HEADER IMMUNE SYSTEM 07-FEB-24 8VY6 TITLE MURINE LIGHT CHAIN DIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6A8 LIGHT CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-22B (+) KEYWDS ANTIBODY, LIGHT CHAIN, DIMER, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.B.KAPINGIDZA,C.DOLAMORE,N.P.HYDUKE,W.EASLY,C.CHIVV,A.POMES, AUTHOR 2 M.CHRUSZCZ REVDAT 3 23-OCT-24 8VY6 1 REMARK REVDAT 2 10-JUL-24 8VY6 1 JRNL REVDAT 1 03-JUL-24 8VY6 0 JRNL AUTH R.H.ARRIAZA,A.B.KAPINGIDZA,C.DOLAMORE,K.KHATRI,A.O'MALLEY, JRNL AUTH 2 J.GLESNER,S.WUENSCHMANN,N.P.HYDUKE,W.EASLEY,C.CHHIV,A.POMES, JRNL AUTH 3 M.CHRUSZCZ JRNL TITL STRUCTURAL, BIOPHYSICAL, AND COMPUTATIONAL STUDIES OF A JRNL TITL 2 MURINE LIGHT CHAIN DIMER. JRNL REF MOLECULES V. 29 2024 JRNL REFN ESSN 1420-3049 JRNL PMID 38930950 JRNL DOI 10.3390/MOLECULES29122885 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 12424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 611 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 876 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3238 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 21 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.87000 REMARK 3 B22 (A**2) : -2.76000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.386 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3338 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2879 ; 0.037 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4545 ; 1.304 ; 1.640 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6720 ; 2.449 ; 1.573 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 422 ; 7.975 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 157 ;30.053 ;22.611 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 532 ;14.895 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.448 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3734 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 692 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1694 ; 1.070 ; 4.880 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1693 ; 1.068 ; 4.879 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2113 ; 1.852 ; 7.316 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2114 ; 1.852 ; 7.318 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1644 ; 1.182 ; 5.126 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1617 ; 1.120 ; 5.004 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2390 ; 1.861 ; 7.450 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3385 ; 4.908 ;54.731 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3386 ; 4.907 ;54.732 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 6137 0.11 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5710 -8.2550 5.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.2684 T22: 0.1179 REMARK 3 T33: 0.1057 T12: -0.0754 REMARK 3 T13: -0.0754 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 13.5929 L22: 1.0032 REMARK 3 L33: 6.7461 L12: -2.2061 REMARK 3 L13: -7.7982 L23: 2.2724 REMARK 3 S TENSOR REMARK 3 S11: -0.3611 S12: -0.1080 S13: -0.5117 REMARK 3 S21: -0.1508 S22: 0.0412 S23: 0.1749 REMARK 3 S31: 0.1242 S32: -0.1787 S33: 0.3199 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9650 -3.8880 12.1650 REMARK 3 T TENSOR REMARK 3 T11: 0.2051 T22: 0.0876 REMARK 3 T33: 0.0901 T12: -0.0357 REMARK 3 T13: 0.0067 T23: 0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.5027 L22: 3.9434 REMARK 3 L33: 0.9810 L12: -0.9596 REMARK 3 L13: -0.1641 L23: -0.3934 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: -0.3077 S13: -0.1456 REMARK 3 S21: 0.1226 S22: 0.1130 S23: 0.0425 REMARK 3 S31: 0.2312 S32: 0.0811 S33: -0.0598 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 13.7440 22.7550 4.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.1238 T22: 0.1469 REMARK 3 T33: 0.1928 T12: -0.0074 REMARK 3 T13: -0.0271 T23: -0.0925 REMARK 3 L TENSOR REMARK 3 L11: 7.0099 L22: 15.0403 REMARK 3 L33: 2.4945 L12: 7.8700 REMARK 3 L13: -1.8455 L23: -1.7495 REMARK 3 S TENSOR REMARK 3 S11: 0.2298 S12: -0.2989 S13: 0.3713 REMARK 3 S21: 0.6556 S22: 0.0036 S23: -0.3380 REMARK 3 S31: 0.0302 S32: 0.5439 S33: -0.2335 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 212 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5860 25.3050 -0.2700 REMARK 3 T TENSOR REMARK 3 T11: 0.0990 T22: 0.0117 REMARK 3 T33: 0.1983 T12: -0.0048 REMARK 3 T13: 0.0014 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.8215 L22: 4.6236 REMARK 3 L33: 2.8341 L12: 1.1495 REMARK 3 L13: -0.9802 L23: 0.4378 REMARK 3 S TENSOR REMARK 3 S11: -0.0715 S12: 0.0357 S13: 0.5140 REMARK 3 S21: -0.3272 S22: 0.1853 S23: -0.2191 REMARK 3 S31: -0.3452 S32: 0.0162 S33: -0.1137 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 19 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1570 7.8120 21.3360 REMARK 3 T TENSOR REMARK 3 T11: 0.2552 T22: 0.3056 REMARK 3 T33: 0.4165 T12: -0.0483 REMARK 3 T13: -0.0495 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 2.7724 L22: 13.5526 REMARK 3 L33: 8.7449 L12: 2.7234 REMARK 3 L13: -3.6641 L23: -4.5683 REMARK 3 S TENSOR REMARK 3 S11: 0.2676 S12: -0.5644 S13: 0.6289 REMARK 3 S21: 0.8039 S22: -0.1539 S23: 0.5722 REMARK 3 S31: -0.3006 S32: 0.6052 S33: -0.1137 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 20 B 60 REMARK 3 ORIGIN FOR THE GROUP (A): 39.8740 -0.4240 15.0910 REMARK 3 T TENSOR REMARK 3 T11: 0.1943 T22: 0.0809 REMARK 3 T33: 0.0245 T12: 0.0318 REMARK 3 T13: 0.0085 T23: 0.0360 REMARK 3 L TENSOR REMARK 3 L11: 2.5606 L22: 3.4479 REMARK 3 L33: 2.4608 L12: 1.4804 REMARK 3 L13: 1.5091 L23: -1.1275 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.1904 S13: -0.0055 REMARK 3 S21: -0.0444 S22: -0.1668 S23: -0.2265 REMARK 3 S31: -0.0241 S32: 0.3427 S33: 0.1778 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 61 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 39.6270 4.4080 16.2970 REMARK 3 T TENSOR REMARK 3 T11: 0.0649 T22: 0.0928 REMARK 3 T33: 0.0414 T12: -0.0029 REMARK 3 T13: -0.0087 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.3100 L22: 6.7514 REMARK 3 L33: 2.8945 L12: 1.0908 REMARK 3 L13: 0.3038 L23: -1.8974 REMARK 3 S TENSOR REMARK 3 S11: -0.2135 S12: 0.0071 S13: 0.2902 REMARK 3 S21: -0.1347 S22: 0.0864 S23: -0.2087 REMARK 3 S31: 0.0339 S32: 0.2636 S33: 0.1272 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 212 REMARK 3 ORIGIN FOR THE GROUP (A): 13.5300 27.9920 19.9110 REMARK 3 T TENSOR REMARK 3 T11: 0.3690 T22: 0.2745 REMARK 3 T33: 0.3051 T12: -0.1782 REMARK 3 T13: 0.0272 T23: -0.0878 REMARK 3 L TENSOR REMARK 3 L11: 8.3214 L22: 2.3828 REMARK 3 L33: 3.0430 L12: -0.8140 REMARK 3 L13: 0.8113 L23: -0.4901 REMARK 3 S TENSOR REMARK 3 S11: 0.4305 S12: -0.6229 S13: -0.3035 REMARK 3 S21: 0.2970 S22: -0.3296 S23: 0.3327 REMARK 3 S31: -0.0286 S32: -0.5760 S33: -0.1010 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8VY6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281303. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 17.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62700 REMARK 200 R SYM FOR SHELL (I) : 0.62700 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE CRYSTALS WERE OBTAINED WHEN A 5 REMARK 280 MG/ML PROTEIN SAMPLE WAS MIXED IN A 1:1 VOLUME RATIO WITH A WELL REMARK 280 SOLUTION COMPOSED OF 0.2 M AMMONIUM SULFATE, 0.1 M BIS-TRIS PH REMARK 280 5.5, AND 25% W/V POLYETHYLENE GLYCOL 3,350., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y+1/2,-Z REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 61.83950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.32400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 61.83950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.32400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 61.83950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.32400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 61.83950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.32400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS B 213 REMARK 465 HIS B 214 REMARK 465 HIS B 215 REMARK 465 HIS B 216 REMARK 465 HIS B 217 REMARK 465 HIS B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 184 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 GLU B 124 CG CD OE1 OE2 REMARK 470 LYS B 150 CG CD CE NZ REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 LYS B 184 CG CD CE NZ REMARK 470 GLU B 188 CG CD OE1 OE2 REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 52 -56.56 78.16 REMARK 500 THR B 52 -56.36 77.46 REMARK 500 ASN B 191 -51.85 -123.58 REMARK 500 ASN B 211 -168.97 -124.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 8VY6 A 1 220 PDB 8VY6 8VY6 1 220 DBREF 8VY6 B 1 220 PDB 8VY6 8VY6 1 220 SEQRES 1 A 220 MET GLN ILE VAL LEU THR GLN SER PRO SER SER LEU SER SEQRES 2 A 220 ALA SER LEU GLY GLU ARG VAL SER LEU THR CYS ARG ALA SEQRES 3 A 220 SER GLN ASP ILE GLY SER SER LEU ASN TRP LEU GLN GLN SEQRES 4 A 220 GLU PRO ASP GLY THR ILE LYS ARG LEU ILE TYR ALA THR SEQRES 5 A 220 SER SER LEU ASP SER GLY VAL PRO LYS ARG PHE SER GLY SEQRES 6 A 220 SER ARG SER GLY SER ASP TYR SER LEU THR ILE SER SER SEQRES 7 A 220 LEU GLU SER GLU ASP PHE VAL ASP TYR TYR CYS LEU GLN SEQRES 8 A 220 TYR ALA SER SER PRO TRP THR PHE GLY GLY GLY THR LYS SEQRES 9 A 220 LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 A 220 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 A 220 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 A 220 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 A 220 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 A 220 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 A 220 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 A 220 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 A 220 SER PHE ASN ARG HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 220 MET GLN ILE VAL LEU THR GLN SER PRO SER SER LEU SER SEQRES 2 B 220 ALA SER LEU GLY GLU ARG VAL SER LEU THR CYS ARG ALA SEQRES 3 B 220 SER GLN ASP ILE GLY SER SER LEU ASN TRP LEU GLN GLN SEQRES 4 B 220 GLU PRO ASP GLY THR ILE LYS ARG LEU ILE TYR ALA THR SEQRES 5 B 220 SER SER LEU ASP SER GLY VAL PRO LYS ARG PHE SER GLY SEQRES 6 B 220 SER ARG SER GLY SER ASP TYR SER LEU THR ILE SER SER SEQRES 7 B 220 LEU GLU SER GLU ASP PHE VAL ASP TYR TYR CYS LEU GLN SEQRES 8 B 220 TYR ALA SER SER PRO TRP THR PHE GLY GLY GLY THR LYS SEQRES 9 B 220 LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 B 220 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 B 220 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 B 220 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 B 220 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 B 220 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 B 220 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 B 220 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 B 220 SER PHE ASN ARG HIS HIS HIS HIS HIS HIS HIS HIS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 B 301 5 HET SO4 B 302 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 7(O4 S 2-) FORMUL 10 HOH *21(H2 O) HELIX 1 AA1 GLU A 80 PHE A 84 5 5 HELIX 2 AA2 SER A 122 SER A 128 1 7 HELIX 3 AA3 THR A 183 HIS A 190 1 8 HELIX 4 AA4 GLU B 80 PHE B 84 5 5 HELIX 5 AA5 SER B 122 SER B 128 1 7 HELIX 6 AA6 LYS B 184 HIS B 190 1 7 SHEET 1 AA1 4 LEU A 5 SER A 8 0 SHEET 2 AA1 4 VAL A 20 ALA A 26 -1 O ARG A 25 N THR A 6 SHEET 3 AA1 4 ASP A 71 ILE A 76 -1 O LEU A 74 N LEU A 22 SHEET 4 AA1 4 PHE A 63 SER A 68 -1 N SER A 68 O ASP A 71 SHEET 1 AA2 6 SER A 11 ALA A 14 0 SHEET 2 AA2 6 THR A 103 ILE A 107 1 O LYS A 104 N LEU A 12 SHEET 3 AA2 6 ASP A 86 GLN A 91 -1 N TYR A 87 O THR A 103 SHEET 4 AA2 6 LEU A 34 GLN A 39 -1 N LEU A 37 O TYR A 88 SHEET 5 AA2 6 ILE A 45 TYR A 50 -1 O ILE A 49 N TRP A 36 SHEET 6 AA2 6 SER A 54 LEU A 55 -1 O SER A 54 N TYR A 50 SHEET 1 AA3 4 SER A 11 ALA A 14 0 SHEET 2 AA3 4 THR A 103 ILE A 107 1 O LYS A 104 N LEU A 12 SHEET 3 AA3 4 ASP A 86 GLN A 91 -1 N TYR A 87 O THR A 103 SHEET 4 AA3 4 THR A 98 PHE A 99 -1 O THR A 98 N GLN A 91 SHEET 1 AA4 4 THR A 115 PHE A 119 0 SHEET 2 AA4 4 ALA A 131 PHE A 140 -1 O PHE A 136 N SER A 117 SHEET 3 AA4 4 TYR A 174 LEU A 182 -1 O LEU A 180 N VAL A 133 SHEET 4 AA4 4 VAL A 160 TRP A 164 -1 N LEU A 161 O THR A 179 SHEET 1 AA5 4 SER A 154 ARG A 156 0 SHEET 2 AA5 4 ASN A 146 ILE A 151 -1 N ILE A 151 O SER A 154 SHEET 3 AA5 4 TYR A 193 THR A 198 -1 O THR A 194 N LYS A 150 SHEET 4 AA5 4 ILE A 206 PHE A 210 -1 O ILE A 206 N ALA A 197 SHEET 1 AA6 4 LEU B 5 SER B 8 0 SHEET 2 AA6 4 VAL B 20 ALA B 26 -1 O THR B 23 N SER B 8 SHEET 3 AA6 4 ASP B 71 ILE B 76 -1 O LEU B 74 N LEU B 22 SHEET 4 AA6 4 PHE B 63 SER B 68 -1 N SER B 68 O ASP B 71 SHEET 1 AA7 6 SER B 11 ALA B 14 0 SHEET 2 AA7 6 THR B 103 ILE B 107 1 O GLU B 106 N LEU B 12 SHEET 3 AA7 6 ASP B 86 GLN B 91 -1 N TYR B 87 O THR B 103 SHEET 4 AA7 6 LEU B 34 GLN B 39 -1 N LEU B 37 O TYR B 88 SHEET 5 AA7 6 ILE B 45 TYR B 50 -1 O ILE B 49 N TRP B 36 SHEET 6 AA7 6 SER B 54 LEU B 55 -1 O SER B 54 N TYR B 50 SHEET 1 AA8 4 SER B 11 ALA B 14 0 SHEET 2 AA8 4 THR B 103 ILE B 107 1 O GLU B 106 N LEU B 12 SHEET 3 AA8 4 ASP B 86 GLN B 91 -1 N TYR B 87 O THR B 103 SHEET 4 AA8 4 THR B 98 PHE B 99 -1 O THR B 98 N GLN B 91 SHEET 1 AA9 4 THR B 115 PHE B 119 0 SHEET 2 AA9 4 GLY B 130 PHE B 140 -1 O PHE B 136 N SER B 117 SHEET 3 AA9 4 TYR B 174 THR B 183 -1 O LEU B 180 N VAL B 133 SHEET 4 AA9 4 VAL B 160 TRP B 164 -1 N LEU B 161 O THR B 179 SHEET 1 AB1 4 SER B 154 ARG B 156 0 SHEET 2 AB1 4 ASN B 146 ILE B 151 -1 N ILE B 151 O SER B 154 SHEET 3 AB1 4 TYR B 193 THR B 198 -1 O THR B 194 N LYS B 150 SHEET 4 AB1 4 ILE B 206 PHE B 210 -1 O ILE B 206 N ALA B 197 SSBOND 1 CYS A 24 CYS A 89 1555 1555 2.03 SSBOND 2 CYS A 135 CYS A 195 1555 1555 2.03 SSBOND 3 CYS B 24 CYS B 89 1555 1555 2.04 SSBOND 4 CYS B 135 CYS B 195 1555 1555 2.04 CISPEP 1 SER A 8 PRO A 9 0 -14.41 CISPEP 2 SER A 95 PRO A 96 0 -2.58 CISPEP 3 TYR A 141 PRO A 142 0 -3.19 CISPEP 4 SER B 8 PRO B 9 0 -13.61 CISPEP 5 SER B 95 PRO B 96 0 -2.61 CISPEP 6 TYR B 141 PRO B 142 0 -2.85 CRYST1 123.679 132.648 65.361 90.00 90.00 90.00 C 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008085 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007539 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015300 0.00000