data_8W0Q # _entry.id 8W0Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8W0Q pdb_00008w0q 10.2210/pdb8w0q/pdb WWPDB D_1000281590 ? ? BMRB 31146 ? 10.13018/BMR31146 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-07-03 2 'Structure model' 1 1 2024-07-10 3 'Structure model' 1 2 2024-07-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' 3 2 'Structure model' '_citation_author.identifier_ORCID' 4 3 'Structure model' '_citation.journal_volume' 5 3 'Structure model' '_citation.page_first' 6 3 'Structure model' '_citation.page_last' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8W0Q _pdbx_database_status.recvd_initial_deposition_date 2024-02-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Pembrolizumab CDR-H3 Loop Mimic' _pdbx_database_related.db_id 31146 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email sroche2@fau.edu _pdbx_contact_author.name_first Stephane _pdbx_contact_author.name_last Roche _pdbx_contact_author.name_mi P. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3019-2168 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Feig, M.' 1 0000-0001-9380-6422 'Roche, S.P.' 2 0000-0002-3019-2168 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 19 _citation.language ? _citation.page_first 1583 _citation.page_last 1592 _citation.title 'De Novo Synthesis and Structural Elucidation of CDR-H3 Loop Mimics.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.4c00236 _citation.pdbx_database_id_PubMed 38916527 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhao, G.' 1 ? primary 'Richaud, A.D.' 2 ? primary 'Williamson, R.T.' 3 ? primary 'Feig, M.' 4 ? primary 'Roche, S.P.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Pembrolizumab CDR-H3 Loop Mimic' _entity.formula_weight 2667.957 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code RWVARRDYRGDMGFDYWVWE _entity_poly.pdbx_seq_one_letter_code_can RWVARRDYRGDMGFDYWVWE _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 TRP n 1 3 VAL n 1 4 ALA n 1 5 ARG n 1 6 ARG n 1 7 ASP n 1 8 TYR n 1 9 ARG n 1 10 GLY n 1 11 ASP n 1 12 MET n 1 13 GLY n 1 14 PHE n 1 15 ASP n 1 16 TYR n 1 17 TRP n 1 18 VAL n 1 19 TRP n 1 20 GLU n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 20 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 1 1 ARG ARG A . n A 1 2 TRP 2 2 2 TRP TRP A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ALA 4 4 4 ALA ALA A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 ARG 6 6 6 ARG ARG A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 TYR 8 8 8 TYR TYR A . n A 1 9 ARG 9 9 9 ARG ARG A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 MET 12 12 12 MET MET A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 PHE 14 14 14 PHE PHE A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 TRP 19 19 19 TRP TRP A . n A 1 20 GLU 20 20 20 GLU GLU A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8W0Q _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8W0Q _struct.title 'Pembrolizumab CDR-H3 Loop Mimic' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8W0Q _struct_keywords.text 'CDR-H3 loop, antibody, bulged hairpin, conformational ensemble, beta-hairpin, peptide mimic, IMMUNE SYSTEM' _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8W0Q _struct_ref.pdbx_db_accession 8W0Q _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8W0Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 20 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8W0Q _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 20 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id AA1 _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 TRP A 2 ? ALA A 4 ? TRP A 2 ALA A 4 AA1 2 TRP A 17 ? TRP A 19 ? TRP A 17 TRP A 19 # _pdbx_struct_sheet_hbond.sheet_id AA1 _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id VAL _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 3 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 3 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id VAL _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 18 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id VAL _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 18 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 15 ? ? -109.59 -71.72 2 3 TYR A 8 ? ? 82.47 32.07 3 3 ASP A 15 ? ? -159.46 -14.47 4 4 TYR A 8 ? ? 82.02 29.74 5 4 ARG A 9 ? ? -104.33 -135.45 6 4 MET A 12 ? ? 54.65 17.32 7 5 ASP A 7 ? ? -89.41 30.45 8 5 PHE A 14 ? ? -30.18 118.40 9 5 TYR A 16 ? ? 94.39 48.79 10 7 TYR A 8 ? ? 74.86 33.63 11 8 ASP A 11 ? ? 66.77 -14.77 12 8 TYR A 16 ? ? 77.31 38.64 13 9 ASP A 7 ? ? -69.02 14.17 14 9 TYR A 16 ? ? 80.02 54.98 15 10 ASP A 15 ? ? -104.76 -63.41 16 11 ARG A 6 ? ? -144.71 -21.61 17 11 ASP A 7 ? ? 56.53 -170.40 18 12 PHE A 14 ? ? -29.50 146.38 19 12 ASP A 15 ? ? -101.89 -155.98 20 12 TYR A 16 ? ? 89.56 38.15 21 13 ARG A 6 ? ? -117.68 -97.31 22 13 ASP A 7 ? ? 18.95 78.47 23 13 TYR A 8 ? ? -86.02 44.64 24 14 PHE A 14 ? ? 81.46 161.15 25 14 TYR A 16 ? ? 71.99 40.11 26 15 ASP A 7 ? ? -163.72 6.28 27 15 TYR A 8 ? ? 71.66 34.17 28 15 ARG A 9 ? ? -179.14 -50.29 29 15 ASP A 11 ? ? 71.59 37.86 30 15 TYR A 16 ? ? 79.63 46.38 31 16 ARG A 5 ? ? -113.17 -151.18 32 16 ARG A 9 ? ? -168.49 103.04 33 16 MET A 12 ? ? -128.04 -142.12 34 16 ASP A 15 ? ? -99.48 -63.26 35 17 TYR A 8 ? ? 73.07 31.29 36 18 TYR A 16 ? ? 92.80 101.23 37 19 TYR A 8 ? ? -103.56 68.97 38 19 PHE A 14 ? ? -159.02 -64.17 39 19 ASP A 15 ? ? 98.05 -28.15 # _pdbx_nmr_ensemble.entry_id 8W0Q _pdbx_nmr_ensemble.conformers_calculated_total_number 53799 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'back calculated data agree with experimental NOESY spectrum' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8W0Q _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'target function' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '5.0 mM Hairpin, 90% H2O/10% DMSO' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% DMSO' _pdbx_nmr_sample_details.label 1H_BOCA5 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # _pdbx_nmr_exptl_sample.solution_id 1 _pdbx_nmr_exptl_sample.component Hairpin _pdbx_nmr_exptl_sample.concentration 5.0 _pdbx_nmr_exptl_sample.concentration_range ? _pdbx_nmr_exptl_sample.concentration_units mM _pdbx_nmr_exptl_sample.isotopic_labeling 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 291 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.ionic_strength na _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units 'Not defined' _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H TOCSY' 1 isotropic 2 1 1 '2D 1H-1H NOESY' 1 isotropic 3 1 1 '2D 1H-13C HSQC' 1 isotropic 4 1 1 '2D DQF-COSY' 2 isotropic 5 1 1 '2D 1H-15N HSQC' 3 isotropic # _pdbx_nmr_refine.entry_id 8W0Q _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;from MD snapshots a fixed number of confomers were selected and weighted to maximize reproduction of ensemble-averaged NMR observables ; _pdbx_nmr_refine.software_ordinal 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 processing VnmrJ 4.2 Varian 5 processing TopSpin 3.2 'Bruker Biospin' 2 'structure calculation' CHARMM c42a2 ;B. R. Brooks, C. L. Brooks III, A. D. Mackerell Jr., L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus ; 4 'peak picking' 'MestreLab (Mnova / MestReNova / MestReC)' 15.0.0 Mestrelab 3 refinement CHARMM c42a2 ;B. R. Brooks, C. L. Brooks III, A. D. Mackerell Jr., L. Nilsson, R. J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A. R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R. W. Pastor, C. B. Post, J. Z. Pu, M. Schaefer, B. Tidor, R. M. Venable, H. L. Woodcock, X. Wu, W. Yang, D. M. York, M. Karplus ; # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASP N N N N 41 ASP CA C N S 42 ASP C C N N 43 ASP O O N N 44 ASP CB C N N 45 ASP CG C N N 46 ASP OD1 O N N 47 ASP OD2 O N N 48 ASP OXT O N N 49 ASP H H N N 50 ASP H2 H N N 51 ASP HA H N N 52 ASP HB2 H N N 53 ASP HB3 H N N 54 ASP HD2 H N N 55 ASP HXT H N N 56 GLU N N N N 57 GLU CA C N S 58 GLU C C N N 59 GLU O O N N 60 GLU CB C N N 61 GLU CG C N N 62 GLU CD C N N 63 GLU OE1 O N N 64 GLU OE2 O N N 65 GLU OXT O N N 66 GLU H H N N 67 GLU H2 H N N 68 GLU HA H N N 69 GLU HB2 H N N 70 GLU HB3 H N N 71 GLU HG2 H N N 72 GLU HG3 H N N 73 GLU HE2 H N N 74 GLU HXT H N N 75 GLY N N N N 76 GLY CA C N N 77 GLY C C N N 78 GLY O O N N 79 GLY OXT O N N 80 GLY H H N N 81 GLY H2 H N N 82 GLY HA2 H N N 83 GLY HA3 H N N 84 GLY HXT H N N 85 MET N N N N 86 MET CA C N S 87 MET C C N N 88 MET O O N N 89 MET CB C N N 90 MET CG C N N 91 MET SD S N N 92 MET CE C N N 93 MET OXT O N N 94 MET H H N N 95 MET H2 H N N 96 MET HA H N N 97 MET HB2 H N N 98 MET HB3 H N N 99 MET HG2 H N N 100 MET HG3 H N N 101 MET HE1 H N N 102 MET HE2 H N N 103 MET HE3 H N N 104 MET HXT H N N 105 PHE N N N N 106 PHE CA C N S 107 PHE C C N N 108 PHE O O N N 109 PHE CB C N N 110 PHE CG C Y N 111 PHE CD1 C Y N 112 PHE CD2 C Y N 113 PHE CE1 C Y N 114 PHE CE2 C Y N 115 PHE CZ C Y N 116 PHE OXT O N N 117 PHE H H N N 118 PHE H2 H N N 119 PHE HA H N N 120 PHE HB2 H N N 121 PHE HB3 H N N 122 PHE HD1 H N N 123 PHE HD2 H N N 124 PHE HE1 H N N 125 PHE HE2 H N N 126 PHE HZ H N N 127 PHE HXT H N N 128 TRP N N N N 129 TRP CA C N S 130 TRP C C N N 131 TRP O O N N 132 TRP CB C N N 133 TRP CG C Y N 134 TRP CD1 C Y N 135 TRP CD2 C Y N 136 TRP NE1 N Y N 137 TRP CE2 C Y N 138 TRP CE3 C Y N 139 TRP CZ2 C Y N 140 TRP CZ3 C Y N 141 TRP CH2 C Y N 142 TRP OXT O N N 143 TRP H H N N 144 TRP H2 H N N 145 TRP HA H N N 146 TRP HB2 H N N 147 TRP HB3 H N N 148 TRP HD1 H N N 149 TRP HE1 H N N 150 TRP HE3 H N N 151 TRP HZ2 H N N 152 TRP HZ3 H N N 153 TRP HH2 H N N 154 TRP HXT H N N 155 TYR N N N N 156 TYR CA C N S 157 TYR C C N N 158 TYR O O N N 159 TYR CB C N N 160 TYR CG C Y N 161 TYR CD1 C Y N 162 TYR CD2 C Y N 163 TYR CE1 C Y N 164 TYR CE2 C Y N 165 TYR CZ C Y N 166 TYR OH O N N 167 TYR OXT O N N 168 TYR H H N N 169 TYR H2 H N N 170 TYR HA H N N 171 TYR HB2 H N N 172 TYR HB3 H N N 173 TYR HD1 H N N 174 TYR HD2 H N N 175 TYR HE1 H N N 176 TYR HE2 H N N 177 TYR HH H N N 178 TYR HXT H N N 179 VAL N N N N 180 VAL CA C N S 181 VAL C C N N 182 VAL O O N N 183 VAL CB C N N 184 VAL CG1 C N N 185 VAL CG2 C N N 186 VAL OXT O N N 187 VAL H H N N 188 VAL H2 H N N 189 VAL HA H N N 190 VAL HB H N N 191 VAL HG11 H N N 192 VAL HG12 H N N 193 VAL HG13 H N N 194 VAL HG21 H N N 195 VAL HG22 H N N 196 VAL HG23 H N N 197 VAL HXT H N N 198 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASP N CA sing N N 39 ASP N H sing N N 40 ASP N H2 sing N N 41 ASP CA C sing N N 42 ASP CA CB sing N N 43 ASP CA HA sing N N 44 ASP C O doub N N 45 ASP C OXT sing N N 46 ASP CB CG sing N N 47 ASP CB HB2 sing N N 48 ASP CB HB3 sing N N 49 ASP CG OD1 doub N N 50 ASP CG OD2 sing N N 51 ASP OD2 HD2 sing N N 52 ASP OXT HXT sing N N 53 GLU N CA sing N N 54 GLU N H sing N N 55 GLU N H2 sing N N 56 GLU CA C sing N N 57 GLU CA CB sing N N 58 GLU CA HA sing N N 59 GLU C O doub N N 60 GLU C OXT sing N N 61 GLU CB CG sing N N 62 GLU CB HB2 sing N N 63 GLU CB HB3 sing N N 64 GLU CG CD sing N N 65 GLU CG HG2 sing N N 66 GLU CG HG3 sing N N 67 GLU CD OE1 doub N N 68 GLU CD OE2 sing N N 69 GLU OE2 HE2 sing N N 70 GLU OXT HXT sing N N 71 GLY N CA sing N N 72 GLY N H sing N N 73 GLY N H2 sing N N 74 GLY CA C sing N N 75 GLY CA HA2 sing N N 76 GLY CA HA3 sing N N 77 GLY C O doub N N 78 GLY C OXT sing N N 79 GLY OXT HXT sing N N 80 MET N CA sing N N 81 MET N H sing N N 82 MET N H2 sing N N 83 MET CA C sing N N 84 MET CA CB sing N N 85 MET CA HA sing N N 86 MET C O doub N N 87 MET C OXT sing N N 88 MET CB CG sing N N 89 MET CB HB2 sing N N 90 MET CB HB3 sing N N 91 MET CG SD sing N N 92 MET CG HG2 sing N N 93 MET CG HG3 sing N N 94 MET SD CE sing N N 95 MET CE HE1 sing N N 96 MET CE HE2 sing N N 97 MET CE HE3 sing N N 98 MET OXT HXT sing N N 99 PHE N CA sing N N 100 PHE N H sing N N 101 PHE N H2 sing N N 102 PHE CA C sing N N 103 PHE CA CB sing N N 104 PHE CA HA sing N N 105 PHE C O doub N N 106 PHE C OXT sing N N 107 PHE CB CG sing N N 108 PHE CB HB2 sing N N 109 PHE CB HB3 sing N N 110 PHE CG CD1 doub Y N 111 PHE CG CD2 sing Y N 112 PHE CD1 CE1 sing Y N 113 PHE CD1 HD1 sing N N 114 PHE CD2 CE2 doub Y N 115 PHE CD2 HD2 sing N N 116 PHE CE1 CZ doub Y N 117 PHE CE1 HE1 sing N N 118 PHE CE2 CZ sing Y N 119 PHE CE2 HE2 sing N N 120 PHE CZ HZ sing N N 121 PHE OXT HXT sing N N 122 TRP N CA sing N N 123 TRP N H sing N N 124 TRP N H2 sing N N 125 TRP CA C sing N N 126 TRP CA CB sing N N 127 TRP CA HA sing N N 128 TRP C O doub N N 129 TRP C OXT sing N N 130 TRP CB CG sing N N 131 TRP CB HB2 sing N N 132 TRP CB HB3 sing N N 133 TRP CG CD1 doub Y N 134 TRP CG CD2 sing Y N 135 TRP CD1 NE1 sing Y N 136 TRP CD1 HD1 sing N N 137 TRP CD2 CE2 doub Y N 138 TRP CD2 CE3 sing Y N 139 TRP NE1 CE2 sing Y N 140 TRP NE1 HE1 sing N N 141 TRP CE2 CZ2 sing Y N 142 TRP CE3 CZ3 doub Y N 143 TRP CE3 HE3 sing N N 144 TRP CZ2 CH2 doub Y N 145 TRP CZ2 HZ2 sing N N 146 TRP CZ3 CH2 sing Y N 147 TRP CZ3 HZ3 sing N N 148 TRP CH2 HH2 sing N N 149 TRP OXT HXT sing N N 150 TYR N CA sing N N 151 TYR N H sing N N 152 TYR N H2 sing N N 153 TYR CA C sing N N 154 TYR CA CB sing N N 155 TYR CA HA sing N N 156 TYR C O doub N N 157 TYR C OXT sing N N 158 TYR CB CG sing N N 159 TYR CB HB2 sing N N 160 TYR CB HB3 sing N N 161 TYR CG CD1 doub Y N 162 TYR CG CD2 sing Y N 163 TYR CD1 CE1 sing Y N 164 TYR CD1 HD1 sing N N 165 TYR CD2 CE2 doub Y N 166 TYR CD2 HD2 sing N N 167 TYR CE1 CZ doub Y N 168 TYR CE1 HE1 sing N N 169 TYR CE2 CZ sing Y N 170 TYR CE2 HE2 sing N N 171 TYR CZ OH sing N N 172 TYR OH HH sing N N 173 TYR OXT HXT sing N N 174 VAL N CA sing N N 175 VAL N H sing N N 176 VAL N H2 sing N N 177 VAL CA C sing N N 178 VAL CA CB sing N N 179 VAL CA HA sing N N 180 VAL C O doub N N 181 VAL C OXT sing N N 182 VAL CB CG1 sing N N 183 VAL CB CG2 sing N N 184 VAL CB HB sing N N 185 VAL CG1 HG11 sing N N 186 VAL CG1 HG12 sing N N 187 VAL CG1 HG13 sing N N 188 VAL CG2 HG21 sing N N 189 VAL CG2 HG22 sing N N 190 VAL CG2 HG23 sing N N 191 VAL OXT HXT sing N N 192 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R21 GM132754' 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' 'R35 GM126948' 2 # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'Varian Mercury500' ? Varian 500 ? 2 'Bruker Neo NMR' ? Bruker 500 ? 3 'Bruker AVANCE III' ? Bruker 700 ? # _atom_sites.entry_id 8W0Q _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_