C1'" sing N N 174 DC "C3'" "O3'" sing N N 175 DC "C3'" "C2'" sing N N 176 DC "C3'" "H3'" sing N N 177 DC "O3'" "HO3'" sing N N 178 DC "C2'" "C1'" sing N N 179 DC "C2'" "H2'" sing N N 180 DC "C2'" "H2''" sing N N 181 DC "C1'" N1 sing N N 182 DC "C1'" "H1'" sing N N 183 DC N1 C2 sing N N 184 DC N1 C6 sing N N 185 DC C2 O2 doub N N 186 DC C2 N3 sing N N 187 DC N3 C4 doub N N 188 DC C4 N4 sing N N 189 DC C4 C5 sing N N 190 DC N4 H41 sing N N 191 DC N4 H42 sing N N 192 DC C5 C6 doub N N 193 DC C5 H5 sing N N 194 DC C6 H6 sing N N 195 DG OP3 P sing N N 196 DG OP3 HOP3 sing N N 197 DG P OP1 doub N N 198 DG P OP2 sing N N 199 DG P "O5'" sing N N 200 DG OP2 HOP2 sing N N 201 DG "O5'" "C5'" sing N N 202 DG "C5'" "C4'" sing N N 203 DG "C5'" "H5'" sing N N 204 DG "C5'" "H5''" sing N N 205 DG "C4'" "O4'" sing N N 206 DG "C4'" "C3'" sing N N 207 DG "C4'" "H4'" sing N N 208 DG "O4'" "C1'" sing N N 209 DG "C3'" "O3'" sing N N 210 DG "C3'" "C2'" sing N N 211 DG "C3'" "H3'" sing N N 212 DG "O3'" "HO3'" sing N N 213 DG "C2'" "C1'" sing N N 214 DG "C2'" "H2'" sing N N 215 DG "C2'" "H2''" sing N N 216 DG "C1'" N9 sing N N 217 DG "C1'" "H1'" sing N N 218 DG N9 C8 sing Y N 219 DG N9 C4 sing Y N 220 DG C8 N7 doub Y N 221 DG C8 H8 sing N N 222 DG N7 C5 sing Y N 223 DG C5 C6 sing N N 224 DG C5 C4 doub Y N 225 DG C6 O6 doub N N 226 DG C6 N1 sing N N 227 DG N1 C2 sing N N 228 DG N1 H1 sing N N 229 DG C2 N2 sing N N 230 DG C2 N3 doub N N 231 DG N2 H21 sing N N 232 DG N2 H22 sing N N 233 DG N3 C4 sing N N 234 DT OP3 P sing N N 235 DT OP3 HOP3 sing N N 236 DT P OP1 doub N N 237 DT P OP2 sing N N 238 DT P "O5'" sing N N 239 DT OP2 HOP2 sing N N 240 DT "O5'" "C5'" sing N N 241 DT "C5'" "C4'" sing N N 242 DT "C5'" "H5'" sing N N 243 DT "C5'" "H5''" sing N N 244 DT "C4'" "O4'" sing N N 245 DT "C4'" "C3'" sing N N 246 DT "C4'" "H4'" sing N N 247 DT "O4'" "C1'" sing N N 248 DT "C3'" "O3'" sing N N 249 DT "C3'" "C2'" sing N N 250 DT "C3'" "H3'" sing N N 251 DT "O3'" "HO3'" sing N N 252 DT "C2'" "C1'" sing N N 253 DT "C2'" "H2'" sing N N 254 DT "C2'" "H2''" sing N N 255 DT "C1'" N1 sing N N 256 DT "C1'" "H1'" sing N N 257 DT N1 C2 sing N N 258 DT N1 C6 sing N N 259 DT C2 O2 doub N N 260 DT C2 N3 sing N N 261 DT N3 C4 sing N N 262 DT N3 H3 sing N N 263 DT C4 O4 doub N N 264 DT C4 C5 sing N N 265 DT C5 C7 sing N N 266 DT C5 C6 doub N N 267 DT C7 H71 sing N N 268 DT C7 H72 sing N N 269 DT C7 H73 sing N N 270 DT C6 H6 sing N N 271 GLN N CA sing N N 272 GLN N H sing N N 273 GLN N H2 sing N N 274 GLN CA C sing N N 275 GLN CA CB sing N N 276 GLN CA HA sing N N 277 GLN C O doub N N 278 GLN C OXT sing N N 279 GLN CB CG sing N N 280 GLN CB HB2 sing N N 281 GLN CB HB3 sing N N 282 GLN CG CD sing N N 283 GLN CG HG2 sing N N 284 GLN CG HG3 sing N N 285 GLN CD OE1 doub N N 286 GLN CD NE2 sing N N 287 GLN NE2 HE21 sing N N 288 GLN NE2 HE22 sing N N 289 GLN OXT HXT sing N N 290 GLU N CA sing N N 291 GLU N H sing N N 292 GLU N H2 sing N N 293 GLU CA C sing N N 294 GLU CA CB sing N N 295 GLU CA HA sing N N 296 GLU C O doub N N 297 GLU C OXT sing N N 298 GLU CB CG sing N N 299 GLU CB HB2 sing N N 300 GLU CB HB3 sing N N 301 GLU CG CD sing N N 302 GLU CG HG2 sing N N 303 GLU CG HG3 sing N N 304 GLU CD OE1 doub N N 305 GLU CD OE2 sing N N 306 GLU OE2 HE2 sing N N 307 GLU OXT HXT sing N N 308 GLY N CA sing N N 309 GLY N H sing N N 310 GLY N H2 sing N N 311 GLY CA C sing N N 312 GLY CA HA2 sing N N 313 GLY CA HA3 sing N N 314 GLY C O doub N N 315 GLY C OXT sing N N 316 GLY OXT HXT sing N N 317 HIS N CA sing N N 318 HIS N H sing N N 319 HIS N H2 sing N N 320 HIS CA C sing N N 321 HIS CA CB sing N N 322 HIS CA HA sing N N 323 HIS C O doub N N 324 HIS C OXT sing N N 325 HIS CB CG sing N N 326 HIS CB HB2 sing N N 327 HIS CB HB3 sing N N 328 HIS CG ND1 sing Y N 329 HIS CG CD2 doub Y N 330 HIS ND1 CE1 doub Y N 331 HIS ND1 HD1 sing N N 332 HIS CD2 NE2 sing Y N 333 HIS CD2 HD2 sing N N 334 HIS CE1 NE2 sing Y N 335 HIS CE1 HE1 sing N N 336 HIS NE2 HE2 sing N N 337 HIS OXT HXT sing N N 338 ILE N CA sing N N 339 ILE N H sing N N 340 ILE N H2 sing N N 341 ILE CA C sing N N 342 ILE CA CB sing N N 343 ILE CA HA sing N N 344 ILE C O doub N N 345 ILE C OXT sing N N 346 ILE CB CG1 sing N N 347 ILE CB CG2 sing N N 348 ILE CB HB sing N N 349 ILE CG1 CD1 sing N N 350 ILE CG1 HG12 sing N N 351 ILE CG1 HG13 sing N N 352 ILE CG2 HG21 sing N N 353 ILE CG2 HG22 sing N N 354 ILE CG2 HG23 sing N N 355 ILE CD1 HD11 sing N N 356 ILE CD1 HD12 sing N N 357 ILE CD1 HD13 sing N N 358 ILE OXT HXT sing N N 359 LEU N CA sing N N 360 LEU N H sing N N 361 LEU N H2 sing N N 362 LEU CA C sing N N 363 LEU CA CB sing N N 364 LEU CA HA sing N N 365 LEU C O doub N N 366 LEU C OXT sing N N 367 LEU CB CG sing N N 368 LEU CB HB2 sing N N 369 LEU CB HB3 sing N N 370 LEU CG CD1 sing N N 371 LEU CG CD2 sing N N 372 LEU CG HG sing N N 373 LEU CD1 HD11 sing N N 374 LEU CD1 HD12 sing N N 375 LEU CD1 HD13 sing N N 376 LEU CD2 HD21 sing N N 377 LEU CD2 HD22 sing N N 378 LEU CD2 HD23 sing N N 379 LEU OXT HXT sing N N 380 LYS N CA sing N N 381 LYS N H sing N N 382 LYS N H2 sing N N 383 LYS CA C sing N N 384 LYS CA CB sing N N 385 LYS CA HA sing N N 386 LYS C O doub N N 387 LYS C OXT sing N N 388 LYS CB CG sing N N 389 LYS CB HB2 sing N N 390 LYS CB HB3 sing N N 391 LYS CG CD sing N N 392 LYS CG HG2 sing N N 393 LYS CG HG3 sing N N 394 LYS CD CE sing N N 395 LYS CD HD2 sing N N 396 LYS CD HD3 sing N N 397 LYS CE NZ sing N N 398 LYS CE HE2 sing N N 399 LYS CE HE3 sing N N 400 LYS NZ HZ1 sing N N 401 LYS NZ HZ2 sing N N 402 LYS NZ HZ3 sing N N 403 LYS OXT HXT sing N N 404 MET N CA sing N N 405 MET N H sing N N 406 MET N H2 sing N N 407 MET CA C sing N N 408 MET CA CB sing N N 409 MET CA HA sing N N 410 MET C O doub N N 411 MET C OXT sing N N 412 MET CB CG sing N N 413 MET CB HB2 sing N N 414 MET CB HB3 sing N N 415 MET CG SD sing N N 416 MET CG HG2 sing N N 417 MET CG HG3 sing N N 418 MET SD CE sing N N 419 MET CE HE1 sing N N 420 MET CE HE2 sing N N 421 MET CE HE3 sing N N 422 MET OXT HXT sing N N 423 PHE N CA sing N N 424 PHE N H sing N N 425 PHE N H2 sing N N 426 PHE CA C sing N N 427 PHE CA CB sing N N 428 PHE CA HA sing N N 429 PHE C O doub N N 430 PHE C OXT sing N N 431 PHE CB CG sing N N 432 PHE CB HB2 sing N N 433 PHE CB HB3 sing N N 434 PHE CG CD1 doub Y N 435 PHE CG CD2 sing Y N 436 PHE CD1 CE1 sing Y N 437 PHE CD1 HD1 sing N N 438 PHE CD2 CE2 doub Y N 439 PHE CD2 HD2 sing N N 440 PHE CE1 CZ doub Y N 441 PHE CE1 HE1 sing N N 442 PHE CE2 CZ sing Y N 443 PHE CE2 HE2 sing N N 444 PHE CZ HZ sing N N 445 PHE OXT HXT sing N N 446 PRO N CA sing N N 447 PRO N CD sing N N 448 PRO N H sing N N 449 PRO CA C sing N N 450 PRO CA CB sing N N 451 PRO CA HA sing N N 452 PRO C O doub N N 453 PRO C OXT sing N N 454 PRO CB CG sing N N 455 PRO CB HB2 sing N N 456 PRO CB HB3 sing N N 457 PRO CG CD sing N N 458 PRO CG HG2 sing N N 459 PRO CG HG3 sing N N 460 PRO CD HD2 sing N N 461 PRO CD HD3 sing N N 462 PRO OXT HXT sing N N 463 SER N CA sing N N 464 SER N H sing N N 465 SER N H2 sing N N 466 SER CA C sing N N 467 SER CA CB sing N N 468 SER CA HA sing N N 469 SER C O doub N N 470 SER C OXT sing N N 471 SER CB OG sing N N 472 SER CB HB2 sing N N 473 SER CB HB3 sing N N 474 SER OG HG sing N N 475 SER OXT HXT sing N N 476 THR N CA sing N N 477 THR N H sing N N 478 THR N H2 sing N N 479 THR CA C sing N N 480 THR CA CB sing N N 481 THR CA HA sing N N 482 THR C O doub N N 483 THR C OXT sing N N 484 THR CB OG1 sing N N 485 THR CB CG2 sing N N 486 THR CB HB sing N N 487 THR OG1 HG1 sing N N 488 THR CG2 HG21 sing N N 489 THR CG2 HG22 sing N N 490 THR CG2 HG23 sing N N 491 THR OXT HXT sing N N 492 TRP N CA sing N N 493 TRP N H sing N N 494 TRP N H2 sing N N 495 TRP CA C sing N N 496 TRP CA CB sing N N 497 TRP CA HA sing N N 498 TRP C O doub N N 499 TRP C OXT sing N N 500 TRP CB CG sing N N 501 TRP CB HB2 sing N N 502 TRP CB HB3 sing N N 503 TRP CG CD1 doub Y N 504 TRP CG CD2 sing Y N 505 TRP CD1 NE1 sing Y N 506 TRP CD1 HD1 sing N N 507 TRP CD2 CE2 doub Y N 508 TRP CD2 CE3 sing Y N 509 TRP NE1 CE2 sing Y N 510 TRP NE1 HE1 sing N N 511 TRP CE2 CZ2 sing Y N 512 TRP CE3 CZ3 doub Y N 513 TRP CE3 HE3 sing N N 514 TRP CZ2 CH2 doub Y N 515 TRP CZ2 HZ2 sing N N 516 TRP CZ3 CH2 sing Y N 517 TRP CZ3 HZ3 sing N N 518 TRP CH2 HH2 sing N N 519 TRP OXT HXT sing N N 520 TYR N CA sing N N 521 TYR N H sing N N 522 TYR N H2 sing N N 523 TYR CA C sing N N 524 TYR CA CB sing N N 525 TYR CA HA sing N N 526 TYR C O doub N N 527 TYR C OXT sing N N 528 TYR CB CG sing N N 529 TYR CB HB2 sing N N 530 TYR CB HB3 sing N N 531 TYR CG CD1 doub Y N 532 TYR CG CD2 sing Y N 533 TYR CD1 CE1 sing Y N 534 TYR CD1 HD1 sing N N 535 TYR CD2 CE2 doub Y N 536 TYR CD2 HD2 sing N N 537 TYR CE1 CZ doub Y N 538 TYR CE1 HE1 sing N N 539 TYR CE2 CZ sing Y N 540 TYR CE2 HE2 sing N N 541 TYR CZ OH sing N N 542 TYR OH HH sing N N 543 TYR OXT HXT sing N N 544 VAL N CA sing N N 545 VAL N H sing N N 546 VAL N H2 sing N N 547 VAL CA C sing N N 548 VAL CA CB sing N N 549 VAL CA HA sing N N 550 VAL C O doub N N 551 VAL C OXT sing N N 552 VAL CB CG1 sing N N 553 VAL CB CG2 sing N N 554 VAL CB HB sing N N 555 VAL CG1 HG11 sing N N 556 VAL CG1 HG12 sing N N 557 VAL CG1 HG13 sing N N 558 VAL CG2 HG21 sing N N 559 VAL CG2 HG22 sing N N 560 VAL CG2 HG23 sing N N 561 VAL OXT HXT sing N N 562 # _em_admin.current_status REL _em_admin.deposition_date 2024-02-03 _em_admin.deposition_site RCSB _em_admin.entry_id 8VX4 _em_admin.last_update 2024-10-09 _em_admin.map_release_date 2024-10-09 _em_admin.title 'Human OGG1 bound to a 35-bp DNA with an 8-oxoG in the middle' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 64 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ? ? OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? CLASSIFICATION ? 11 1 ? ? ? ? RECONSTRUCTION ? 12 1 ? ? ? ? 'MODEL REFINEMENT' ? 13 ? 1 ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8VX4 'double helix' 8VX4 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 3 1_555 B DC 33 1_555 -0.171 -0.291 0.925 -1.946 -1.351 0.253 1 C_DG3:DC33_B C 3 ? B 33 ? 19 1 1 A DC 4 1_555 B DG 32 1_555 0.238 -0.314 -0.947 -4.449 -5.501 4.751 2 C_DC4:DG32_B C 4 ? B 32 ? 19 1 1 A DC 5 1_555 B DG 31 1_555 1.427 -0.136 -1.643 1.574 -11.082 32.734 3 C_DC5:DG31_B C 5 ? B 31 ? ? 1 1 A DT 6 1_555 B DA 30 1_555 -0.106 -0.140 -0.243 -5.877 3.344 -0.957 4 C_DT6:DA30_B C 6 ? B 30 ? 20 1 1 A DC 7 1_555 B DG 29 1_555 0.188 -0.138 -0.051 -1.744 7.184 -1.156 5 C_DC7:DG29_B C 7 ? B 29 ? 19 1 1 A DG 8 1_555 B DC 28 1_555 -0.228 -0.176 0.260 -0.198 4.839 0.863 6 C_DG8:DC28_B C 8 ? B 28 ? 19 1 1 A DC 9 1_555 B DG 27 1_555 0.208 -0.157 0.192 2.634 4.168 1.538 7 C_DC9:DG27_B C 9 ? B 27 ? 19 1 1 A DA 10 1_555 B DT 26 1_555 0.085 -0.161 0.374 4.034 -3.588 1.538 8 C_DA10:DT26_B C 10 ? B 26 ? 20 1 1 A DG 11 1_555 B DC 25 1_555 -0.162 -0.135 0.257 3.673 -7.185 -0.346 9 C_DG11:DC25_B C 11 ? B 25 ? 19 1 1 A DA 12 1_555 B DT 24 1_555 0.113 -0.109 -0.031 -2.196 -8.273 0.234 10 C_DA12:DT24_B C 12 ? B 24 ? 20 1 1 A DA 13 1_555 B DT 23 1_555 0.122 -0.079 -0.366 -5.958 -11.820 0.296 11 C_DA13:DT23_B C 13 ? B 23 ? 20 1 1 A DT 14 1_555 B DA 22 1_555 -0.114 -0.193 -0.578 -5.747 -13.234 -0.492 12 C_DT14:DA22_B C 14 ? B 22 ? 20 1 1 A DC 15 1_555 B DG 21 1_555 0.198 -0.210 -0.647 -5.001 -5.253 3.223 13 C_DC15:DG21_B C 15 ? B 21 ? 19 1 1 A DC 16 1_555 B DG 20 1_555 0.187 -0.173 -0.565 -2.790 -1.549 1.740 14 C_DC16:DG20_B C 16 ? B 20 ? 19 1 1 A DC 17 1_555 B DG 19 1_555 0.178 -0.084 -0.119 1.256 -0.201 0.943 15 C_DC17:DG19_B C 17 ? B 19 ? 19 1 1 A DC 19 1_555 B DG 17 1_555 0.212 -0.133 0.267 -11.595 -11.068 1.091 16 C_DC19:DG17_B C 19 ? B 17 ? 19 1 1 A DT 20 1_555 B DA 16 1_555 -0.042 -0.213 -0.273 -11.095 -15.439 5.788 17 C_DT20:DA16_B C 20 ? B 16 ? 20 1 1 A DG 21 1_555 B DC 15 1_555 -0.180 -0.234 -1.018 -12.885 -2.817 0.748 18 C_DG21:DC15_B C 21 ? B 15 ? 19 1 1 A DC 22 1_555 B DG 14 1_555 0.207 -0.252 -0.805 -5.086 -1.211 2.273 19 C_DC22:DG14_B C 22 ? B 14 ? 19 1 1 A DC 23 1_555 B DG 13 1_555 0.250 -0.437 -0.530 -2.253 -8.435 0.674 20 C_DC23:DG13_B C 23 ? B 13 ? 19 1 1 A DG 24 1_555 B DC 12 1_555 -0.147 -0.193 -0.200 -6.039 0.729 -1.729 21 C_DG24:DC12_B C 24 ? B 12 ? 19 1 1 A DA 25 1_555 B DT 11 1_555 0.474 -0.153 -1.293 -20.908 -1.505 -6.086 22 C_DA25:DT11_B C 25 ? B 11 ? 20 1 1 A DG 26 1_555 B DC 10 1_555 -1.468 -0.286 -0.227 -13.486 -5.683 1.465 23 C_DG26:DC10_B C 26 ? B 10 ? 19 1 1 A DG 27 1_555 B DC 9 1_555 -0.189 -0.186 0.430 -3.022 -3.864 0.405 24 C_DG27:DC9_B C 27 ? B 9 ? 19 1 1 A DC 28 1_555 B DG 8 1_555 -0.016 -0.018 0.675 -7.942 2.798 4.460 25 C_DC28:DG8_B C 28 ? B 8 ? 19 1 1 A DC 29 1_555 B DG 7 1_555 0.279 -0.284 0.764 3.177 11.287 5.952 26 C_DC29:DG7_B C 29 ? B 7 ? 19 1 1 A DG 30 1_555 B DC 6 1_555 -0.548 -2.589 2.193 -23.730 16.267 72.646 27 C_DG30:DC6_B C 30 ? B 6 ? ? ? 1 A DC 31 1_555 B DG 5 1_555 -2.153 1.548 -2.105 15.448 3.909 71.129 28 C_DC31:DG5_B C 31 ? B 5 ? ? 1 1 A DT 32 1_555 B DA 4 1_555 -3.385 0.352 -1.076 19.666 -6.741 61.881 29 C_DT32:DA4_B C 32 ? B 4 ? ? 5 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 3 1_555 B DC 33 1_555 A DC 4 1_555 B DG 32 1_555 -0.035 2.709 3.747 8.946 -18.238 41.638 5.003 0.804 2.370 -24.018 -11.781 46.130 1 CC_DG3DC4:DG32DC33_BB C 3 ? B 33 ? C 4 ? B 32 ? 1 A DC 4 1_555 B DG 32 1_555 A DC 5 1_555 B DG 31 1_555 1.158 3.736 3.441 2.895 0.289 42.528 5.108 -1.283 3.532 0.398 -3.985 42.622 2 CC_DC4DC5:DG31DG32_BB C 4 ? B 32 ? C 5 ? B 31 ? 1 A DC 5 1_555 B DG 31 1_555 A DT 6 1_555 B DA 30 1_555 -2.464 0.952 3.911 -7.270 9.139 30.484 -0.411 2.713 4.461 16.634 13.232 32.595 3 CC_DC5DT6:DA30DG31_BB C 5 ? B 31 ? C 6 ? B 30 ? 1 A DT 6 1_555 B DA 30 1_555 A DC 7 1_555 B DG 29 1_555 0.901 -0.398 3.207 -0.643 6.857 33.017 -1.764 -1.655 3.048 11.904 1.117 33.708 4 CC_DT6DC7:DG29DA30_BB C 6 ? B 30 ? C 7 ? B 29 ? 1 A DC 7 1_555 B DG 29 1_555 A DG 8 1_555 B DC 28 1_555 1.152 -0.147 3.004 0.546 5.822 35.581 -0.996 -1.790 2.960 9.448 -0.886 36.043 5 CC_DC7DG8:DC28DG29_BB C 7 ? B 29 ? C 8 ? B 28 ? 1 A DG 8 1_555 B DC 28 1_555 A DC 9 1_555 B DG 27 1_555 0.847 -0.932 3.206 1.511 2.922 35.952 -1.907 -1.158 3.155 4.722 -2.442 36.097 6 CC_DG8DC9:DG27DC28_BB C 8 ? B 28 ? C 9 ? B 27 ? 1 A DC 9 1_555 B DG 27 1_555 A DA 10 1_555 B DT 26 1_555 -0.483 0.668 3.171 -0.507 2.918 35.317 0.678 0.721 3.221 4.799 0.834 35.437 7 CC_DC9DA10:DT26DG27_BB C 9 ? B 27 ? C 10 ? B 26 ? 1 A DA 10 1_555 B DT 26 1_555 A DG 11 1_555 B DC 25 1_555 -0.152 -0.832 3.209 -1.249 1.482 32.855 -1.716 0.060 3.173 2.617 2.205 32.911 8 CC_DA10DG11:DC25DT26_BB C 10 ? B 26 ? C 11 ? B 25 ? 1 A DG 11 1_555 B DC 25 1_555 A DA 12 1_555 B DT 24 1_555 -0.730 0.044 3.254 -0.304 -0.340 38.775 0.108 1.063 3.259 -0.512 0.459 38.777 9 CC_DG11DA12:DT24DC25_BB C 11 ? B 25 ? C 12 ? B 24 ? 1 A DA 12 1_555 B DT 24 1_555 A DA 13 1_555 B DT 23 1_555 -0.840 -0.324 3.329 -1.617 0.608 39.688 -0.549 1.044 3.354 0.895 2.380 39.725 10 CC_DA12DA13:DT23DT24_BB C 12 ? B 24 ? C 13 ? B 23 ? 1 A DA 13 1_555 B DT 23 1_555 A DT 14 1_555 B DA 22 1_555 0.058 -0.016 3.342 -2.235 -0.475 32.259 0.057 -0.508 3.330 -0.854 4.015 32.338 11 CC_DA13DT14:DA22DT23_BB C 13 ? B 23 ? C 14 ? B 22 ? 1 A DT 14 1_555 B DA 22 1_555 A DC 15 1_555 B DG 21 1_555 -0.150 0.170 3.223 -3.141 1.027 40.031 0.133 -0.135 3.229 1.496 4.579 40.162 12 CC_DT14DC15:DG21DA22_BB C 14 ? B 22 ? C 15 ? B 21 ? 1 A DC 15 1_555 B DG 21 1_555 A DC 16 1_555 B DG 20 1_555 0.349 -0.081 3.149 0.063 2.624 30.709 -0.645 -0.646 3.132 4.944 -0.118 30.818 13 CC_DC15DC16:DG20DG21_BB C 15 ? B 21 ? C 16 ? B 20 ? 1 A DC 16 1_555 B DG 20 1_555 A DC 17 1_555 B DG 19 1_555 0.589 0.975 3.681 -1.726 2.324 34.274 1.239 -1.300 3.704 3.936 2.922 34.392 14 CC_DC16DC17:DG19DG20_BB C 16 ? B 20 ? C 17 ? B 19 ? 1 A DC 19 1_555 B DG 17 1_555 A DT 20 1_555 B DA 16 1_555 -0.913 2.054 3.090 3.692 -1.488 43.788 2.874 1.543 2.940 -1.991 -4.938 43.960 15 CC_DC19DT20:DA16DG17_BB C 19 ? B 17 ? C 20 ? B 16 ? 1 A DT 20 1_555 B DA 16 1_555 A DG 21 1_555 B DC 15 1_555 -0.427 1.732 3.511 -3.217 5.641 41.905 1.757 0.227 3.724 7.831 4.466 42.383 16 CC_DT20DG21:DC15DA16_BB C 20 ? B 16 ? C 21 ? B 15 ? 1 A DG 21 1_555 B DC 15 1_555 A DC 22 1_555 B DG 14 1_555 0.155 0.469 3.019 -1.729 4.053 28.801 0.107 -0.659 3.040 8.089 3.450 29.129 17 CC_DG21DC22:DG14DC15_BB C 21 ? B 15 ? C 22 ? B 14 ? 1 A DC 22 1_555 B DG 14 1_555 A DC 23 1_555 B DG 13 1_555 0.393 0.099 3.195 -2.066 8.273 37.639 -0.850 -0.845 3.121 12.625 3.153 38.559 18 CC_DC22DC23:DG13DG14_BB C 22 ? B 14 ? C 23 ? B 13 ? 1 A DC 23 1_555 B DG 13 1_555 A DG 24 1_555 B DC 12 1_555 -0.181 -0.524 3.206 -5.698 18.871 37.628 -2.571 -0.306 2.663 27.105 8.183 42.312 19 CC_DC23DG24:DC12DG13_BB C 23 ? B 13 ? C 24 ? B 12 ? 1 A DG 24 1_555 B DC 12 1_555 A DA 25 1_555 B DT 11 1_555 -0.027 -1.353 3.673 8.861 13.341 39.284 -3.326 1.002 3.007 18.917 -12.565 42.304 20 CC_DG24DA25:DT11DC12_BB C 24 ? B 12 ? C 25 ? B 11 ? 1 A DA 25 1_555 B DT 11 1_555 A DG 26 1_555 B DC 10 1_555 -0.527 1.012 3.209 -14.584 4.700 24.581 0.925 -2.365 3.161 9.904 30.733 28.903 21 CC_DA25DG26:DC10DT11_BB C 25 ? B 11 ? C 26 ? B 10 ? 1 A DG 26 1_555 B DC 10 1_555 A DG 27 1_555 B DC 9 1_555 -0.252 -0.027 3.031 -8.894 3.471 43.403 -0.337 -0.437 3.013 4.626 11.856 44.392 22 CC_DG26DG27:DC9DC10_BB C 26 ? B 10 ? C 27 ? B 9 ? 1 A DG 27 1_555 B DC 9 1_555 A DC 28 1_555 B DG 8 1_555 1.230 0.163 3.575 0.196 -4.079 41.371 0.702 -1.710 3.549 -5.757 -0.276 41.563 23 CC_DG27DC28:DG8DC9_BB C 27 ? B 9 ? C 28 ? B 8 ? 1 A DC 28 1_555 B DG 8 1_555 A DC 29 1_555 B DG 7 1_555 0.440 -0.468 3.253 -2.849 3.788 29.579 -1.671 -1.429 3.115 7.359 5.535 29.948 24 CC_DC28DC29:DG7DG8_BB C 28 ? B 8 ? C 29 ? B 7 ? 1 A DC 29 1_555 B DG 7 1_555 A DG 30 1_555 B DC 6 1_555 2.092 -4.428 -0.078 -158.365 16.768 103.861 -2.197 -0.764 -1.616 8.613 81.344 167.249 25 CC_DC29DG30:DC6DG7_BB C 29 ? B 7 ? C 30 ? B 6 ? 1 A DG 30 1_555 B DC 6 1_555 A DC 31 1_555 B DG 5 1_555 2.638 2.560 0.015 -143.124 75.950 -62.190 -1.423 1.084 0.972 -39.998 -75.376 -164.627 26 CC_DG30DC31:DG5DC6_BB C 30 ? B 6 ? C 31 ? B 5 ? 1 A DC 31 1_555 B DG 5 1_555 A DT 32 1_555 B DA 4 1_555 0.697 1.821 3.011 -2.085 2.742 25.936 3.322 -2.073 3.119 6.076 4.618 26.160 27 CC_DC31DT32:DA4DG5_BB C 31 ? B 5 ? C 32 ? B 4 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' ES011858 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' GM131754 2 # _atom_sites.entry_id 8VX4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_