HEADER IMMUNE SYSTEM 11-FEB-24 8VZ9 TITLE CRYSTAL STRUCTURE OF MOUSE MAIT M2A TCR-MR1-5-OP-RU COMPLEX CAVEAT 8VZ9 2LJ A 304 HAS WRONG CHIRALITY AT ATOM C2' 2LJ A 304 HAS CAVEAT 2 8VZ9 WRONG CHIRALITY AT ATOM C3' 2LJ A 304 HAS WRONG CHIRALITY CAVEAT 3 8VZ9 AT ATOM C4' COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR HISTOCOMPATIBILITY COMPLEX CLASS I-RELATED GENE COMPND 3 PROTEIN; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MHC CLASS I-RELATED GENE PROTEIN,CLASS I HISTOCOMPATIBILITY COMPND 6 ANTIGEN-LIKE PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: MOUSE MAIT TRAV1-TRAJ33 A-CHAIN; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: MOUSE MAIT MBV13-2A B-CHAIN; COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MR1, MR1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: B2M; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_TAXID: 10090; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 22 ORGANISM_TAXID: 10090; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOUSE MAIT TCR RECOGNITION OF MR1, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR L.CIACCHI,J.ROSSJOHN,W.AWAD REVDAT 2 08-MAY-24 8VZ9 1 JRNL REVDAT 1 10-APR-24 8VZ9 0 JRNL AUTH L.CIACCHI,J.Y.W.MAK,J.P.LE,D.P.FAIRLIE,J.MCCLUSKEY, JRNL AUTH 2 A.J.CORBETT,J.ROSSJOHN,W.AWAD JRNL TITL MOUSE MUCOSAL-ASSOCIATED INVARIANT T CELL RECEPTOR JRNL TITL 2 RECOGNITION OF MR1 PRESENTING THE VITAMIN B METABOLITE, JRNL TITL 3 5-(2-OXOPROPYLIDENEAMINO)-6-D-RIBITYLAMINOURACIL. JRNL REF J.BIOL.CHEM. V. 300 07229 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38537698 JRNL DOI 10.1016/J.JBC.2024.107229 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2200 - 7.3200 1.00 1353 151 0.2363 0.2786 REMARK 3 2 7.3200 - 5.8100 1.00 1284 142 0.2826 0.2541 REMARK 3 3 5.8100 - 5.0800 1.00 1256 140 0.2384 0.2997 REMARK 3 4 5.0800 - 4.6200 1.00 1235 137 0.2133 0.2221 REMARK 3 5 4.6100 - 4.2800 1.00 1241 138 0.2204 0.2381 REMARK 3 6 4.2800 - 4.0300 1.00 1245 138 0.2274 0.2488 REMARK 3 7 4.0300 - 3.8300 1.00 1220 136 0.2502 0.2607 REMARK 3 8 3.8300 - 3.6600 1.00 1238 137 0.2472 0.2761 REMARK 3 9 3.6600 - 3.5200 1.00 1221 137 0.2693 0.2718 REMARK 3 10 3.5200 - 3.4000 0.99 1210 134 0.2769 0.3061 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6090 REMARK 3 ANGLE : 0.505 8336 REMARK 3 CHIRALITY : 0.041 933 REMARK 3 PLANARITY : 0.005 1078 REMARK 3 DIHEDRAL : 13.363 2025 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.9939 21.1790 7.9074 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.3060 REMARK 3 T33: 0.3382 T12: -0.0452 REMARK 3 T13: -0.0155 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.8739 L22: -0.1193 REMARK 3 L33: 0.7695 L12: 0.1585 REMARK 3 L13: 0.4893 L23: 0.0275 REMARK 3 S TENSOR REMARK 3 S11: 0.1045 S12: -0.0230 S13: 0.0297 REMARK 3 S21: -0.0258 S22: -0.0641 S23: 0.0400 REMARK 3 S31: -0.0709 S32: 0.0848 S33: 0.0034 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281495. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5-8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : POINTLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13899 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.400 REMARK 200 RESOLUTION RANGE LOW (A) : 49.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE (PH 7.5 - 8.5), REMARK 280 16-22% PEG 3350 AND 0.2M SODIUM ACETATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.12950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 88.79200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.12950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 88.79200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 0 REMARK 465 PRO A 193 REMARK 465 GLY A 194 REMARK 465 ILE A 195 REMARK 465 ASN A 251 REMARK 465 ASP A 252 REMARK 465 MET B 96 REMARK 465 MET C 0 REMARK 465 GLY C 1 REMARK 465 GLN C 2 REMARK 465 LYS C 125 REMARK 465 SER C 126 REMARK 465 SER C 127 REMARK 465 ASP C 128 REMARK 465 ASP C 138 REMARK 465 VAL C 151 REMARK 465 PRO C 192 REMARK 465 GLU C 193 REMARK 465 ASP C 194 REMARK 465 THR C 195 REMARK 465 PHE C 196 REMARK 465 PHE C 197 REMARK 465 PRO C 198 REMARK 465 SER C 199 REMARK 465 PRO C 200 REMARK 465 GLU C 201 REMARK 465 SER C 202 REMARK 465 SER C 203 REMARK 465 MET D 0 REMARK 465 GLU D 1 REMARK 465 ALA D 2 REMARK 465 ARG D 228 REMARK 465 ALA D 244 REMARK 465 ASP D 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 1 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LYS A 46 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 60 CG CD OE1 OE2 REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 ARG A 78 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 102 CG CD OE1 OE2 REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 ASN A 146 CG OD1 ND2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 LYS A 189 CG CD CE NZ REMARK 470 GLU A 190 CG CD OE1 OE2 REMARK 470 PHE A 192 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN A 217 CG OD1 ND2 REMARK 470 GLU A 219 CG CD OE1 OE2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 GLN A 223 CG CD OE1 NE2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 VAL A 230 CG1 CG2 REMARK 470 LEU A 246 CG CD1 CD2 REMARK 470 LYS B 16 CG CD CE NZ REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 LYS B 45 CG CD CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 GLU B 66 CG CD OE1 OE2 REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 MET C 11 CG SD CE REMARK 470 GLU C 39 CG CD OE1 OE2 REMARK 470 GLN C 41 CG CD OE1 NE2 REMARK 470 LYS C 55 CG CD CE NZ REMARK 470 ASP C 56 CG OD1 OD2 REMARK 470 ASN C 68 CG OD1 ND2 REMARK 470 GLU C 77 CG CD OE1 OE2 REMARK 470 LYS C 81 CG CD CE NZ REMARK 470 SER C 101 OG REMARK 470 LYS C 108 CG CD CE NZ REMARK 470 ILE C 111 CG1 CG2 CD1 REMARK 470 GLN C 112 CG CD OE1 NE2 REMARK 470 ASN C 113 CG OD1 ND2 REMARK 470 GLN C 120 CG CD OE1 NE2 REMARK 470 ARG C 122 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 123 CG OD1 OD2 REMARK 470 SER C 124 OG REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 GLN C 140 CG CD OE1 NE2 REMARK 470 ASN C 142 CG OD1 ND2 REMARK 470 SER C 144 OG REMARK 470 GLN C 145 CG CD OE1 NE2 REMARK 470 SER C 146 OG REMARK 470 LYS C 147 CG CD CE NZ REMARK 470 ASP C 148 CG OD1 OD2 REMARK 470 SER C 149 OG REMARK 470 ASP C 150 CG OD1 OD2 REMARK 470 ILE C 153 CG1 CG2 CD1 REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 MET C 161 CG SD CE REMARK 470 ARG C 162 CG CD NE CZ NH1 NH2 REMARK 470 MET C 164 CG SD CE REMARK 470 ASP C 165 CG OD1 OD2 REMARK 470 PHE C 166 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 SER C 168 OG REMARK 470 LYS C 177 CG CD CE NZ REMARK 470 PHE C 180 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN C 184 CG OD1 ND2 REMARK 470 ASN C 188 CG OD1 ND2 REMARK 470 SER C 189 OG REMARK 470 ASP D 62 CG OD1 OD2 REMARK 470 LYS D 65 CG CD CE NZ REMARK 470 GLU D 79 CG CD OE1 OE2 REMARK 470 LEU D 80 CG CD1 CD2 REMARK 470 SER D 84 OG REMARK 470 ASP D 95 CG OD1 OD2 REMARK 470 LYS D 97 CG CD CE NZ REMARK 470 VAL D 100 CG1 CG2 REMARK 470 GLU D 117 CG CD OE1 OE2 REMARK 470 ASP D 118 CG OD1 OD2 REMARK 470 ASN D 120 CG OD1 ND2 REMARK 470 LYS D 121 CG CD CE NZ REMARK 470 GLU D 126 CG CD OE1 OE2 REMARK 470 GLU D 131 CG CD OE1 OE2 REMARK 470 GLU D 134 CG CD OE1 OE2 REMARK 470 GLU D 136 CG CD OE1 OE2 REMARK 470 GLN D 141 CG CD OE1 NE2 REMARK 470 LYS D 142 CG CD CE NZ REMARK 470 GLU D 158 CG CD OE1 OE2 REMARK 470 ASN D 164 CG OD1 ND2 REMARK 470 LYS D 166 CG CD CE NZ REMARK 470 ASP D 175 CG OD1 OD2 REMARK 470 GLN D 177 CG CD OE1 NE2 REMARK 470 LEU D 179 CG CD1 CD2 REMARK 470 LYS D 180 CG CD CE NZ REMARK 470 GLU D 181 CG CD OE1 OE2 REMARK 470 GLN D 182 CG CD OE1 NE2 REMARK 470 LEU D 185 CG CD1 CD2 REMARK 470 ASN D 186 CG OD1 ND2 REMARK 470 ASP D 187 CG OD1 OD2 REMARK 470 SER D 188 OG REMARK 470 LEU D 191 CG CD1 CD2 REMARK 470 ARG D 196 CG CD NE CZ NH1 NH2 REMARK 470 SER D 198 OG REMARK 470 PHE D 201 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASN D 204 CG OD1 ND2 REMARK 470 ARG D 206 CG CD NE CZ NH1 NH2 REMARK 470 ASN D 207 CG OD1 ND2 REMARK 470 SER D 219 OG REMARK 470 GLU D 220 CG CD OE1 OE2 REMARK 470 ASN D 221 CG OD1 ND2 REMARK 470 ASP D 222 CG OD1 OD2 REMARK 470 GLU D 223 CG CD OE1 OE2 REMARK 470 THR D 225 OG1 CG2 REMARK 470 GLN D 226 CG CD OE1 NE2 REMARK 470 ASP D 227 CG OD1 OD2 REMARK 470 LYS D 230 CG CD CE NZ REMARK 470 GLN D 234 CG CD OE1 NE2 REMARK 470 GLU D 239 CG CD OE1 OE2 REMARK 470 ARG D 243 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 43 C8 2LJ A 304 1.74 REMARK 500 OH TYR A 152 O4' 2LJ A 304 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 110 114.20 -160.75 REMARK 500 PRO A 208 44.30 -81.30 REMARK 500 ASN A 217 -133.32 53.39 REMARK 500 GLU A 220 116.81 -165.10 REMARK 500 PRO A 248 80.54 -65.78 REMARK 500 GLU A 268 -178.85 -68.79 REMARK 500 THR B 70 -169.06 -129.85 REMARK 500 GLU C 39 -116.95 50.04 REMARK 500 TYR C 95 61.77 61.82 REMARK 500 ASN C 113 78.90 -150.35 REMARK 500 LYS C 147 -142.68 64.60 REMARK 500 MET C 164 -166.68 -126.73 REMARK 500 ASP C 165 33.91 -93.98 REMARK 500 LYS C 177 -118.79 51.96 REMARK 500 SER C 178 -0.11 66.42 REMARK 500 LEU D 98 49.45 -82.91 REMARK 500 HIS D 139 -60.53 -92.93 REMARK 500 PRO D 154 -167.27 -75.81 REMARK 500 LEU D 185 -116.12 54.52 REMARK 500 LYS D 230 71.92 53.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 8VZ9 A 0 270 UNP Q8HWB0 HMR1_MOUSE 18 288 DBREF 8VZ9 B -3 96 UNP P01887 B2MG_MOUSE 20 119 DBREF 8VZ9 C 0 203 PDB 8VZ9 8VZ9 0 203 DBREF 8VZ9 D 0 245 PDB 8VZ9 8VZ9 0 245 SEQADV 8VZ9 SER A 261 UNP Q8HWB0 CYS 279 CONFLICT SEQRES 1 A 271 THR ARG THR HIS SER LEU ARG TYR PHE ARG LEU ALA VAL SEQRES 2 A 271 SER ASP PRO GLY PRO VAL VAL PRO GLU PHE ILE SER VAL SEQRES 3 A 271 GLY TYR VAL ASP SER HIS PRO ILE THR THR TYR ASP SER SEQRES 4 A 271 VAL THR ARG GLN LYS GLU PRO LYS ALA PRO TRP MET ALA SEQRES 5 A 271 GLU ASN LEU ALA PRO ASP HIS TRP GLU ARG TYR THR GLN SEQRES 6 A 271 LEU LEU ARG GLY TRP GLN GLN THR PHE LYS ALA GLU LEU SEQRES 7 A 271 ARG HIS LEU GLN ARG HIS TYR ASN HIS SER GLY LEU HIS SEQRES 8 A 271 THR TYR GLN ARG MET ILE GLY CYS GLU LEU LEU GLU ASP SEQRES 9 A 271 GLY SER THR THR GLY PHE LEU GLN TYR ALA TYR ASP GLY SEQRES 10 A 271 GLN ASP PHE ILE ILE PHE ASN LYS ASP THR LEU SER TRP SEQRES 11 A 271 LEU ALA MET ASP TYR VAL ALA HIS ILE THR LYS GLN ALA SEQRES 12 A 271 TRP GLU ALA ASN LEU HIS GLU LEU GLN TYR GLN LYS ASN SEQRES 13 A 271 TRP LEU GLU GLU GLU CYS ILE ALA TRP LEU LYS ARG PHE SEQRES 14 A 271 LEU GLU TYR GLY ARG ASP THR LEU GLU ARG THR GLU HIS SEQRES 15 A 271 PRO VAL VAL ARG THR THR ARG LYS GLU THR PHE PRO GLY SEQRES 16 A 271 ILE THR THR PHE PHE CYS ARG ALA HIS GLY PHE TYR PRO SEQRES 17 A 271 PRO GLU ILE SER MET THR TRP MET LYS ASN GLY GLU GLU SEQRES 18 A 271 ILE ALA GLN GLU VAL ASP TYR GLY GLY VAL LEU PRO SER SEQRES 19 A 271 GLY ASP GLY THR TYR GLN THR TRP LEU SER VAL ASN LEU SEQRES 20 A 271 ASP PRO GLN SER ASN ASP VAL TYR SER CYS HIS VAL GLU SEQRES 21 A 271 HIS SER GLY ARG GLN MET VAL LEU GLU ALA PRO SEQRES 1 B 100 ALA ILE GLN LYS THR PRO GLN ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO PRO GLU ASN GLY LYS PRO ASN ILE LEU ASN CYS SEQRES 3 B 100 TYR VAL THR GLN PHE HIS PRO PRO HIS ILE GLU ILE GLN SEQRES 4 B 100 MET LEU LYS ASN GLY LYS LYS ILE PRO LYS VAL GLU MET SEQRES 5 B 100 SER ASP MET SER PHE SER LYS ASP TRP SER PHE TYR ILE SEQRES 6 B 100 LEU ALA HIS THR GLU PHE THR PRO THR GLU THR ASP THR SEQRES 7 B 100 TYR ALA CYS ARG VAL LYS HIS ALA SER MET ALA GLU PRO SEQRES 8 B 100 LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 1 C 204 MET GLY GLN GLY VAL GLU GLN PRO ALA LYS LEU MET SER SEQRES 2 C 204 VAL GLU GLY THR PHE ALA ARG VAL ASN CYS THR TYR SER SEQRES 3 C 204 THR SER GLY PHE ASN GLY LEU SER TRP TYR GLN GLN ARG SEQRES 4 C 204 GLU GLY GLN ALA PRO VAL PHE LEU SER TYR VAL VAL LEU SEQRES 5 C 204 ASP GLY LEU LYS ASP SER GLY HIS PHE SER THR PHE LEU SEQRES 6 C 204 SER ARG SER ASN GLY TYR SER TYR LEU LEU LEU THR GLU SEQRES 7 C 204 LEU GLN ILE LYS ASP SER ALA SER TYR LEU CYS ALA VAL SEQRES 8 C 204 ARG ASP SER ASN TYR GLN LEU ILE TRP GLY SER GLY THR SEQRES 9 C 204 LYS LEU ILE ILE LYS PRO ASN ILE GLN ASN PRO ASP PRO SEQRES 10 C 204 ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER ASP LYS SEQRES 11 C 204 SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN THR ASN SEQRES 12 C 204 VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE THR ASP SEQRES 13 C 204 LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE LYS SER SEQRES 14 C 204 ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP PHE ALA SEQRES 15 C 204 CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO GLU ASP SEQRES 16 C 204 THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 D 246 MET GLU ALA ALA VAL THR GLN SER PRO ARG ASN LYS VAL SEQRES 2 D 246 ALA VAL THR GLY GLY LYS VAL THR LEU SER CYS ASN GLN SEQRES 3 D 246 THR ASN ASN HIS ASN ASN MET TYR TRP TYR ARG GLN ASP SEQRES 4 D 246 THR GLY HIS GLY LEU ARG LEU ILE HIS TYR SER TYR GLY SEQRES 5 D 246 ALA GLY SER THR GLU LYS GLY ASP ILE PRO ASP GLY TYR SEQRES 6 D 246 LYS ALA SER ARG PRO SER GLN GLU ASN PHE SER LEU ILE SEQRES 7 D 246 LEU GLU LEU ALA THR PRO SER GLN THR SER VAL TYR PHE SEQRES 8 D 246 CYS ALA SER GLY ASP ALA LYS LEU GLY VAL GLY ALA GLU SEQRES 9 D 246 THR LEU TYR PHE GLY SER GLY THR ARG LEU THR VAL LEU SEQRES 10 D 246 GLU ASP LEU ASN LYS VAL PHE PRO PRO GLU VAL ALA VAL SEQRES 11 D 246 PHE GLU PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS SEQRES 12 D 246 ALA THR LEU VAL CYS LEU ALA THR GLY PHE PHE PRO ASP SEQRES 13 D 246 HIS VAL GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL SEQRES 14 D 246 HIS SER GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU SEQRES 15 D 246 GLN PRO ALA LEU ASN ASP SER TYR ALA LEU SER SER ARG SEQRES 16 D 246 LEU ARG VAL SER ALA THR PHE TRP GLN ASN PRO ARG ASN SEQRES 17 D 246 HIS PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU SEQRES 18 D 246 ASN ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR SEQRES 19 D 246 GLN ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET GOL A 302 6 HET GOL A 303 6 HET 2LJ A 304 22 HETNAM GOL GLYCEROL HETNAM 2LJ 1-DEOXY-1-({2,6-DIOXO-5-[(E)-PROPYLIDENEAMINO]-1,2,3,6- HETNAM 2 2LJ TETRAHYDROPYRIMIDIN-4-YL}AMINO)-D-RIBITOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 2LJ 5-(2-OXOPROPYLIDENEAMINO)-6-D-RIBITYLAMINOURACIL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 2LJ C12 H20 N4 O6 HELIX 1 AA1 ALA A 47 GLU A 52 1 6 HELIX 2 AA2 ASP A 57 TYR A 84 1 28 HELIX 3 AA3 ASP A 133 GLU A 144 1 12 HELIX 4 AA4 ASN A 146 GLU A 159 1 14 HELIX 5 AA5 GLU A 159 TYR A 171 1 13 HELIX 6 AA6 GLY A 172 GLU A 177 1 6 HELIX 7 AA7 GLN C 79 SER C 83 5 5 HELIX 8 AA8 THR D 82 THR D 86 5 5 HELIX 9 AA9 ASP D 118 VAL D 122 5 5 HELIX 10 AB1 SER D 133 THR D 140 1 8 HELIX 11 AB2 SER D 198 ASN D 204 1 7 SHEET 1 AA1 8 GLU A 44 PRO A 45 0 SHEET 2 AA1 8 HIS A 31 ASP A 37 -1 N THR A 35 O GLU A 44 SHEET 3 AA1 8 PHE A 22 VAL A 28 -1 N SER A 24 O TYR A 36 SHEET 4 AA1 8 THR A 2 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 91 LEU A 101 -1 O CYS A 98 N LEU A 5 SHEET 6 AA1 8 THR A 106 TYR A 114 -1 O ALA A 113 N GLN A 93 SHEET 7 AA1 8 GLN A 117 ASN A 123 -1 O ILE A 120 N TYR A 112 SHEET 8 AA1 8 SER A 128 ALA A 131 -1 O LEU A 130 N ILE A 121 SHEET 1 AA2 4 ARG A 185 LYS A 189 0 SHEET 2 AA2 4 THR A 197 PHE A 205 -1 O THR A 197 N LYS A 189 SHEET 3 AA2 4 TYR A 238 ASN A 245 -1 O THR A 240 N ALA A 202 SHEET 4 AA2 4 VAL A 225 PRO A 232 -1 N ASP A 226 O SER A 243 SHEET 1 AA3 3 SER A 211 LYS A 216 0 SHEET 2 AA3 3 TYR A 254 HIS A 260 -1 O SER A 255 N MET A 215 SHEET 3 AA3 3 ARG A 263 LEU A 267 -1 O MET A 265 N VAL A 258 SHEET 1 AA4 4 VAL B 6 SER B 8 0 SHEET 2 AA4 4 ASN B 18 PHE B 27 -1 O ASN B 21 N TYR B 7 SHEET 3 AA4 4 PHE B 59 PHE B 67 -1 O ALA B 63 N CYS B 22 SHEET 4 AA4 4 GLU B 47 MET B 48 -1 N GLU B 47 O HIS B 64 SHEET 1 AA5 4 VAL B 6 SER B 8 0 SHEET 2 AA5 4 ASN B 18 PHE B 27 -1 O ASN B 21 N TYR B 7 SHEET 3 AA5 4 PHE B 59 PHE B 67 -1 O ALA B 63 N CYS B 22 SHEET 4 AA5 4 SER B 52 PHE B 53 -1 N SER B 52 O TYR B 60 SHEET 1 AA6 4 LYS B 41 LYS B 42 0 SHEET 2 AA6 4 ILE B 32 LYS B 38 -1 N LYS B 38 O LYS B 41 SHEET 3 AA6 4 TYR B 75 HIS B 81 -1 O ARG B 78 N GLN B 35 SHEET 4 AA6 4 LYS B 88 TYR B 91 -1 O LYS B 88 N VAL B 79 SHEET 1 AA7 5 VAL C 4 GLU C 5 0 SHEET 2 AA7 5 ALA C 18 TYR C 24 -1 O THR C 23 N GLU C 5 SHEET 3 AA7 5 TYR C 70 LEU C 75 -1 O LEU C 73 N VAL C 20 SHEET 4 AA7 5 PHE C 60 SER C 65 -1 N SER C 65 O TYR C 70 SHEET 5 AA7 5 GLY C 53 ASP C 56 -1 N LYS C 55 O THR C 62 SHEET 1 AA8 5 LYS C 9 VAL C 13 0 SHEET 2 AA8 5 THR C 103 LYS C 108 1 O ILE C 106 N LEU C 10 SHEET 3 AA8 5 SER C 85 ARG C 91 -1 N TYR C 86 O THR C 103 SHEET 4 AA8 5 LEU C 32 GLN C 37 -1 N GLN C 37 O SER C 85 SHEET 5 AA8 5 VAL C 44 VAL C 49 -1 O SER C 47 N TRP C 34 SHEET 1 AA9 4 LYS C 9 VAL C 13 0 SHEET 2 AA9 4 THR C 103 LYS C 108 1 O ILE C 106 N LEU C 10 SHEET 3 AA9 4 SER C 85 ARG C 91 -1 N TYR C 86 O THR C 103 SHEET 4 AA9 4 LEU C 97 TRP C 99 -1 O ILE C 98 N VAL C 90 SHEET 1 AB1 3 ALA C 117 ARG C 122 0 SHEET 2 AB1 3 SER C 130 THR C 135 -1 O LEU C 133 N TYR C 119 SHEET 3 AB1 3 VAL C 172 ALA C 173 -1 O ALA C 173 N CYS C 132 SHEET 1 AB2 2 CYS C 157 MET C 161 0 SHEET 2 AB2 2 PHE C 166 SER C 170 -1 O SER C 170 N CYS C 157 SHEET 1 AB3 4 VAL D 4 SER D 7 0 SHEET 2 AB3 4 VAL D 19 GLN D 25 -1 O ASN D 24 N THR D 5 SHEET 3 AB3 4 SER D 75 LEU D 78 -1 O LEU D 76 N LEU D 21 SHEET 4 AB3 4 LYS D 65 SER D 67 -1 N LYS D 65 O ILE D 77 SHEET 1 AB4 6 ASN D 10 VAL D 14 0 SHEET 2 AB4 6 THR D 111 LEU D 116 1 O LEU D 116 N ALA D 13 SHEET 3 AB4 6 SER D 87 GLY D 94 -1 N SER D 87 O LEU D 113 SHEET 4 AB4 6 ASN D 31 GLN D 37 -1 N TYR D 35 O PHE D 90 SHEET 5 AB4 6 ARG D 44 SER D 49 -1 O ILE D 46 N TRP D 34 SHEET 6 AB4 6 GLU D 56 LYS D 57 -1 O GLU D 56 N TYR D 48 SHEET 1 AB5 4 GLU D 126 PHE D 130 0 SHEET 2 AB5 4 LEU D 145 THR D 150 -1 O LEU D 148 N ALA D 128 SHEET 3 AB5 4 LEU D 191 LEU D 195 -1 O LEU D 195 N LEU D 145 SHEET 4 AB5 4 VAL D 172 THR D 174 -1 N CYS D 173 O ARG D 194 SHEET 1 AB6 4 LYS D 166 GLU D 167 0 SHEET 2 AB6 4 VAL D 157 VAL D 163 -1 N VAL D 163 O LYS D 166 SHEET 3 AB6 4 HIS D 208 PHE D 215 -1 O GLN D 212 N SER D 160 SHEET 4 AB6 4 GLN D 234 TRP D 241 -1 O ALA D 240 N PHE D 209 SSBOND 1 CYS A 98 CYS A 161 1555 1555 2.03 SSBOND 2 CYS A 200 CYS A 256 1555 1555 2.03 SSBOND 3 CYS B 22 CYS B 77 1555 1555 2.03 SSBOND 4 CYS C 22 CYS C 88 1555 1555 2.03 SSBOND 5 CYS C 132 CYS C 182 1555 1555 2.03 SSBOND 6 CYS D 23 CYS D 91 1555 1555 2.03 SSBOND 7 CYS D 147 CYS D 211 1555 1555 2.03 LINK NZ LYS A 43 C7 2LJ A 304 1555 1555 1.43 CISPEP 1 HIS B 28 PRO B 29 0 6.96 CISPEP 2 SER D 7 PRO D 8 0 -2.71 CISPEP 3 PHE D 153 PRO D 154 0 -1.80 CRYST1 64.531 84.259 177.584 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015496 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005631 0.00000