HEADER OXYGEN TRANSPORT 08-FEB-24 8VYL TITLE THE STRUCTURE OF HUMAN HEMOGLOBIN IN COMPLEX WITH NANOBODY BTNBE11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMOGLOBIN SUBUNIT ALPHA; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: ALPHA-GLOBIN,HEMOGLOBIN ALPHA CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMOGLOBIN SUBUNIT BETA; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: BETA-GLOBIN,HEMOGLOBIN BETA CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: NANOBODY BTNBE11; COMPND 11 CHAIN: F, E; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 7 ORGANISM_COMMON: HUMAN; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 11 ORGANISM_TAXID: 562; SOURCE 12 EXPRESSION_SYSTEM: LAMA GLAMA; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9844 KEYWDS HEMOGLOBIN, NANOBODY, OXYGEN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR R.GRINTER,S.BINKS,D.FOX REVDAT 1 17-JUL-24 8VYL 0 JRNL AUTH D.R.FOX,I.SAMUELS,S.BINKS,R.GRINTER JRNL TITL THE STRUCTURE OF A HAEMOGLOBIN-NANOBODY COMPLEX REVEALS JRNL TITL 2 HUMAN BETA-SUBUNIT-SPECIFIC INTERACTIONS. JRNL REF FEBS LETT. 2024 JRNL REFN ISSN 0014-5793 JRNL PMID 38880764 JRNL DOI 10.1002/1873-3468.14958 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 52415 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.150 REMARK 3 FREE R VALUE TEST SET COUNT : 2698 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.8900 - 5.4000 1.00 2699 160 0.1689 0.1988 REMARK 3 2 5.4000 - 4.2900 1.00 2683 117 0.1772 0.2334 REMARK 3 3 4.2900 - 3.7500 1.00 2654 129 0.1745 0.2542 REMARK 3 4 3.7400 - 3.4000 1.00 2638 129 0.1910 0.2364 REMARK 3 5 3.4000 - 3.1600 1.00 2653 145 0.2221 0.2764 REMARK 3 6 3.1600 - 2.9700 1.00 2593 171 0.2246 0.2849 REMARK 3 7 2.9700 - 2.8200 1.00 2617 157 0.2231 0.2535 REMARK 3 8 2.8200 - 2.7000 1.00 2610 153 0.2293 0.3214 REMARK 3 9 2.7000 - 2.6000 1.00 2646 123 0.2420 0.3292 REMARK 3 10 2.6000 - 2.5100 1.00 2585 141 0.2408 0.2704 REMARK 3 11 2.5100 - 2.4300 1.00 2633 144 0.2288 0.3046 REMARK 3 12 2.4300 - 2.3600 1.00 2576 144 0.2259 0.2969 REMARK 3 13 2.3600 - 2.3000 1.00 2658 136 0.2325 0.2857 REMARK 3 14 2.3000 - 2.2400 1.00 2624 138 0.2285 0.2806 REMARK 3 15 2.2400 - 2.1900 1.00 2596 130 0.2358 0.3049 REMARK 3 16 2.1900 - 2.1400 1.00 2562 163 0.2428 0.2812 REMARK 3 17 2.1400 - 2.1000 1.00 2668 130 0.2632 0.3322 REMARK 3 18 2.1000 - 2.0600 1.00 2589 150 0.2717 0.3358 REMARK 3 19 2.0600 - 2.0200 0.93 2433 138 0.2810 0.3285 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6583 REMARK 3 ANGLE : 0.723 9004 REMARK 3 CHIRALITY : 0.042 975 REMARK 3 PLANARITY : 0.006 1137 REMARK 3 DIHEDRAL : 10.684 895 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -25.7926 -24.4751 3.8418 REMARK 3 T TENSOR REMARK 3 T11: 0.2069 T22: 0.2319 REMARK 3 T33: 0.2748 T12: 0.0275 REMARK 3 T13: 0.0053 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.8071 L22: 0.8304 REMARK 3 L33: 0.4821 L12: -0.3495 REMARK 3 L13: -0.0163 L23: -0.1927 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: 0.1371 S13: 0.3128 REMARK 3 S21: -0.0977 S22: -0.0808 S23: -0.2481 REMARK 3 S31: -0.0704 S32: 0.0260 S33: 0.0242 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VYL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000280379. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : YES REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52426 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 49.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.26500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.20.1_4487: ???) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: FLAT PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1-0.3M NH4 ACET. PH 5.5, 0.1-0.3M NA REMARK 280 ACET., 25% W/V PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.38050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.41850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.38050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.41850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D, F, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 138 REMARK 465 LYS A 139 REMARK 465 TYR A 140 REMARK 465 ARG A 141 REMARK 465 MET C 0 REMARK 465 ARG C 141 REMARK 465 MET B 0 REMARK 465 VAL B 1 REMARK 465 MET D 0 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 465 ALA F 3 REMARK 465 GLN F 4 REMARK 465 GLY F 130 REMARK 465 GLY F 131 REMARK 465 SER F 132 REMARK 465 LEU F 133 REMARK 465 GLU F 134 REMARK 465 HIS F 135 REMARK 465 HIS F 136 REMARK 465 HIS F 137 REMARK 465 HIS F 138 REMARK 465 HIS F 139 REMARK 465 HIS F 140 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 GLY E 130 REMARK 465 GLY E 131 REMARK 465 SER E 132 REMARK 465 LEU E 133 REMARK 465 GLU E 134 REMARK 465 HIS E 135 REMARK 465 HIS E 136 REMARK 465 HIS E 137 REMARK 465 HIS E 138 REMARK 465 HIS E 139 REMARK 465 HIS E 140 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 348 O HOH C 364 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU F 49 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 51.05 -146.90 REMARK 500 PHE A 117 53.43 -94.85 REMARK 500 ASP C 75 49.55 -143.78 REMARK 500 PHE C 117 50.15 -99.21 REMARK 500 LEU D 3 -159.97 -117.33 REMARK 500 GLU D 6 -8.11 76.15 REMARK 500 GLU D 7 -60.68 -107.65 REMARK 500 GLU F 49 118.25 -161.29 REMARK 500 SER F 91 66.29 -62.24 REMARK 500 ALA F 95 167.58 178.93 REMARK 500 ALA F 108 -35.53 62.53 REMARK 500 SER F 128 55.19 -104.73 REMARK 500 ALA E 95 170.91 179.57 REMARK 500 SER E 128 52.41 -105.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG F 48 GLU F 49 -145.36 REMARK 500 SER F 74 THR F 75 139.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 401 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH D 340 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH E 307 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH E 308 DISTANCE = 6.52 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 87 NE2 REMARK 620 2 HEM A 201 NA 84.0 REMARK 620 3 HEM A 201 NB 90.4 90.0 REMARK 620 4 HEM A 201 NC 97.2 177.9 91.7 REMARK 620 5 HEM A 201 ND 92.4 89.2 177.0 89.1 REMARK 620 6 HOH A 307 O 177.8 94.3 88.3 84.6 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 87 NE2 REMARK 620 2 HEM C 201 NA 88.7 REMARK 620 3 HEM C 201 NB 88.8 90.1 REMARK 620 4 HEM C 201 NC 90.8 178.8 91.0 REMARK 620 5 HEM C 201 ND 91.7 89.4 179.3 89.5 REMARK 620 6 HOH C 304 O 174.4 96.8 90.3 83.6 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 92 NE2 REMARK 620 2 HEM B 201 NA 86.7 REMARK 620 3 HEM B 201 NB 91.1 88.4 REMARK 620 4 HEM B 201 NC 94.4 177.8 89.7 REMARK 620 5 HEM B 201 ND 91.8 88.7 175.7 93.2 REMARK 620 6 HOH B 336 O 178.6 94.6 88.6 84.3 88.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 92 NE2 REMARK 620 2 HEM D 201 NA 81.7 REMARK 620 3 HEM D 201 NB 84.0 87.7 REMARK 620 4 HEM D 201 NC 97.5 176.9 89.2 REMARK 620 5 HEM D 201 ND 94.2 90.7 177.8 92.3 REMARK 620 6 HOH D 324 O 169.5 89.4 90.1 91.1 91.4 REMARK 620 N 1 2 3 4 5 DBREF 8VYL A 0 141 UNP P69905 HBA_HUMAN 1 142 DBREF 8VYL C 0 141 UNP P69905 HBA_HUMAN 1 142 DBREF 8VYL B 0 146 UNP P68871 HBB_HUMAN 1 147 DBREF 8VYL D 0 146 UNP P68871 HBB_HUMAN 1 147 DBREF 8VYL F 1 140 PDB 8VYL 8VYL 1 140 DBREF 8VYL E 1 140 PDB 8VYL 8VYL 1 140 SEQRES 1 A 142 MET VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA SEQRES 2 A 142 ALA TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY SEQRES 3 A 142 ALA GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR SEQRES 4 A 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SEQRES 5 A 142 SER ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP SEQRES 6 A 142 ALA LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO SEQRES 7 A 142 ASN ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS SEQRES 8 A 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SEQRES 9 A 142 CYS LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU SEQRES 10 A 142 PHE THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 A 142 ALA SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 C 142 MET VAL LEU SER PRO ALA ASP LYS THR ASN VAL LYS ALA SEQRES 2 C 142 ALA TRP GLY LYS VAL GLY ALA HIS ALA GLY GLU TYR GLY SEQRES 3 C 142 ALA GLU ALA LEU GLU ARG MET PHE LEU SER PHE PRO THR SEQRES 4 C 142 THR LYS THR TYR PHE PRO HIS PHE ASP LEU SER HIS GLY SEQRES 5 C 142 SER ALA GLN VAL LYS GLY HIS GLY LYS LYS VAL ALA ASP SEQRES 6 C 142 ALA LEU THR ASN ALA VAL ALA HIS VAL ASP ASP MET PRO SEQRES 7 C 142 ASN ALA LEU SER ALA LEU SER ASP LEU HIS ALA HIS LYS SEQRES 8 C 142 LEU ARG VAL ASP PRO VAL ASN PHE LYS LEU LEU SER HIS SEQRES 9 C 142 CYS LEU LEU VAL THR LEU ALA ALA HIS LEU PRO ALA GLU SEQRES 10 C 142 PHE THR PRO ALA VAL HIS ALA SER LEU ASP LYS PHE LEU SEQRES 11 C 142 ALA SER VAL SER THR VAL LEU THR SER LYS TYR ARG SEQRES 1 B 147 MET VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR SEQRES 2 B 147 ALA LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY SEQRES 3 B 147 GLU ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR SEQRES 4 B 147 GLN ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO SEQRES 5 B 147 ASP ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY SEQRES 6 B 147 LYS LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS SEQRES 7 B 147 LEU ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU SEQRES 8 B 147 LEU HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE SEQRES 9 B 147 ARG LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS SEQRES 10 B 147 HIS PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA SEQRES 11 B 147 TYR GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA SEQRES 12 B 147 HIS LYS TYR HIS SEQRES 1 D 147 MET VAL HIS LEU THR PRO GLU GLU LYS SER ALA VAL THR SEQRES 2 D 147 ALA LEU TRP GLY LYS VAL ASN VAL ASP GLU VAL GLY GLY SEQRES 3 D 147 GLU ALA LEU GLY ARG LEU LEU VAL VAL TYR PRO TRP THR SEQRES 4 D 147 GLN ARG PHE PHE GLU SER PHE GLY ASP LEU SER THR PRO SEQRES 5 D 147 ASP ALA VAL MET GLY ASN PRO LYS VAL LYS ALA HIS GLY SEQRES 6 D 147 LYS LYS VAL LEU GLY ALA PHE SER ASP GLY LEU ALA HIS SEQRES 7 D 147 LEU ASP ASN LEU LYS GLY THR PHE ALA THR LEU SER GLU SEQRES 8 D 147 LEU HIS CYS ASP LYS LEU HIS VAL ASP PRO GLU ASN PHE SEQRES 9 D 147 ARG LEU LEU GLY ASN VAL LEU VAL CYS VAL LEU ALA HIS SEQRES 10 D 147 HIS PHE GLY LYS GLU PHE THR PRO PRO VAL GLN ALA ALA SEQRES 11 D 147 TYR GLN LYS VAL VAL ALA GLY VAL ALA ASN ALA LEU ALA SEQRES 12 D 147 HIS LYS TYR HIS SEQRES 1 F 140 MET GLY ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SEQRES 2 F 140 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 F 140 ALA SER GLY PHE ILE PHE SER THR TYR SER MET GLY TRP SEQRES 4 F 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 F 140 ALA SER THR TRP GLY GLY VAL THR THR ASN TYR ALA ASP SEQRES 6 F 140 SER VAL LYS GLY ARG PHE THR ILE SER THR ASP ASN ALA SEQRES 7 F 140 LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU ASN SER SEQRES 8 F 140 GLY ASP THR ALA VAL TYR TYR CYS ALA ALA ALA ARG PHE SEQRES 9 F 140 LEU GLN ASN ALA ARG LEU THR THR GLY PRO TYR ASP TYR SEQRES 10 F 140 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER GLY GLY SEQRES 11 F 140 GLY SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 E 140 MET GLY ALA GLN VAL GLN LEU GLN GLU SER GLY GLY GLY SEQRES 2 E 140 LEU VAL GLN PRO GLY GLY SER LEU ARG LEU SER CYS ALA SEQRES 3 E 140 ALA SER GLY PHE ILE PHE SER THR TYR SER MET GLY TRP SEQRES 4 E 140 PHE ARG GLN ALA PRO GLY LYS GLU ARG GLU PHE VAL ALA SEQRES 5 E 140 ALA SER THR TRP GLY GLY VAL THR THR ASN TYR ALA ASP SEQRES 6 E 140 SER VAL LYS GLY ARG PHE THR ILE SER THR ASP ASN ALA SEQRES 7 E 140 LYS ASN THR VAL TYR LEU GLN MET ASN SER LEU ASN SER SEQRES 8 E 140 GLY ASP THR ALA VAL TYR TYR CYS ALA ALA ALA ARG PHE SEQRES 9 E 140 LEU GLN ASN ALA ARG LEU THR THR GLY PRO TYR ASP TYR SEQRES 10 E 140 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER GLY GLY SEQRES 11 E 140 GLY SER LEU GLU HIS HIS HIS HIS HIS HIS HET HEM A 201 73 HET ACE A 202 7 HET HEM C 201 43 HET HEM B 201 43 HET HEM D 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM ACE ACETYL GROUP HETSYN HEM HEME FORMUL 7 HEM 4(C34 H32 FE N4 O4) FORMUL 8 ACE C2 H4 O FORMUL 12 HOH *440(H2 O) HELIX 1 AA1 SER A 3 GLY A 15 1 13 HELIX 2 AA2 LYS A 16 ALA A 19 5 4 HELIX 3 AA3 HIS A 20 PHE A 36 1 17 HELIX 4 AA4 PRO A 37 PHE A 43 5 7 HELIX 5 AA5 SER A 52 HIS A 72 1 21 HELIX 6 AA6 ASP A 75 LEU A 80 1 6 HELIX 7 AA7 LEU A 80 HIS A 89 1 10 HELIX 8 AA8 PRO A 95 LEU A 113 1 19 HELIX 9 AA9 PRO A 114 PHE A 117 5 4 HELIX 10 AB1 THR A 118 THR A 137 1 20 HELIX 11 AB2 SER C 3 GLY C 15 1 13 HELIX 12 AB3 LYS C 16 ALA C 19 5 4 HELIX 13 AB4 HIS C 20 PHE C 36 1 17 HELIX 14 AB5 PRO C 37 PHE C 43 5 7 HELIX 15 AB6 SER C 52 HIS C 72 1 21 HELIX 16 AB7 ASP C 75 LEU C 80 1 6 HELIX 17 AB8 LEU C 80 HIS C 89 1 10 HELIX 18 AB9 PRO C 95 LEU C 113 1 19 HELIX 19 AC1 PRO C 114 PHE C 117 5 4 HELIX 20 AC2 THR C 118 THR C 137 1 20 HELIX 21 AC3 THR B 4 GLY B 16 1 13 HELIX 22 AC4 ASN B 19 TYR B 35 1 17 HELIX 23 AC5 PRO B 36 GLY B 46 5 11 HELIX 24 AC6 THR B 50 ASN B 57 1 8 HELIX 25 AC7 ASN B 57 ALA B 76 1 20 HELIX 26 AC8 ASN B 80 PHE B 85 1 6 HELIX 27 AC9 PHE B 85 LYS B 95 1 11 HELIX 28 AD1 PRO B 100 GLY B 119 1 20 HELIX 29 AD2 LYS B 120 PHE B 122 5 3 HELIX 30 AD3 THR B 123 ALA B 142 1 20 HELIX 31 AD4 HIS B 143 HIS B 146 5 4 HELIX 32 AD5 GLU D 7 GLY D 16 1 10 HELIX 33 AD6 ASN D 19 TYR D 35 1 17 HELIX 34 AD7 PRO D 36 GLY D 46 5 11 HELIX 35 AD8 THR D 50 ASN D 57 1 8 HELIX 36 AD9 ASN D 57 ALA D 76 1 20 HELIX 37 AE1 ASN D 80 PHE D 85 1 6 HELIX 38 AE2 PHE D 85 LYS D 95 1 11 HELIX 39 AE3 PRO D 100 GLY D 119 1 20 HELIX 40 AE4 LYS D 120 PHE D 122 5 3 HELIX 41 AE5 THR D 123 ALA D 142 1 20 HELIX 42 AE6 HIS D 143 HIS D 146 5 4 HELIX 43 AE7 ILE F 31 SER F 33 5 3 HELIX 44 AE8 TRP F 56 VAL F 59 5 4 HELIX 45 AE9 ILE E 31 SER E 33 5 3 HELIX 46 AF1 TRP E 56 VAL E 59 5 4 HELIX 47 AF2 ASN E 90 THR E 94 5 5 HELIX 48 AF3 GLN E 106 THR E 112 5 7 SHEET 1 AA1 4 GLN F 6 SER F 10 0 SHEET 2 AA1 4 LEU F 21 SER F 28 -1 O ALA F 26 N GLN F 8 SHEET 3 AA1 4 THR F 81 MET F 86 -1 O MET F 86 N LEU F 21 SHEET 4 AA1 4 PHE F 71 ILE F 73 -1 N THR F 72 O GLN F 85 SHEET 1 AA2 6 LEU F 14 VAL F 15 0 SHEET 2 AA2 6 THR F 122 VAL F 126 1 O THR F 125 N VAL F 15 SHEET 3 AA2 6 ALA F 95 ARG F 103 -1 N TYR F 97 O THR F 122 SHEET 4 AA2 6 TYR F 35 GLN F 42 -1 N PHE F 40 O TYR F 98 SHEET 5 AA2 6 ARG F 48 SER F 54 -1 O GLU F 49 N ARG F 41 SHEET 6 AA2 6 THR F 61 TYR F 63 -1 O ASN F 62 N ALA F 53 SHEET 1 AA3 4 LEU F 14 VAL F 15 0 SHEET 2 AA3 4 THR F 122 VAL F 126 1 O THR F 125 N VAL F 15 SHEET 3 AA3 4 ALA F 95 ARG F 103 -1 N TYR F 97 O THR F 122 SHEET 4 AA3 4 TYR F 117 TRP F 118 -1 O TYR F 117 N ALA F 101 SHEET 1 AA4 4 GLN E 6 SER E 10 0 SHEET 2 AA4 4 LEU E 21 SER E 28 -1 O ALA E 26 N GLN E 8 SHEET 3 AA4 4 THR E 81 MET E 86 -1 O MET E 86 N LEU E 21 SHEET 4 AA4 4 PHE E 71 ASP E 76 -1 N THR E 72 O GLN E 85 SHEET 1 AA5 6 LEU E 14 VAL E 15 0 SHEET 2 AA5 6 THR E 122 VAL E 126 1 O THR E 125 N VAL E 15 SHEET 3 AA5 6 ALA E 95 ARG E 103 -1 N ALA E 95 O VAL E 124 SHEET 4 AA5 6 TYR E 35 GLN E 42 -1 N SER E 36 O ALA E 102 SHEET 5 AA5 6 GLU E 49 SER E 54 -1 O ALA E 52 N TRP E 39 SHEET 6 AA5 6 THR E 61 TYR E 63 -1 O ASN E 62 N ALA E 53 SHEET 1 AA6 4 LEU E 14 VAL E 15 0 SHEET 2 AA6 4 THR E 122 VAL E 126 1 O THR E 125 N VAL E 15 SHEET 3 AA6 4 ALA E 95 ARG E 103 -1 N ALA E 95 O VAL E 124 SHEET 4 AA6 4 TYR E 117 TRP E 118 -1 O TYR E 117 N ALA E 101 SSBOND 1 CYS F 25 CYS F 99 1555 1555 2.03 SSBOND 2 CYS E 25 CYS E 99 1555 1555 2.02 LINK NE2 HIS A 87 FE HEM A 201 1555 1555 2.01 LINK FE HEM A 201 O HOH A 307 1555 1555 2.30 LINK NE2 HIS C 87 FE HEM C 201 1555 1555 2.07 LINK FE HEM C 201 O HOH C 304 1555 1555 2.46 LINK NE2 HIS B 92 FE HEM B 201 1555 1555 2.09 LINK FE HEM B 201 O HOH B 336 1555 1555 2.35 LINK NE2 HIS D 92 FE HEM D 201 1555 1555 2.42 LINK FE HEM D 201 O HOH D 324 1555 1555 2.13 CRYST1 188.761 74.837 57.875 90.00 91.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005298 0.000000 0.000133 0.00000 SCALE2 0.000000 0.013362 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017284 0.00000