HEADER RNA BINDING PROTEIN 08-FEB-24 8VYD TITLE A NOVEL SYNTHASE GENERATES M4(2)C TO STABILIZE THE ARCHAEAL RIBOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: SAM-DEPENDENT METHYLTRANSFERASE, UPF0020 FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_TAXID: 311400; SOURCE 4 GENE: TK2045; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS N4, N4-DIMETHYLCYTIDINE, SYNTHASE, RNA MODIFICATIONS, KEYWDS 2 HYPERTHERMOPHILE, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.S.HO,T.J.SANTANGELO,K.FLUKE REVDAT 1 06-NOV-24 8VYD 0 JRNL AUTH K.FLUKE,N.DAI,R.T.FUCHS,P.S.HO,H.P.FEBVRE,V.TALBOTT, JRNL AUTH 2 E.J.WOLF,Y.-L.TSAI,L.ELKINS,J.SCHILTZ,R.CZARNY,B.ROBB, JRNL AUTH 3 I.R.CORREA JR,T.J.SANTANGELO JRNL TITL A NOVEL SYNTHASE GENERATES M4(2)C TO STABILIZE THE ARCHAEAL JRNL TITL 2 RIBOSOME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 39015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5400 - 4.3400 1.00 4084 182 0.1689 0.2052 REMARK 3 2 4.3400 - 3.4400 0.95 3808 161 0.1909 0.2340 REMARK 3 3 3.4400 - 3.0100 0.98 3970 164 0.2374 0.3169 REMARK 3 4 3.0100 - 2.7300 1.00 3995 170 0.2600 0.2736 REMARK 3 5 2.7300 - 2.5400 0.85 3422 143 0.3299 0.4407 REMARK 3 6 2.5400 - 2.3900 1.00 4003 174 0.2677 0.2926 REMARK 3 7 2.3900 - 2.2700 0.84 3379 143 0.2687 0.2886 REMARK 3 8 2.2700 - 2.1700 0.84 3385 142 0.4250 0.5295 REMARK 3 9 2.1700 - 2.0900 0.71 2831 115 0.3396 0.3997 REMARK 3 10 2.0900 - 2.0200 0.77 2790 124 0.5131 0.5942 REMARK 3 11 2.0000 - 1.9500 0.59 1750 80 0.3550 0.3074 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.384 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 40.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4384 REMARK 3 ANGLE : 1.126 5923 REMARK 3 CHIRALITY : 0.059 657 REMARK 3 PLANARITY : 0.011 775 REMARK 3 DIHEDRAL : 6.770 608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 2:99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.355 12.566 34.461 REMARK 3 T TENSOR REMARK 3 T11: 0.6280 T22: 0.2630 REMARK 3 T33: 0.2980 T12: -0.0286 REMARK 3 T13: 0.0732 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 4.3550 L22: 3.5720 REMARK 3 L33: 6.9754 L12: 0.9086 REMARK 3 L13: 0.4568 L23: 0.9421 REMARK 3 S TENSOR REMARK 3 S11: 0.2186 S12: -0.2673 S13: 0.5162 REMARK 3 S21: 0.5398 S22: -0.0581 S23: -0.1655 REMARK 3 S31: -0.8818 S32: 0.1728 S33: -0.0774 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 100:123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.116 -6.114 19.871 REMARK 3 T TENSOR REMARK 3 T11: 0.4776 T22: 0.4683 REMARK 3 T33: 0.3809 T12: 0.0419 REMARK 3 T13: 0.0402 T23: -0.1299 REMARK 3 L TENSOR REMARK 3 L11: 7.7016 L22: 5.9228 REMARK 3 L33: 1.1541 L12: -6.0159 REMARK 3 L13: -2.7546 L23: 1.6982 REMARK 3 S TENSOR REMARK 3 S11: -0.3694 S12: -1.1258 S13: 0.0215 REMARK 3 S21: 1.3354 S22: 0.1355 S23: 0.5863 REMARK 3 S31: 0.0228 S32: -0.5633 S33: 0.4992 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 124:248 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.452 1.287 7.751 REMARK 3 T TENSOR REMARK 3 T11: 0.1037 T22: 0.3128 REMARK 3 T33: 0.1925 T12: 0.0304 REMARK 3 T13: 0.0270 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 3.0132 L22: 3.0887 REMARK 3 L33: 3.9487 L12: 0.8023 REMARK 3 L13: 0.6066 L23: 1.2628 REMARK 3 S TENSOR REMARK 3 S11: -0.1244 S12: 0.6332 S13: 0.0591 REMARK 3 S21: -0.0110 S22: 0.1124 S23: 0.1589 REMARK 3 S31: -0.2506 S32: 0.0289 S33: -0.0022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN A AND RESID 249:282 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.743 -14.511 5.083 REMARK 3 T TENSOR REMARK 3 T11: 0.2231 T22: 0.3191 REMARK 3 T33: 0.5014 T12: -0.0443 REMARK 3 T13: 0.0645 T23: -0.1947 REMARK 3 L TENSOR REMARK 3 L11: 4.5527 L22: 5.7113 REMARK 3 L33: 7.2038 L12: -1.1613 REMARK 3 L13: 0.7643 L23: 0.3345 REMARK 3 S TENSOR REMARK 3 S11: -0.0953 S12: 0.6848 S13: -1.4131 REMARK 3 S21: 0.4073 S22: -0.0584 S23: 0.4103 REMARK 3 S31: 0.0719 S32: -0.5396 S33: 0.2600 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 2:61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.358 16.441 82.090 REMARK 3 T TENSOR REMARK 3 T11: 0.2508 T22: 0.2339 REMARK 3 T33: 0.2410 T12: 0.0495 REMARK 3 T13: 0.0449 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 6.4993 L22: 6.6516 REMARK 3 L33: 8.2945 L12: 2.4016 REMARK 3 L13: -0.0204 L23: -1.2273 REMARK 3 S TENSOR REMARK 3 S11: 0.1147 S12: -0.0492 S13: 0.5141 REMARK 3 S21: 0.0408 S22: -0.1450 S23: -0.2688 REMARK 3 S31: -0.3984 S32: 0.4512 S33: -0.0122 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: ( CHAIN B AND RESID 62:111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.424 6.583 71.564 REMARK 3 T TENSOR REMARK 3 T11: 0.3444 T22: 0.4222 REMARK 3 T33: 0.2630 T12: -0.0311 REMARK 3 T13: 0.0826 T23: -0.0456 REMARK 3 L TENSOR REMARK 3 L11: 2.5318 L22: 4.4436 REMARK 3 L33: 7.0881 L12: 1.2170 REMARK 3 L13: -1.0380 L23: 2.6244 REMARK 3 S TENSOR REMARK 3 S11: -0.1151 S12: -0.1219 S13: 0.0047 REMARK 3 S21: 0.2093 S22: -0.4057 S23: 0.5120 REMARK 3 S31: 0.8665 S32: -0.6189 S33: 0.4311 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: ( CHAIN B AND RESID 112:281 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.087 -5.615 51.945 REMARK 3 T TENSOR REMARK 3 T11: 0.4506 T22: 0.3003 REMARK 3 T33: 0.2270 T12: 0.0985 REMARK 3 T13: 0.0038 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 2.4227 L22: 4.3409 REMARK 3 L33: 4.6313 L12: -0.7557 REMARK 3 L13: -0.0615 L23: 1.7626 REMARK 3 S TENSOR REMARK 3 S11: 0.0949 S12: -0.0493 S13: -0.3733 REMARK 3 S21: 0.1421 S22: 0.0242 S23: 0.0864 REMARK 3 S31: 0.7841 S32: 0.4082 S33: -0.1177 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VYD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 9.2 - 9.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44882 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.18910 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 40.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, TRIS-HCL, NACL, DTT, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.64000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 104 REMARK 465 HIS A 105 REMARK 465 ARG A 106 REMARK 465 THR A 107 REMARK 465 LYS A 108 REMARK 465 GLU A 109 REMARK 465 ASN A 240 REMARK 465 PRO A 241 REMARK 465 GLY A 242 REMARK 465 LYS A 243 REMARK 465 LYS A 244 REMARK 465 TYR A 245 REMARK 465 ARG A 246 REMARK 465 ARG A 247 REMARK 465 GLY A 283 REMARK 465 VAL A 284 REMARK 465 LYS A 285 REMARK 465 ALA A 286 REMARK 465 SER A 287 REMARK 465 GLN A 288 REMARK 465 ARG A 289 REMARK 465 ASP A 290 REMARK 465 MET B 1 REMARK 465 ALA B 103 REMARK 465 MET B 104 REMARK 465 HIS B 105 REMARK 465 ARG B 106 REMARK 465 THR B 107 REMARK 465 LYS B 108 REMARK 465 GLU B 109 REMARK 465 GLY B 239 REMARK 465 ASN B 240 REMARK 465 PRO B 241 REMARK 465 GLY B 242 REMARK 465 LYS B 243 REMARK 465 LYS B 244 REMARK 465 TYR B 245 REMARK 465 ARG B 246 REMARK 465 ARG B 247 REMARK 465 LYS B 248 REMARK 465 LYS B 282 REMARK 465 GLY B 283 REMARK 465 VAL B 284 REMARK 465 LYS B 285 REMARK 465 ALA B 286 REMARK 465 SER B 287 REMARK 465 GLN B 288 REMARK 465 ARG B 289 REMARK 465 ASP B 290 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 29 18.94 59.89 REMARK 500 ASN A 32 -20.70 68.93 REMARK 500 PRO A 47 2.31 -69.01 REMARK 500 ASN A 72 -136.38 53.58 REMARK 500 GLU A 83 -98.49 64.16 REMARK 500 PRO A 91 49.76 -77.01 REMARK 500 ASN A 100 -66.45 57.74 REMARK 500 ASN A 100 -66.45 53.36 REMARK 500 ASN A 111 -73.67 -104.36 REMARK 500 ASN A 111 -73.19 -104.69 REMARK 500 PRO A 112 -70.09 -68.60 REMARK 500 PRO A 112 -70.09 -68.34 REMARK 500 LYS A 179 -35.94 121.10 REMARK 500 PRO A 207 172.38 -59.52 REMARK 500 ALA A 212 48.03 -147.66 REMARK 500 VAL A 238 -46.77 -130.97 REMARK 500 LYS A 252 -79.11 -29.99 REMARK 500 PRO A 280 -155.68 -80.08 REMARK 500 ASN B 32 -11.51 68.05 REMARK 500 SER B 84 30.41 -86.98 REMARK 500 PRO B 91 34.84 -74.40 REMARK 500 MET B 124 87.06 23.17 REMARK 500 PRO B 207 -179.19 -62.50 REMARK 500 ALA B 212 101.10 -172.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 508 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A 509 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 510 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 511 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 512 DISTANCE = 6.66 ANGSTROMS REMARK 525 HOH A 513 DISTANCE = 7.30 ANGSTROMS REMARK 525 HOH B 369 DISTANCE = 6.18 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 306 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 129 OE2 REMARK 620 2 HOH A 438 O 121.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 133 OD1 REMARK 620 2 CYS A 135 O 108.6 REMARK 620 3 CYS A 135 O 108.0 1.0 REMARK 620 4 HOH A 412 O 133.9 109.1 109.2 REMARK 620 5 HOH A 453 O 87.8 87.1 88.0 119.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 136 O REMARK 620 2 HOH A 439 O 58.1 REMARK 620 3 HOH A 474 O 82.5 126.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 140 O REMARK 620 2 HOH A 404 O 113.3 REMARK 620 3 HOH A 445 O 135.6 105.3 REMARK 620 N 1 2 DBREF 8VYD A 1 290 UNP Q5JDR0 Q5JDR0_THEKO 1 290 DBREF 8VYD B 1 290 UNP Q5JDR0 Q5JDR0_THEKO 1 290 SEQADV 8VYD ALA A 103 UNP Q5JDR0 ARG 103 CONFLICT SEQADV 8VYD ALA B 103 UNP Q5JDR0 ARG 103 CONFLICT SEQRES 1 A 290 MET GLU GLU ILE TYR TYR ILE THR PHE ARG GLU ALA ARG SEQRES 2 A 290 MET LEU LEU ALA SER ARG GLY ASN VAL LYS LEU ASN LEU SEQRES 3 A 290 ASP LEU ARG LYS THR ASN ARG VAL GLN GLU VAL GLU ILE SEQRES 4 A 290 LYS ASP GLU GLY ALA VAL PHE PRO ASP GLY THR LEU VAL SEQRES 5 A 290 GLU ARG GLU VAL LEU GLU LYS ILE ALA ARG ASP ASP GLY SEQRES 6 A 290 THR VAL TYR PHE VAL SER ASN GLY GLY VAL TYR LYS ALA SEQRES 7 A 290 ALA ILE ALA GLY GLU SER GLY PHE TYR LYS LEU VAL PRO SEQRES 8 A 290 THR ILE PRO PRO THR ILE GLU ILE ASN GLY ILE ALA MET SEQRES 9 A 290 HIS ARG THR LYS GLU MET ASN PRO LEU GLN ASP THR ARG SEQRES 10 A 290 ASN LYS VAL ASN THR VAL MET PRO ARG GLU GLY GLU THR SEQRES 11 A 290 VAL LEU ASP THR CYS MET GLY LEU GLY TYR THR ALA ILE SEQRES 12 A 290 GLU ALA SER LYS ARG GLY ALA TYR VAL ILE THR ILE GLU SEQRES 13 A 290 LYS ASP PRO ASN VAL ILE GLU ILE ALA ARG ILE ASN PRO SEQRES 14 A 290 TRP SER ARG GLU LEU PHE THR GLY GLY LYS ILE GLN VAL SEQRES 15 A 290 ILE GLN GLY ASP ALA PHE GLU VAL VAL LYS LYS PHE LYS SEQRES 16 A 290 GLN ALA SER PHE ASP VAL ILE ILE HIS ASP PRO PRO ARG SEQRES 17 A 290 PHE SER LEU ALA GLY HIS LEU TYR SER GLU GLU PHE TYR SEQRES 18 A 290 ARG GLU LEU PHE ARG ILE LEU LYS PRO GLY GLY ARG LEU SEQRES 19 A 290 PHE HIS TYR VAL GLY ASN PRO GLY LYS LYS TYR ARG ARG SEQRES 20 A 290 LYS ASP LEU GLN LYS GLY VAL MET GLU ARG LEU ARG ARG SEQRES 21 A 290 VAL GLY PHE VAL GLY VAL ARG ARG VAL GLU GLU ALA LEU SEQRES 22 A 290 GLY VAL VAL ALA ARG LYS PRO GLU LYS GLY VAL LYS ALA SEQRES 23 A 290 SER GLN ARG ASP SEQRES 1 B 290 MET GLU GLU ILE TYR TYR ILE THR PHE ARG GLU ALA ARG SEQRES 2 B 290 MET LEU LEU ALA SER ARG GLY ASN VAL LYS LEU ASN LEU SEQRES 3 B 290 ASP LEU ARG LYS THR ASN ARG VAL GLN GLU VAL GLU ILE SEQRES 4 B 290 LYS ASP GLU GLY ALA VAL PHE PRO ASP GLY THR LEU VAL SEQRES 5 B 290 GLU ARG GLU VAL LEU GLU LYS ILE ALA ARG ASP ASP GLY SEQRES 6 B 290 THR VAL TYR PHE VAL SER ASN GLY GLY VAL TYR LYS ALA SEQRES 7 B 290 ALA ILE ALA GLY GLU SER GLY PHE TYR LYS LEU VAL PRO SEQRES 8 B 290 THR ILE PRO PRO THR ILE GLU ILE ASN GLY ILE ALA MET SEQRES 9 B 290 HIS ARG THR LYS GLU MET ASN PRO LEU GLN ASP THR ARG SEQRES 10 B 290 ASN LYS VAL ASN THR VAL MET PRO ARG GLU GLY GLU THR SEQRES 11 B 290 VAL LEU ASP THR CYS MET GLY LEU GLY TYR THR ALA ILE SEQRES 12 B 290 GLU ALA SER LYS ARG GLY ALA TYR VAL ILE THR ILE GLU SEQRES 13 B 290 LYS ASP PRO ASN VAL ILE GLU ILE ALA ARG ILE ASN PRO SEQRES 14 B 290 TRP SER ARG GLU LEU PHE THR GLY GLY LYS ILE GLN VAL SEQRES 15 B 290 ILE GLN GLY ASP ALA PHE GLU VAL VAL LYS LYS PHE LYS SEQRES 16 B 290 GLN ALA SER PHE ASP VAL ILE ILE HIS ASP PRO PRO ARG SEQRES 17 B 290 PHE SER LEU ALA GLY HIS LEU TYR SER GLU GLU PHE TYR SEQRES 18 B 290 ARG GLU LEU PHE ARG ILE LEU LYS PRO GLY GLY ARG LEU SEQRES 19 B 290 PHE HIS TYR VAL GLY ASN PRO GLY LYS LYS TYR ARG ARG SEQRES 20 B 290 LYS ASP LEU GLN LYS GLY VAL MET GLU ARG LEU ARG ARG SEQRES 21 B 290 VAL GLY PHE VAL GLY VAL ARG ARG VAL GLU GLU ALA LEU SEQRES 22 B 290 GLY VAL VAL ALA ARG LYS PRO GLU LYS GLY VAL LYS ALA SEQRES 23 B 290 SER GLN ARG ASP HET NA A 301 1 HET NA A 302 1 HET NA A 303 1 HET NA A 304 1 HET NA A 305 1 HET NA A 306 1 HETNAM NA SODIUM ION FORMUL 3 NA 6(NA 1+) FORMUL 9 HOH *182(H2 O) HELIX 1 AA1 THR A 8 SER A 18 1 11 HELIX 2 AA2 ARG A 54 ASP A 63 1 10 HELIX 3 AA3 ASN A 111 MET A 124 1 14 HELIX 4 AA4 GLY A 139 LYS A 147 1 9 HELIX 5 AA5 ASP A 158 ASN A 168 1 11 HELIX 6 AA6 PRO A 169 PHE A 175 5 7 HELIX 7 AA7 ASP A 186 VAL A 191 1 6 HELIX 8 AA8 LYS A 192 PHE A 194 5 3 HELIX 9 AA9 ARG A 208 TYR A 216 5 9 HELIX 10 AB1 SER A 217 ILE A 227 1 11 HELIX 11 AB2 ASP A 249 GLY A 262 1 14 HELIX 12 AB3 THR B 8 SER B 18 1 11 HELIX 13 AB4 ARG B 54 ARG B 62 1 9 HELIX 14 AB5 ASN B 111 THR B 122 1 12 HELIX 15 AB6 GLY B 139 ARG B 148 1 10 HELIX 16 AB7 ASP B 158 ASN B 168 1 11 HELIX 17 AB8 PRO B 169 PHE B 175 5 7 HELIX 18 AB9 ASP B 186 PHE B 194 1 9 HELIX 19 AC1 ALA B 212 TYR B 216 5 5 HELIX 20 AC2 SER B 217 ILE B 227 1 11 HELIX 21 AC3 LYS B 252 VAL B 261 1 10 SHEET 1 AA1 3 TYR A 5 ILE A 7 0 SHEET 2 AA1 3 TYR A 68 SER A 71 -1 O TYR A 68 N ILE A 7 SHEET 3 AA1 3 GLY A 74 LYS A 77 -1 O TYR A 76 N PHE A 69 SHEET 1 AA2 4 ASN A 21 ASN A 25 0 SHEET 2 AA2 4 VAL A 34 ILE A 39 -1 O GLN A 35 N LEU A 24 SHEET 3 AA2 4 GLY A 43 VAL A 45 -1 O VAL A 45 N GLU A 38 SHEET 4 AA2 4 LEU A 51 GLU A 53 -1 O VAL A 52 N ALA A 44 SHEET 1 AA3 3 ALA A 79 GLY A 82 0 SHEET 2 AA3 3 GLY A 85 VAL A 90 -1 O TYR A 87 N ILE A 80 SHEET 3 AA3 3 THR A 96 ILE A 99 -1 O THR A 96 N VAL A 90 SHEET 1 AA4 7 ILE A 180 GLN A 184 0 SHEET 2 AA4 7 TYR A 151 GLU A 156 1 N THR A 154 O ILE A 183 SHEET 3 AA4 7 THR A 130 ASP A 133 1 N ASP A 133 O ILE A 153 SHEET 4 AA4 7 PHE A 199 HIS A 204 1 O ILE A 203 N LEU A 132 SHEET 5 AA4 7 LEU A 228 TYR A 237 1 O PHE A 235 N HIS A 204 SHEET 6 AA4 7 GLY A 274 ARG A 278 -1 O VAL A 275 N HIS A 236 SHEET 7 AA4 7 VAL A 264 VAL A 269 -1 N VAL A 264 O ARG A 278 SHEET 1 AA5 3 TYR B 5 ILE B 7 0 SHEET 2 AA5 3 TYR B 68 SER B 71 -1 O VAL B 70 N TYR B 5 SHEET 3 AA5 3 GLY B 74 LYS B 77 -1 O TYR B 76 N PHE B 69 SHEET 1 AA6 4 GLY B 20 ASN B 25 0 SHEET 2 AA6 4 VAL B 34 ILE B 39 -1 O ILE B 39 N GLY B 20 SHEET 3 AA6 4 GLY B 43 VAL B 45 -1 O VAL B 45 N GLU B 38 SHEET 4 AA6 4 LEU B 51 GLU B 53 -1 O VAL B 52 N ALA B 44 SHEET 1 AA7 3 ALA B 79 GLY B 82 0 SHEET 2 AA7 3 GLY B 85 VAL B 90 -1 O TYR B 87 N ILE B 80 SHEET 3 AA7 3 THR B 96 ILE B 99 -1 O THR B 96 N VAL B 90 SHEET 1 AA8 7 ILE B 180 GLN B 184 0 SHEET 2 AA8 7 TYR B 151 GLU B 156 1 N VAL B 152 O GLN B 181 SHEET 3 AA8 7 THR B 130 ASP B 133 1 N ASP B 133 O ILE B 153 SHEET 4 AA8 7 PHE B 199 HIS B 204 1 O ILE B 203 N LEU B 132 SHEET 5 AA8 7 LEU B 228 TYR B 237 1 O PHE B 235 N HIS B 204 SHEET 6 AA8 7 GLY B 274 ARG B 278 -1 O VAL B 275 N HIS B 236 SHEET 7 AA8 7 VAL B 264 VAL B 269 -1 N VAL B 269 O GLY B 274 LINK OE2 GLU A 129 NA NA A 306 1555 1555 2.85 LINK OD1 ASP A 133 NA NA A 301 1555 1555 2.26 LINK O ACYS A 135 NA NA A 301 1555 1555 2.83 LINK O BCYS A 135 NA NA A 301 1555 1555 2.81 LINK O MET A 136 NA NA A 303 1555 1555 2.98 LINK O TYR A 140 NA NA A 302 1555 1555 2.96 LINK OD1 ASP A 186 NA NA A 304 1555 1555 2.31 LINK NA NA A 301 O HOH A 412 1555 1555 2.53 LINK NA NA A 301 O HOH A 453 1555 1555 2.28 LINK NA NA A 302 O HOH A 404 1555 1555 2.68 LINK NA NA A 302 O HOH A 445 1555 1555 2.79 LINK NA NA A 303 O HOH A 439 1555 1555 2.77 LINK NA NA A 303 O HOH A 474 1555 1555 2.36 LINK NA NA A 305 O HOH A 462 1555 1555 2.34 LINK NA NA A 306 O HOH A 438 1555 1555 2.34 CISPEP 1 ILE A 93 PRO A 94 0 -3.31 CISPEP 2 ILE B 93 PRO B 94 0 3.98 CRYST1 37.670 97.280 89.020 90.00 99.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026546 0.000000 0.004510 0.00000 SCALE2 0.000000 0.010280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011394 0.00000