HEADER IMMUNE SYSTEM 21-FEB-24 8W2V TITLE SOLUTION STRUCTURE OF THE CD28 HINGE USED IN CHIMERIC ANTIGEN RECEPTOR TITLE 2 (CAR) T-CELLS COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL-SPECIFIC SURFACE GLYCOPROTEIN CD28; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TP44; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CD28; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CAR-T, CD28, IMMUNOTHERAPY, INTRINSIC DISORDER, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR V.FOLIMONOVA,X.CHEN,K.J.WALTERS REVDAT 1 11-SEP-24 8W2V 0 JRNL AUTH V.FOLIMONOVA,X.CHEN,H.NEGI,C.D.SCHWIETERS,J.LI,R.A.BYRD, JRNL AUTH 2 N.TAYLOR,P.YOUKHARIBACHE,K.J.WALTERS JRNL TITL CD28 HINGE USED IN CHIMERIC ANTIGEN RECEPTOR (CAR) T-CELLS JRNL TITL 2 EXHIBITS LOCAL STRUCTURE AND CONFORMATIONAL EXCHANGE AMIDST JRNL TITL 3 GLOBAL DISORDER. JRNL REF COMMUN BIOL V. 7 1072 2024 JRNL REFN ESSN 2399-3642 JRNL PMID 39217198 JRNL DOI 10.1038/S42003-024-06770-W REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8W2V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281745. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 284 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 70; 70 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 CD28 HINGE, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 20 UM ZINC SULPHATE, REMARK 210 1 MM PEFABLOC, 0.1 % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O; 0.6 MM [U- REMARK 210 100% 13C; U-100% 15N] CD28 HINGE, REMARK 210 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 20 UM REMARK 210 ZINC SULPHATE, 1 MM PEFABLOC, REMARK 210 0.1 % SODIUM AZIDE, 100% D2O; REMARK 210 0.45 MM [U-100% 13C; U-100% 15N] REMARK 210 CD28 HINGE, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 20 UM ZINC SULPHATE, REMARK 210 1 MM PEFABLOC, 0.1 % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O; 0.4 MM [U- REMARK 210 100% 15N] CD28 HINGE, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 20 UM ZINC REMARK 210 SULPHATE, 1 MM PEFABLOC, 0.1 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.28 MM [U-100% 15N] CD28 HINGE, REMARK 210 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 20 UM REMARK 210 ZINC SULPHATE, 1 MM PEFABLOC, REMARK 210 0.1 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D CON; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HN(CA)CO; 3D HNCO-COSY; 3D REMARK 210 HNCAN; 2D 1H-13C HSQC; 3D 1H-13C REMARK 210 NOESY; 3D 1H-13C CCH TOCSY; 3D REMARK 210 1H-13C HCCH TOCSY; 2D CACO; 3D REMARK 210 CANCO; 3D 1H-15N NOESY; 3D HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 800 MHZ; 850 MHZ; 900 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, MDDNMR, XEASY, REMARK 210 TALOS+ REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 122 113.16 -170.73 REMARK 500 1 ASN A 129 -96.49 59.55 REMARK 500 1 ILE A 133 144.10 63.97 REMARK 500 1 PHE A 146 153.07 62.18 REMARK 500 2 THR A 131 -52.99 75.15 REMARK 500 2 LYS A 138 176.64 71.74 REMARK 500 2 SER A 143 152.19 73.47 REMARK 500 2 PRO A 144 -82.84 -79.07 REMARK 500 2 PHE A 146 74.36 55.64 REMARK 500 3 VAL A 116 100.89 55.07 REMARK 500 3 ASP A 124 -33.69 -163.35 REMARK 500 3 LYS A 138 -177.87 58.66 REMARK 500 3 SER A 143 157.63 61.59 REMARK 500 3 PHE A 146 140.05 64.87 REMARK 500 4 ASN A 129 -89.50 59.54 REMARK 500 4 THR A 131 -46.44 -163.24 REMARK 500 4 PHE A 146 155.65 62.55 REMARK 500 5 ASP A 124 11.21 59.43 REMARK 500 5 PRO A 144 -79.16 -80.38 REMARK 500 6 THR A 131 75.54 46.88 REMARK 500 6 HIS A 139 -82.53 62.83 REMARK 500 6 SER A 143 153.33 73.71 REMARK 500 6 PHE A 146 76.22 57.44 REMARK 500 7 MET A 117 -43.54 74.20 REMARK 500 7 TYR A 122 151.01 -47.50 REMARK 500 7 LEU A 123 77.39 -60.86 REMARK 500 7 SER A 128 79.20 -151.01 REMARK 500 7 ILE A 132 -69.30 66.71 REMARK 500 7 ILE A 133 133.70 -32.42 REMARK 500 7 LYS A 136 148.63 73.03 REMARK 500 7 LEU A 140 -41.98 -141.36 REMARK 500 7 PHE A 146 139.39 65.42 REMARK 500 8 THR A 131 -52.70 -168.89 REMARK 500 8 LEU A 140 -161.55 51.66 REMARK 500 8 SER A 143 71.26 48.17 REMARK 500 8 PHE A 146 70.54 48.96 REMARK 500 9 TYR A 118 -62.97 151.08 REMARK 500 9 LEU A 123 60.19 8.60 REMARK 500 9 HIS A 134 -58.76 -131.44 REMARK 500 9 SER A 143 147.39 63.47 REMARK 500 9 PHE A 146 165.48 58.95 REMARK 500 10 VAL A 116 110.90 60.53 REMARK 500 10 TYR A 118 -62.67 153.11 REMARK 500 10 ILE A 132 105.92 57.69 REMARK 500 10 PHE A 146 129.53 63.61 REMARK 500 11 LEU A 123 -85.94 -133.37 REMARK 500 11 SER A 128 -41.99 -164.69 REMARK 500 11 SER A 143 157.19 60.87 REMARK 500 11 PHE A 146 77.55 55.14 REMARK 500 12 LEU A 123 38.80 34.73 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 31150 RELATED DB: BMRB REMARK 900 LOCAL STRUCTURE IN INTRINSICALLY DISORDERED CD28 HINGE USED IN CAR REMARK 900 T-CELLS DBREF 8W2V A 114 152 UNP P10747 CD28_HUMAN 114 152 SEQRES 1 A 39 ILE GLU VAL MET TYR PRO PRO PRO TYR LEU ASP ASN GLU SEQRES 2 A 39 LYS SER ASN GLY THR ILE ILE HIS VAL LYS GLY LYS HIS SEQRES 3 A 39 LEU CYS PRO SER PRO LEU PHE PRO GLY PRO SER LYS PRO HELIX 1 AA1 LEU A 123 ASN A 129 5 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1