data_8W35 # _entry.id 8W35 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8W35 pdb_00008w35 10.2210/pdb8w35/pdb WWPDB D_1000281782 ? ? EMDB EMD-43762 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-07-24 2 'Structure model' 1 1 2024-08-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Data collection' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category em_admin # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 2 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8W35 _pdbx_database_status.recvd_initial_deposition_date 2024-02-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Pectobacterium phage ZF40 Aca2 bound to its RNA' _pdbx_database_related.db_id EMD-43762 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email peter.fineran@otago.ac.nz _pdbx_contact_author.name_first Peter _pdbx_contact_author.name_last Fineran _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-4639-6704 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wilkinson, M.E.' 1 0000-0003-4738-9503 'Birkholz, N.' 2 0000-0001-5269-5228 'Kimanius, D.' 3 0000-0002-2662-6373 'Fineran, P.C.' 4 0000-0002-4639-6704 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Nature _citation.journal_id_ASTM NATUAS _citation.journal_id_CSD 0006 _citation.journal_id_ISSN 1476-4687 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 631 _citation.language ? _citation.page_first 670 _citation.page_last 677 _citation.title 'Phage anti-CRISPR control by an RNA- and DNA-binding helix-turn-helix protein.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41586-024-07644-1 _citation.pdbx_database_id_PubMed 38987591 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Birkholz, N.' 1 0000-0001-5269-5228 primary 'Kamata, K.' 2 ? primary 'Feussner, M.' 3 0009-0000-2803-0496 primary 'Wilkinson, M.E.' 4 ? primary 'Cuba Samaniego, C.' 5 ? primary 'Migur, A.' 6 ? primary 'Kimanius, D.' 7 ? primary 'Ceelen, M.' 8 0009-0002-9387-397X primary 'Went, S.C.' 9 ? primary 'Usher, B.' 10 ? primary 'Blower, T.R.' 11 0000-0002-7390-6458 primary 'Brown, C.M.' 12 0000-0003-0079-7067 primary 'Beisel, C.L.' 13 0000-0003-0650-9943 primary 'Weinberg, Z.' 14 0000-0002-6681-3624 primary 'Fagerlund, R.D.' 15 0000-0002-3939-1489 primary 'Jackson, S.A.' 16 0000-0002-4512-3093 primary 'Fineran, P.C.' 17 0000-0002-4639-6704 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Anti-CRISPR associated (Aca) protein, Aca2' 13710.401 2 ? ? ? ? 2 polymer syn 'IR2 and IR-RBS RNA' 13463.021 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SHGSMTNKELQAIRKLLMLDVSEAAEHIGRVSARSWQYWESGRSAVPDDVEQEMLDLASVRIEMMSAIDKRLADGERPKL RFYNKLDEYLADNPDHNVIGWRLSQSVAALYYTEGHADLI ; ;SHGSMTNKELQAIRKLLMLDVSEAAEHIGRVSARSWQYWESGRSAVPDDVEQEMLDLASVRIEMMSAIDKRLADGERPKL RFYNKLDEYLADNPDHNVIGWRLSQSVAALYYTEGHADLI ; A,B ? 2 polyribonucleotide no no AUCGGUUCGAGAUGGCUCGAAUCGCUCCUAACGAGGAUUCCA AUCGGUUCGAGAUGGCUCGAAUCGCUCCUAACGAGGAUUCCA C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 HIS n 1 3 GLY n 1 4 SER n 1 5 MET n 1 6 THR n 1 7 ASN n 1 8 LYS n 1 9 GLU n 1 10 LEU n 1 11 GLN n 1 12 ALA n 1 13 ILE n 1 14 ARG n 1 15 LYS n 1 16 LEU n 1 17 LEU n 1 18 MET n 1 19 LEU n 1 20 ASP n 1 21 VAL n 1 22 SER n 1 23 GLU n 1 24 ALA n 1 25 ALA n 1 26 GLU n 1 27 HIS n 1 28 ILE n 1 29 GLY n 1 30 ARG n 1 31 VAL n 1 32 SER n 1 33 ALA n 1 34 ARG n 1 35 SER n 1 36 TRP n 1 37 GLN n 1 38 TYR n 1 39 TRP n 1 40 GLU n 1 41 SER n 1 42 GLY n 1 43 ARG n 1 44 SER n 1 45 ALA n 1 46 VAL n 1 47 PRO n 1 48 ASP n 1 49 ASP n 1 50 VAL n 1 51 GLU n 1 52 GLN n 1 53 GLU n 1 54 MET n 1 55 LEU n 1 56 ASP n 1 57 LEU n 1 58 ALA n 1 59 SER n 1 60 VAL n 1 61 ARG n 1 62 ILE n 1 63 GLU n 1 64 MET n 1 65 MET n 1 66 SER n 1 67 ALA n 1 68 ILE n 1 69 ASP n 1 70 LYS n 1 71 ARG n 1 72 LEU n 1 73 ALA n 1 74 ASP n 1 75 GLY n 1 76 GLU n 1 77 ARG n 1 78 PRO n 1 79 LYS n 1 80 LEU n 1 81 ARG n 1 82 PHE n 1 83 TYR n 1 84 ASN n 1 85 LYS n 1 86 LEU n 1 87 ASP n 1 88 GLU n 1 89 TYR n 1 90 LEU n 1 91 ALA n 1 92 ASP n 1 93 ASN n 1 94 PRO n 1 95 ASP n 1 96 HIS n 1 97 ASN n 1 98 VAL n 1 99 ILE n 1 100 GLY n 1 101 TRP n 1 102 ARG n 1 103 LEU n 1 104 SER n 1 105 GLN n 1 106 SER n 1 107 VAL n 1 108 ALA n 1 109 ALA n 1 110 LEU n 1 111 TYR n 1 112 TYR n 1 113 THR n 1 114 GLU n 1 115 GLY n 1 116 HIS n 1 117 ALA n 1 118 ASP n 1 119 LEU n 1 120 ILE n 2 1 A n 2 2 U n 2 3 C n 2 4 G n 2 5 G n 2 6 U n 2 7 U n 2 8 C n 2 9 G n 2 10 A n 2 11 G n 2 12 A n 2 13 U n 2 14 G n 2 15 G n 2 16 C n 2 17 U n 2 18 C n 2 19 G n 2 20 A n 2 21 A n 2 22 U n 2 23 C n 2 24 G n 2 25 C n 2 26 U n 2 27 C n 2 28 C n 2 29 U n 2 30 A n 2 31 A n 2 32 C n 2 33 G n 2 34 A n 2 35 G n 2 36 G n 2 37 A n 2 38 U n 2 39 U n 2 40 C n 2 41 C n 2 42 A n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 120 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ZF40_0030 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pectobacterium phage ZF40' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1127516 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 42 _pdbx_entity_src_syn.organism_scientific 'Pectobacterium phage ZF40' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 1127516 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -3 ? ? ? A . n A 1 2 HIS 2 -2 ? ? ? A . n A 1 3 GLY 3 -1 ? ? ? A . n A 1 4 SER 4 0 0 SER SER A . n A 1 5 MET 5 1 1 MET MET A . n A 1 6 THR 6 2 2 THR THR A . n A 1 7 ASN 7 3 3 ASN ASN A . n A 1 8 LYS 8 4 4 LYS LYS A . n A 1 9 GLU 9 5 5 GLU GLU A . n A 1 10 LEU 10 6 6 LEU LEU A . n A 1 11 GLN 11 7 7 GLN GLN A . n A 1 12 ALA 12 8 8 ALA ALA A . n A 1 13 ILE 13 9 9 ILE ILE A . n A 1 14 ARG 14 10 10 ARG ARG A . n A 1 15 LYS 15 11 11 LYS LYS A . n A 1 16 LEU 16 12 12 LEU LEU A . n A 1 17 LEU 17 13 13 LEU LEU A . n A 1 18 MET 18 14 14 MET MET A . n A 1 19 LEU 19 15 15 LEU LEU A . n A 1 20 ASP 20 16 16 ASP ASP A . n A 1 21 VAL 21 17 17 VAL VAL A . n A 1 22 SER 22 18 18 SER SER A . n A 1 23 GLU 23 19 19 GLU GLU A . n A 1 24 ALA 24 20 20 ALA ALA A . n A 1 25 ALA 25 21 21 ALA ALA A . n A 1 26 GLU 26 22 22 GLU GLU A . n A 1 27 HIS 27 23 23 HIS HIS A . n A 1 28 ILE 28 24 24 ILE ILE A . n A 1 29 GLY 29 25 25 GLY GLY A . n A 1 30 ARG 30 26 26 ARG ARG A . n A 1 31 VAL 31 27 27 VAL VAL A . n A 1 32 SER 32 28 28 SER SER A . n A 1 33 ALA 33 29 29 ALA ALA A . n A 1 34 ARG 34 30 30 ARG ARG A . n A 1 35 SER 35 31 31 SER SER A . n A 1 36 TRP 36 32 32 TRP TRP A . n A 1 37 GLN 37 33 33 GLN GLN A . n A 1 38 TYR 38 34 34 TYR TYR A . n A 1 39 TRP 39 35 35 TRP TRP A . n A 1 40 GLU 40 36 36 GLU GLU A . n A 1 41 SER 41 37 37 SER SER A . n A 1 42 GLY 42 38 38 GLY GLY A . n A 1 43 ARG 43 39 39 ARG ARG A . n A 1 44 SER 44 40 40 SER SER A . n A 1 45 ALA 45 41 41 ALA ALA A . n A 1 46 VAL 46 42 42 VAL VAL A . n A 1 47 PRO 47 43 43 PRO PRO A . n A 1 48 ASP 48 44 44 ASP ASP A . n A 1 49 ASP 49 45 45 ASP ASP A . n A 1 50 VAL 50 46 46 VAL VAL A . n A 1 51 GLU 51 47 47 GLU GLU A . n A 1 52 GLN 52 48 48 GLN GLN A . n A 1 53 GLU 53 49 49 GLU GLU A . n A 1 54 MET 54 50 50 MET MET A . n A 1 55 LEU 55 51 51 LEU LEU A . n A 1 56 ASP 56 52 52 ASP ASP A . n A 1 57 LEU 57 53 53 LEU LEU A . n A 1 58 ALA 58 54 54 ALA ALA A . n A 1 59 SER 59 55 55 SER SER A . n A 1 60 VAL 60 56 56 VAL VAL A . n A 1 61 ARG 61 57 57 ARG ARG A . n A 1 62 ILE 62 58 58 ILE ILE A . n A 1 63 GLU 63 59 59 GLU GLU A . n A 1 64 MET 64 60 60 MET MET A . n A 1 65 MET 65 61 61 MET MET A . n A 1 66 SER 66 62 62 SER SER A . n A 1 67 ALA 67 63 63 ALA ALA A . n A 1 68 ILE 68 64 64 ILE ILE A . n A 1 69 ASP 69 65 65 ASP ASP A . n A 1 70 LYS 70 66 66 LYS LYS A . n A 1 71 ARG 71 67 67 ARG ARG A . n A 1 72 LEU 72 68 68 LEU LEU A . n A 1 73 ALA 73 69 69 ALA ALA A . n A 1 74 ASP 74 70 70 ASP ASP A . n A 1 75 GLY 75 71 71 GLY GLY A . n A 1 76 GLU 76 72 72 GLU GLU A . n A 1 77 ARG 77 73 73 ARG ARG A . n A 1 78 PRO 78 74 74 PRO PRO A . n A 1 79 LYS 79 75 75 LYS LYS A . n A 1 80 LEU 80 76 76 LEU LEU A . n A 1 81 ARG 81 77 77 ARG ARG A . n A 1 82 PHE 82 78 78 PHE PHE A . n A 1 83 TYR 83 79 79 TYR TYR A . n A 1 84 ASN 84 80 80 ASN ASN A . n A 1 85 LYS 85 81 81 LYS LYS A . n A 1 86 LEU 86 82 82 LEU LEU A . n A 1 87 ASP 87 83 83 ASP ASP A . n A 1 88 GLU 88 84 84 GLU GLU A . n A 1 89 TYR 89 85 85 TYR TYR A . n A 1 90 LEU 90 86 86 LEU LEU A . n A 1 91 ALA 91 87 87 ALA ALA A . n A 1 92 ASP 92 88 88 ASP ASP A . n A 1 93 ASN 93 89 89 ASN ASN A . n A 1 94 PRO 94 90 90 PRO PRO A . n A 1 95 ASP 95 91 91 ASP ASP A . n A 1 96 HIS 96 92 92 HIS HIS A . n A 1 97 ASN 97 93 93 ASN ASN A . n A 1 98 VAL 98 94 94 VAL VAL A . n A 1 99 ILE 99 95 95 ILE ILE A . n A 1 100 GLY 100 96 96 GLY GLY A . n A 1 101 TRP 101 97 97 TRP TRP A . n A 1 102 ARG 102 98 98 ARG ARG A . n A 1 103 LEU 103 99 99 LEU LEU A . n A 1 104 SER 104 100 100 SER SER A . n A 1 105 GLN 105 101 101 GLN GLN A . n A 1 106 SER 106 102 102 SER SER A . n A 1 107 VAL 107 103 103 VAL VAL A . n A 1 108 ALA 108 104 104 ALA ALA A . n A 1 109 ALA 109 105 105 ALA ALA A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 TYR 111 107 107 TYR TYR A . n A 1 112 TYR 112 108 108 TYR TYR A . n A 1 113 THR 113 109 109 THR THR A . n A 1 114 GLU 114 110 110 GLU GLU A . n A 1 115 GLY 115 111 111 GLY GLY A . n A 1 116 HIS 116 112 112 HIS HIS A . n A 1 117 ALA 117 113 113 ALA ALA A . n A 1 118 ASP 118 114 114 ASP ASP A . n A 1 119 LEU 119 115 115 LEU LEU A . n A 1 120 ILE 120 116 116 ILE ILE A . n B 1 1 SER 1 -3 ? ? ? B . n B 1 2 HIS 2 -2 ? ? ? B . n B 1 3 GLY 3 -1 ? ? ? B . n B 1 4 SER 4 0 0 SER SER B . n B 1 5 MET 5 1 1 MET MET B . n B 1 6 THR 6 2 2 THR THR B . n B 1 7 ASN 7 3 3 ASN ASN B . n B 1 8 LYS 8 4 4 LYS LYS B . n B 1 9 GLU 9 5 5 GLU GLU B . n B 1 10 LEU 10 6 6 LEU LEU B . n B 1 11 GLN 11 7 7 GLN GLN B . n B 1 12 ALA 12 8 8 ALA ALA B . n B 1 13 ILE 13 9 9 ILE ILE B . n B 1 14 ARG 14 10 10 ARG ARG B . n B 1 15 LYS 15 11 11 LYS LYS B . n B 1 16 LEU 16 12 12 LEU LEU B . n B 1 17 LEU 17 13 13 LEU LEU B . n B 1 18 MET 18 14 14 MET MET B . n B 1 19 LEU 19 15 15 LEU LEU B . n B 1 20 ASP 20 16 16 ASP ASP B . n B 1 21 VAL 21 17 17 VAL VAL B . n B 1 22 SER 22 18 18 SER SER B . n B 1 23 GLU 23 19 19 GLU GLU B . n B 1 24 ALA 24 20 20 ALA ALA B . n B 1 25 ALA 25 21 21 ALA ALA B . n B 1 26 GLU 26 22 22 GLU GLU B . n B 1 27 HIS 27 23 23 HIS HIS B . n B 1 28 ILE 28 24 24 ILE ILE B . n B 1 29 GLY 29 25 25 GLY GLY B . n B 1 30 ARG 30 26 26 ARG ARG B . n B 1 31 VAL 31 27 27 VAL VAL B . n B 1 32 SER 32 28 28 SER SER B . n B 1 33 ALA 33 29 29 ALA ALA B . n B 1 34 ARG 34 30 30 ARG ARG B . n B 1 35 SER 35 31 31 SER SER B . n B 1 36 TRP 36 32 32 TRP TRP B . n B 1 37 GLN 37 33 33 GLN GLN B . n B 1 38 TYR 38 34 34 TYR TYR B . n B 1 39 TRP 39 35 35 TRP TRP B . n B 1 40 GLU 40 36 36 GLU GLU B . n B 1 41 SER 41 37 37 SER SER B . n B 1 42 GLY 42 38 38 GLY GLY B . n B 1 43 ARG 43 39 39 ARG ARG B . n B 1 44 SER 44 40 40 SER SER B . n B 1 45 ALA 45 41 41 ALA ALA B . n B 1 46 VAL 46 42 42 VAL VAL B . n B 1 47 PRO 47 43 43 PRO PRO B . n B 1 48 ASP 48 44 44 ASP ASP B . n B 1 49 ASP 49 45 45 ASP ASP B . n B 1 50 VAL 50 46 46 VAL VAL B . n B 1 51 GLU 51 47 47 GLU GLU B . n B 1 52 GLN 52 48 48 GLN GLN B . n B 1 53 GLU 53 49 49 GLU GLU B . n B 1 54 MET 54 50 50 MET MET B . n B 1 55 LEU 55 51 51 LEU LEU B . n B 1 56 ASP 56 52 52 ASP ASP B . n B 1 57 LEU 57 53 53 LEU LEU B . n B 1 58 ALA 58 54 54 ALA ALA B . n B 1 59 SER 59 55 55 SER SER B . n B 1 60 VAL 60 56 56 VAL VAL B . n B 1 61 ARG 61 57 57 ARG ARG B . n B 1 62 ILE 62 58 58 ILE ILE B . n B 1 63 GLU 63 59 59 GLU GLU B . n B 1 64 MET 64 60 60 MET MET B . n B 1 65 MET 65 61 61 MET MET B . n B 1 66 SER 66 62 62 SER SER B . n B 1 67 ALA 67 63 63 ALA ALA B . n B 1 68 ILE 68 64 64 ILE ILE B . n B 1 69 ASP 69 65 65 ASP ASP B . n B 1 70 LYS 70 66 66 LYS LYS B . n B 1 71 ARG 71 67 67 ARG ARG B . n B 1 72 LEU 72 68 68 LEU LEU B . n B 1 73 ALA 73 69 69 ALA ALA B . n B 1 74 ASP 74 70 70 ASP ASP B . n B 1 75 GLY 75 71 71 GLY GLY B . n B 1 76 GLU 76 72 72 GLU GLU B . n B 1 77 ARG 77 73 73 ARG ARG B . n B 1 78 PRO 78 74 74 PRO PRO B . n B 1 79 LYS 79 75 75 LYS LYS B . n B 1 80 LEU 80 76 76 LEU LEU B . n B 1 81 ARG 81 77 77 ARG ARG B . n B 1 82 PHE 82 78 78 PHE PHE B . n B 1 83 TYR 83 79 79 TYR TYR B . n B 1 84 ASN 84 80 80 ASN ASN B . n B 1 85 LYS 85 81 81 LYS LYS B . n B 1 86 LEU 86 82 82 LEU LEU B . n B 1 87 ASP 87 83 83 ASP ASP B . n B 1 88 GLU 88 84 84 GLU GLU B . n B 1 89 TYR 89 85 85 TYR TYR B . n B 1 90 LEU 90 86 86 LEU LEU B . n B 1 91 ALA 91 87 87 ALA ALA B . n B 1 92 ASP 92 88 88 ASP ASP B . n B 1 93 ASN 93 89 89 ASN ASN B . n B 1 94 PRO 94 90 90 PRO PRO B . n B 1 95 ASP 95 91 91 ASP ASP B . n B 1 96 HIS 96 92 92 HIS HIS B . n B 1 97 ASN 97 93 93 ASN ASN B . n B 1 98 VAL 98 94 94 VAL VAL B . n B 1 99 ILE 99 95 95 ILE ILE B . n B 1 100 GLY 100 96 96 GLY GLY B . n B 1 101 TRP 101 97 97 TRP TRP B . n B 1 102 ARG 102 98 98 ARG ARG B . n B 1 103 LEU 103 99 99 LEU LEU B . n B 1 104 SER 104 100 100 SER SER B . n B 1 105 GLN 105 101 101 GLN GLN B . n B 1 106 SER 106 102 102 SER SER B . n B 1 107 VAL 107 103 103 VAL VAL B . n B 1 108 ALA 108 104 104 ALA ALA B . n B 1 109 ALA 109 105 105 ALA ALA B . n B 1 110 LEU 110 106 106 LEU LEU B . n B 1 111 TYR 111 107 107 TYR TYR B . n B 1 112 TYR 112 108 108 TYR TYR B . n B 1 113 THR 113 109 109 THR THR B . n B 1 114 GLU 114 110 110 GLU GLU B . n B 1 115 GLY 115 111 111 GLY GLY B . n B 1 116 HIS 116 112 112 HIS HIS B . n B 1 117 ALA 117 113 113 ALA ALA B . n B 1 118 ASP 118 114 114 ASP ASP B . n B 1 119 LEU 119 115 115 LEU LEU B . n B 1 120 ILE 120 116 116 ILE ILE B . n C 2 1 A 1 1 1 A A C . n C 2 2 U 2 2 2 U U C . n C 2 3 C 3 3 3 C C C . n C 2 4 G 4 4 4 G G C . n C 2 5 G 5 5 5 G G C . n C 2 6 U 6 6 6 U U C . n C 2 7 U 7 7 7 U U C . n C 2 8 C 8 8 8 C C C . n C 2 9 G 9 9 9 G G C . n C 2 10 A 10 10 10 A A C . n C 2 11 G 11 11 11 G G C . n C 2 12 A 12 12 12 A A C . n C 2 13 U 13 13 13 U U C . n C 2 14 G 14 14 14 G G C . n C 2 15 G 15 15 15 G G C . n C 2 16 C 16 16 16 C C C . n C 2 17 U 17 17 17 U U C . n C 2 18 C 18 18 18 C C C . n C 2 19 G 19 19 19 G G C . n C 2 20 A 20 20 20 A A C . n C 2 21 A 21 21 21 A A C . n C 2 22 U 22 22 22 U U C . n C 2 23 C 23 23 23 C C C . n C 2 24 G 24 24 24 G G C . n C 2 25 C 25 25 25 C C C . n C 2 26 U 26 26 26 U U C . n C 2 27 C 27 27 27 C C C . n C 2 28 C 28 28 28 C C C . n C 2 29 U 29 29 29 U U C . n C 2 30 A 30 30 ? ? ? C . n C 2 31 A 31 31 ? ? ? C . n C 2 32 C 32 32 ? ? ? C . n C 2 33 G 33 33 33 G G C . n C 2 34 A 34 34 34 A A C . n C 2 35 G 35 35 35 G G C . n C 2 36 G 36 36 36 G G C . n C 2 37 A 37 37 37 A A C . n C 2 38 U 38 38 ? ? ? C . n C 2 39 U 39 39 ? ? ? C . n C 2 40 C 40 40 ? ? ? C . n C 2 41 C 41 41 ? ? ? C . n C 2 42 A 42 42 ? ? ? C . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8W35 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8W35 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8W35 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8W35 _struct.title 'Aca2 from Pectobacterium phage ZF40 bound to RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8W35 _struct_keywords.text 'HTH protein, CRISPR, RNA-binding protein, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords 'RNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP H9C180_9CAUD H9C180 ? 1 ;MTNKELQAIRKLLMLDVSEAAEHIGRVSARSWQYWESGRSAVPDDVEQEMLDLASVRIEMMSAIDKRLADGERPKLRFYN KLDEYLADNPDHNVIGWRLSQSVAALYYTEGHADLI ; 1 2 PDB 8W35 8W35 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8W35 A 5 ? 120 ? H9C180 1 ? 116 ? 1 116 2 1 8W35 B 5 ? 120 ? H9C180 1 ? 116 ? 1 116 3 2 8W35 C 1 ? 42 ? 8W35 1 ? 42 ? 1 42 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8W35 SER A 1 ? UNP H9C180 ? ? 'expression tag' -3 1 1 8W35 HIS A 2 ? UNP H9C180 ? ? 'expression tag' -2 2 1 8W35 GLY A 3 ? UNP H9C180 ? ? 'expression tag' -1 3 1 8W35 SER A 4 ? UNP H9C180 ? ? 'expression tag' 0 4 2 8W35 SER B 1 ? UNP H9C180 ? ? 'expression tag' -3 5 2 8W35 HIS B 2 ? UNP H9C180 ? ? 'expression tag' -2 6 2 8W35 GLY B 3 ? UNP H9C180 ? ? 'expression tag' -1 7 2 8W35 SER B 4 ? UNP H9C180 ? ? 'expression tag' 0 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 6 ? LEU A 17 ? THR A 2 LEU A 13 1 ? 12 HELX_P HELX_P2 AA2 ASP A 20 ? ILE A 28 ? ASP A 16 ILE A 24 1 ? 9 HELX_P HELX_P3 AA3 SER A 32 ? SER A 41 ? SER A 28 SER A 37 1 ? 10 HELX_P HELX_P4 AA4 PRO A 47 ? ALA A 73 ? PRO A 43 ALA A 69 1 ? 27 HELX_P HELX_P5 AA5 LYS A 85 ? ASN A 93 ? LYS A 81 ASN A 89 1 ? 9 HELX_P HELX_P6 AA6 ASN A 97 ? GLU A 114 ? ASN A 93 GLU A 110 1 ? 18 HELX_P HELX_P7 AA7 THR B 6 ? LEU B 17 ? THR B 2 LEU B 13 1 ? 12 HELX_P HELX_P8 AA8 ASP B 20 ? ILE B 28 ? ASP B 16 ILE B 24 1 ? 9 HELX_P HELX_P9 AA9 SER B 32 ? GLY B 42 ? SER B 28 GLY B 38 1 ? 11 HELX_P HELX_P10 AB1 PRO B 47 ? ALA B 73 ? PRO B 43 ALA B 69 1 ? 27 HELX_P HELX_P11 AB2 LYS B 85 ? ASN B 93 ? LYS B 81 ASN B 89 1 ? 9 HELX_P HELX_P12 AB3 ASN B 97 ? GLU B 114 ? ASN B 93 GLU B 110 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? C C 3 N3 ? ? ? 1_555 C G 24 N1 ? ? C C 3 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? C C 3 N4 ? ? ? 1_555 C G 24 O6 ? ? C C 3 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? C C 3 O2 ? ? ? 1_555 C G 24 N2 ? ? C C 3 C G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 23 N3 ? ? C G 4 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 23 O2 ? ? C G 4 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 23 N4 ? ? C G 4 C C 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? C G 5 N1 ? ? ? 1_555 C U 22 O2 ? ? C G 5 C U 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? C G 5 O6 ? ? ? 1_555 C U 22 N3 ? ? C G 5 C U 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? C U 6 N3 ? ? ? 1_555 C A 21 N1 ? ? C U 6 C A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C U 6 O4 ? ? ? 1_555 C A 21 N6 ? ? C U 6 C A 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C U 7 N3 ? ? ? 1_555 C A 20 N1 ? ? C U 7 C A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C U 7 O4 ? ? ? 1_555 C A 20 N6 ? ? C U 7 C A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C C 8 N3 ? ? ? 1_555 C G 19 N1 ? ? C C 8 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C C 8 N4 ? ? ? 1_555 C G 19 O6 ? ? C C 8 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C C 8 O2 ? ? ? 1_555 C G 19 N2 ? ? C C 8 C G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? C G 9 N1 ? ? ? 1_555 C C 18 N3 ? ? C G 9 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? C G 9 N2 ? ? ? 1_555 C C 18 O2 ? ? C G 9 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? C G 9 O6 ? ? ? 1_555 C C 18 N4 ? ? C G 9 C C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? C A 10 N1 ? ? ? 1_555 C U 17 N3 ? ? C A 10 C U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C A 10 N6 ? ? ? 1_555 C U 17 O4 ? ? C A 10 C U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C G 11 N1 ? ? ? 1_555 C C 16 N3 ? ? C G 11 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C G 11 N2 ? ? ? 1_555 C C 16 O2 ? ? C G 11 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C G 11 O6 ? ? ? 1_555 C C 16 N4 ? ? C G 11 C C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C U 26 O4 ? ? ? 1_555 C A 37 N6 ? ? C U 26 C A 37 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog25 hydrog ? ? C C 27 N3 ? ? ? 1_555 C G 36 N1 ? ? C C 27 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C C 27 N4 ? ? ? 1_555 C G 36 O6 ? ? C C 27 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C C 27 O2 ? ? ? 1_555 C G 36 N2 ? ? C C 27 C G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C C 28 N3 ? ? ? 1_555 C G 35 N1 ? ? C C 28 C G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C C 28 N4 ? ? ? 1_555 C G 35 O6 ? ? C C 28 C G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C C 28 O2 ? ? ? 1_555 C G 35 N2 ? ? C C 28 C G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C U 29 N3 ? ? ? 1_555 C A 34 N1 ? ? C U 29 C A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C U 29 O4 ? ? ? 1_555 C A 34 N6 ? ? C U 29 C A 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA2 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 LYS A 79 ? LEU A 80 ? LYS A 75 LEU A 76 AA1 2 ASP A 118 ? LEU A 119 ? ASP A 114 LEU A 115 AA2 1 LYS B 79 ? LEU B 80 ? LYS B 75 LEU B 76 AA2 2 ASP B 118 ? LEU B 119 ? ASP B 114 LEU B 115 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU A 80 ? N LEU A 76 O ASP A 118 ? O ASP A 114 AA2 1 2 N LEU B 80 ? N LEU B 76 O ASP B 118 ? O ASP B 114 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 91 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -108.75 _pdbx_validate_torsion.psi 40.05 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8W35 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'FLEXIBLE FIT' # _em_3d_reconstruction.entry_id 8W35 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details 'BLUSH regularisation used during refinement' _em_3d_reconstruction.resolution 2.61 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 301832 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages 1 _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.4 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name ;Anti-CRISPR associated (Aca) protein, Aca2 bound to its 5'UTR RNA (IR2 and IR-RBS) ; _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list '1, 2' # _em_imaging.entry_id 8W35 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 1500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 165000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 300 _em_sample_support.grid_type Quantifoil _em_sample_support.details '25 mA plasma' _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8W35 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 285 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8W35 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 8W35 _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -3 ? A SER 1 2 1 Y 1 A HIS -2 ? A HIS 2 3 1 Y 1 A GLY -1 ? A GLY 3 4 1 Y 1 B SER -3 ? B SER 1 5 1 Y 1 B HIS -2 ? B HIS 2 6 1 Y 1 B GLY -1 ? B GLY 3 7 1 Y 1 C A 30 ? C A 30 8 1 Y 1 C A 31 ? C A 31 9 1 Y 1 C C 32 ? C C 32 10 1 Y 1 C U 38 ? C U 38 11 1 Y 1 C U 39 ? C U 39 12 1 Y 1 C C 40 ? C C 40 13 1 Y 1 C C 41 ? C C 41 14 1 Y 1 C A 42 ? C A 42 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 G OP3 O N N 146 G P P N N 147 G OP1 O N N 148 G OP2 O N N 149 G "O5'" O N N 150 G "C5'" C N N 151 G "C4'" C N R 152 G "O4'" O N N 153 G "C3'" C N S 154 G "O3'" O N N 155 G "C2'" C N R 156 G "O2'" O N N 157 G "C1'" C N R 158 G N9 N Y N 159 G C8 C Y N 160 G N7 N Y N 161 G C5 C Y N 162 G C6 C N N 163 G O6 O N N 164 G N1 N N N 165 G C2 C N N 166 G N2 N N N 167 G N3 N N N 168 G C4 C Y N 169 G HOP3 H N N 170 G HOP2 H N N 171 G "H5'" H N N 172 G "H5''" H N N 173 G "H4'" H N N 174 G "H3'" H N N 175 G "HO3'" H N N 176 G "H2'" H N N 177 G "HO2'" H N N 178 G "H1'" H N N 179 G H8 H N N 180 G H1 H N N 181 G H21 H N N 182 G H22 H N N 183 GLN N N N N 184 GLN CA C N S 185 GLN C C N N 186 GLN O O N N 187 GLN CB C N N 188 GLN CG C N N 189 GLN CD C N N 190 GLN OE1 O N N 191 GLN NE2 N N N 192 GLN OXT O N N 193 GLN H H N N 194 GLN H2 H N N 195 GLN HA H N N 196 GLN HB2 H N N 197 GLN HB3 H N N 198 GLN HG2 H N N 199 GLN HG3 H N N 200 GLN HE21 H N N 201 GLN HE22 H N N 202 GLN HXT H N N 203 GLU N N N N 204 GLU CA C N S 205 GLU C C N N 206 GLU O O N N 207 GLU CB C N N 208 GLU CG C N N 209 GLU CD C N N 210 GLU OE1 O N N 211 GLU OE2 O N N 212 GLU OXT O N N 213 GLU H H N N 214 GLU H2 H N N 215 GLU HA H N N 216 GLU HB2 H N N 217 GLU HB3 H N N 218 GLU HG2 H N N 219 GLU HG3 H N N 220 GLU HE2 H N N 221 GLU HXT H N N 222 GLY N N N N 223 GLY CA C N N 224 GLY C C N N 225 GLY O O N N 226 GLY OXT O N N 227 GLY H H N N 228 GLY H2 H N N 229 GLY HA2 H N N 230 GLY HA3 H N N 231 GLY HXT H N N 232 HIS N N N N 233 HIS CA C N S 234 HIS C C N N 235 HIS O O N N 236 HIS CB C N N 237 HIS CG C Y N 238 HIS ND1 N Y N 239 HIS CD2 C Y N 240 HIS CE1 C Y N 241 HIS NE2 N Y N 242 HIS OXT O N N 243 HIS H H N N 244 HIS H2 H N N 245 HIS HA H N N 246 HIS HB2 H N N 247 HIS HB3 H N N 248 HIS HD1 H N N 249 HIS HD2 H N N 250 HIS HE1 H N N 251 HIS HE2 H N N 252 HIS HXT H N N 253 ILE N N N N 254 ILE CA C N S 255 ILE C C N N 256 ILE O O N N 257 ILE CB C N S 258 ILE CG1 C N N 259 ILE CG2 C N N 260 ILE CD1 C N N 261 ILE OXT O N N 262 ILE H H N N 263 ILE H2 H N N 264 ILE HA H N N 265 ILE HB H N N 266 ILE HG12 H N N 267 ILE HG13 H N N 268 ILE HG21 H N N 269 ILE HG22 H N N 270 ILE HG23 H N N 271 ILE HD11 H N N 272 ILE HD12 H N N 273 ILE HD13 H N N 274 ILE HXT H N N 275 LEU N N N N 276 LEU CA C N S 277 LEU C C N N 278 LEU O O N N 279 LEU CB C N N 280 LEU CG C N N 281 LEU CD1 C N N 282 LEU CD2 C N N 283 LEU OXT O N N 284 LEU H H N N 285 LEU H2 H N N 286 LEU HA H N N 287 LEU HB2 H N N 288 LEU HB3 H N N 289 LEU HG H N N 290 LEU HD11 H N N 291 LEU HD12 H N N 292 LEU HD13 H N N 293 LEU HD21 H N N 294 LEU HD22 H N N 295 LEU HD23 H N N 296 LEU HXT H N N 297 LYS N N N N 298 LYS CA C N S 299 LYS C C N N 300 LYS O O N N 301 LYS CB C N N 302 LYS CG C N N 303 LYS CD C N N 304 LYS CE C N N 305 LYS NZ N N N 306 LYS OXT O N N 307 LYS H H N N 308 LYS H2 H N N 309 LYS HA H N N 310 LYS HB2 H N N 311 LYS HB3 H N N 312 LYS HG2 H N N 313 LYS HG3 H N N 314 LYS HD2 H N N 315 LYS HD3 H N N 316 LYS HE2 H N N 317 LYS HE3 H N N 318 LYS HZ1 H N N 319 LYS HZ2 H N N 320 LYS HZ3 H N N 321 LYS HXT H N N 322 MET N N N N 323 MET CA C N S 324 MET C C N N 325 MET O O N N 326 MET CB C N N 327 MET CG C N N 328 MET SD S N N 329 MET CE C N N 330 MET OXT O N N 331 MET H H N N 332 MET H2 H N N 333 MET HA H N N 334 MET HB2 H N N 335 MET HB3 H N N 336 MET HG2 H N N 337 MET HG3 H N N 338 MET HE1 H N N 339 MET HE2 H N N 340 MET HE3 H N N 341 MET HXT H N N 342 PHE N N N N 343 PHE CA C N S 344 PHE C C N N 345 PHE O O N N 346 PHE CB C N N 347 PHE CG C Y N 348 PHE CD1 C Y N 349 PHE CD2 C Y N 350 PHE CE1 C Y N 351 PHE CE2 C Y N 352 PHE CZ C Y N 353 PHE OXT O N N 354 PHE H H N N 355 PHE H2 H N N 356 PHE HA H N N 357 PHE HB2 H N N 358 PHE HB3 H N N 359 PHE HD1 H N N 360 PHE HD2 H N N 361 PHE HE1 H N N 362 PHE HE2 H N N 363 PHE HZ H N N 364 PHE HXT H N N 365 PRO N N N N 366 PRO CA C N S 367 PRO C C N N 368 PRO O O N N 369 PRO CB C N N 370 PRO CG C N N 371 PRO CD C N N 372 PRO OXT O N N 373 PRO H H N N 374 PRO HA H N N 375 PRO HB2 H N N 376 PRO HB3 H N N 377 PRO HG2 H N N 378 PRO HG3 H N N 379 PRO HD2 H N N 380 PRO HD3 H N N 381 PRO HXT H N N 382 SER N N N N 383 SER CA C N S 384 SER C C N N 385 SER O O N N 386 SER CB C N N 387 SER OG O N N 388 SER OXT O N N 389 SER H H N N 390 SER H2 H N N 391 SER HA H N N 392 SER HB2 H N N 393 SER HB3 H N N 394 SER HG H N N 395 SER HXT H N N 396 THR N N N N 397 THR CA C N S 398 THR C C N N 399 THR O O N N 400 THR CB C N R 401 THR OG1 O N N 402 THR CG2 C N N 403 THR OXT O N N 404 THR H H N N 405 THR H2 H N N 406 THR HA H N N 407 THR HB H N N 408 THR HG1 H N N 409 THR HG21 H N N 410 THR HG22 H N N 411 THR HG23 H N N 412 THR HXT H N N 413 TRP N N N N 414 TRP CA C N S 415 TRP C C N N 416 TRP O O N N 417 TRP CB C N N 418 TRP CG C Y N 419 TRP CD1 C Y N 420 TRP CD2 C Y N 421 TRP NE1 N Y N 422 TRP CE2 C Y N 423 TRP CE3 C Y N 424 TRP CZ2 C Y N 425 TRP CZ3 C Y N 426 TRP CH2 C Y N 427 TRP OXT O N N 428 TRP H H N N 429 TRP H2 H N N 430 TRP HA H N N 431 TRP HB2 H N N 432 TRP HB3 H N N 433 TRP HD1 H N N 434 TRP HE1 H N N 435 TRP HE3 H N N 436 TRP HZ2 H N N 437 TRP HZ3 H N N 438 TRP HH2 H N N 439 TRP HXT H N N 440 TYR N N N N 441 TYR CA C N S 442 TYR C C N N 443 TYR O O N N 444 TYR CB C N N 445 TYR CG C Y N 446 TYR CD1 C Y N 447 TYR CD2 C Y N 448 TYR CE1 C Y N 449 TYR CE2 C Y N 450 TYR CZ C Y N 451 TYR OH O N N 452 TYR OXT O N N 453 TYR H H N N 454 TYR H2 H N N 455 TYR HA H N N 456 TYR HB2 H N N 457 TYR HB3 H N N 458 TYR HD1 H N N 459 TYR HD2 H N N 460 TYR HE1 H N N 461 TYR HE2 H N N 462 TYR HH H N N 463 TYR HXT H N N 464 U OP3 O N N 465 U P P N N 466 U OP1 O N N 467 U OP2 O N N 468 U "O5'" O N N 469 U "C5'" C N N 470 U "C4'" C N R 471 U "O4'" O N N 472 U "C3'" C N S 473 U "O3'" O N N 474 U "C2'" C N R 475 U "O2'" O N N 476 U "C1'" C N R 477 U N1 N N N 478 U C2 C N N 479 U O2 O N N 480 U N3 N N N 481 U C4 C N N 482 U O4 O N N 483 U C5 C N N 484 U C6 C N N 485 U HOP3 H N N 486 U HOP2 H N N 487 U "H5'" H N N 488 U "H5''" H N N 489 U "H4'" H N N 490 U "H3'" H N N 491 U "HO3'" H N N 492 U "H2'" H N N 493 U "HO2'" H N N 494 U "H1'" H N N 495 U H3 H N N 496 U H5 H N N 497 U H6 H N N 498 VAL N N N N 499 VAL CA C N S 500 VAL C C N N 501 VAL O O N N 502 VAL CB C N N 503 VAL CG1 C N N 504 VAL CG2 C N N 505 VAL OXT O N N 506 VAL H H N N 507 VAL H2 H N N 508 VAL HA H N N 509 VAL HB H N N 510 VAL HG11 H N N 511 VAL HG12 H N N 512 VAL HG13 H N N 513 VAL HG21 H N N 514 VAL HG22 H N N 515 VAL HG23 H N N 516 VAL HXT H N N 517 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 G OP3 P sing N N 145 G OP3 HOP3 sing N N 146 G P OP1 doub N N 147 G P OP2 sing N N 148 G P "O5'" sing N N 149 G OP2 HOP2 sing N N 150 G "O5'" "C5'" sing N N 151 G "C5'" "C4'" sing N N 152 G "C5'" "H5'" sing N N 153 G "C5'" "H5''" sing N N 154 G "C4'" "O4'" sing N N 155 G "C4'" "C3'" sing N N 156 G "C4'" "H4'" sing N N 157 G "O4'" "C1'" sing N N 158 G "C3'" "O3'" sing N N 159 G "C3'" "C2'" sing N N 160 G "C3'" "H3'" sing N N 161 G "O3'" "HO3'" sing N N 162 G "C2'" "O2'" sing N N 163 G "C2'" "C1'" sing N N 164 G "C2'" "H2'" sing N N 165 G "O2'" "HO2'" sing N N 166 G "C1'" N9 sing N N 167 G "C1'" "H1'" sing N N 168 G N9 C8 sing Y N 169 G N9 C4 sing Y N 170 G C8 N7 doub Y N 171 G C8 H8 sing N N 172 G N7 C5 sing Y N 173 G C5 C6 sing N N 174 G C5 C4 doub Y N 175 G C6 O6 doub N N 176 G C6 N1 sing N N 177 G N1 C2 sing N N 178 G N1 H1 sing N N 179 G C2 N2 sing N N 180 G C2 N3 doub N N 181 G N2 H21 sing N N 182 G N2 H22 sing N N 183 G N3 C4 sing N N 184 GLN N CA sing N N 185 GLN N H sing N N 186 GLN N H2 sing N N 187 GLN CA C sing N N 188 GLN CA CB sing N N 189 GLN CA HA sing N N 190 GLN C O doub N N 191 GLN C OXT sing N N 192 GLN CB CG sing N N 193 GLN CB HB2 sing N N 194 GLN CB HB3 sing N N 195 GLN CG CD sing N N 196 GLN CG HG2 sing N N 197 GLN CG HG3 sing N N 198 GLN CD OE1 doub N N 199 GLN CD NE2 sing N N 200 GLN NE2 HE21 sing N N 201 GLN NE2 HE22 sing N N 202 GLN OXT HXT sing N N 203 GLU N CA sing N N 204 GLU N H sing N N 205 GLU N H2 sing N N 206 GLU CA C sing N N 207 GLU CA CB sing N N 208 GLU CA HA sing N N 209 GLU C O doub N N 210 GLU C OXT sing N N 211 GLU CB CG sing N N 212 GLU CB HB2 sing N N 213 GLU CB HB3 sing N N 214 GLU CG CD sing N N 215 GLU CG HG2 sing N N 216 GLU CG HG3 sing N N 217 GLU CD OE1 doub N N 218 GLU CD OE2 sing N N 219 GLU OE2 HE2 sing N N 220 GLU OXT HXT sing N N 221 GLY N CA sing N N 222 GLY N H sing N N 223 GLY N H2 sing N N 224 GLY CA C sing N N 225 GLY CA HA2 sing N N 226 GLY CA HA3 sing N N 227 GLY C O doub N N 228 GLY C OXT sing N N 229 GLY OXT HXT sing N N 230 HIS N CA sing N N 231 HIS N H sing N N 232 HIS N H2 sing N N 233 HIS CA C sing N N 234 HIS CA CB sing N N 235 HIS CA HA sing N N 236 HIS C O doub N N 237 HIS C OXT sing N N 238 HIS CB CG sing N N 239 HIS CB HB2 sing N N 240 HIS CB HB3 sing N N 241 HIS CG ND1 sing Y N 242 HIS CG CD2 doub Y N 243 HIS ND1 CE1 doub Y N 244 HIS ND1 HD1 sing N N 245 HIS CD2 NE2 sing Y N 246 HIS CD2 HD2 sing N N 247 HIS CE1 NE2 sing Y N 248 HIS CE1 HE1 sing N N 249 HIS NE2 HE2 sing N N 250 HIS OXT HXT sing N N 251 ILE N CA sing N N 252 ILE N H sing N N 253 ILE N H2 sing N N 254 ILE CA C sing N N 255 ILE CA CB sing N N 256 ILE CA HA sing N N 257 ILE C O doub N N 258 ILE C OXT sing N N 259 ILE CB CG1 sing N N 260 ILE CB CG2 sing N N 261 ILE CB HB sing N N 262 ILE CG1 CD1 sing N N 263 ILE CG1 HG12 sing N N 264 ILE CG1 HG13 sing N N 265 ILE CG2 HG21 sing N N 266 ILE CG2 HG22 sing N N 267 ILE CG2 HG23 sing N N 268 ILE CD1 HD11 sing N N 269 ILE CD1 HD12 sing N N 270 ILE CD1 HD13 sing N N 271 ILE OXT HXT sing N N 272 LEU N CA sing N N 273 LEU N H sing N N 274 LEU N H2 sing N N 275 LEU CA C sing N N 276 LEU CA CB sing N N 277 LEU CA HA sing N N 278 LEU C O doub N N 279 LEU C OXT sing N N 280 LEU CB CG sing N N 281 LEU CB HB2 sing N N 282 LEU CB HB3 sing N N 283 LEU CG CD1 sing N N 284 LEU CG CD2 sing N N 285 LEU CG HG sing N N 286 LEU CD1 HD11 sing N N 287 LEU CD1 HD12 sing N N 288 LEU CD1 HD13 sing N N 289 LEU CD2 HD21 sing N N 290 LEU CD2 HD22 sing N N 291 LEU CD2 HD23 sing N N 292 LEU OXT HXT sing N N 293 LYS N CA sing N N 294 LYS N H sing N N 295 LYS N H2 sing N N 296 LYS CA C sing N N 297 LYS CA CB sing N N 298 LYS CA HA sing N N 299 LYS C O doub N N 300 LYS C OXT sing N N 301 LYS CB CG sing N N 302 LYS CB HB2 sing N N 303 LYS CB HB3 sing N N 304 LYS CG CD sing N N 305 LYS CG HG2 sing N N 306 LYS CG HG3 sing N N 307 LYS CD CE sing N N 308 LYS CD HD2 sing N N 309 LYS CD HD3 sing N N 310 LYS CE NZ sing N N 311 LYS CE HE2 sing N N 312 LYS CE HE3 sing N N 313 LYS NZ HZ1 sing N N 314 LYS NZ HZ2 sing N N 315 LYS NZ HZ3 sing N N 316 LYS OXT HXT sing N N 317 MET N CA sing N N 318 MET N H sing N N 319 MET N H2 sing N N 320 MET CA C sing N N 321 MET CA CB sing N N 322 MET CA HA sing N N 323 MET C O doub N N 324 MET C OXT sing N N 325 MET CB CG sing N N 326 MET CB HB2 sing N N 327 MET CB HB3 sing N N 328 MET CG SD sing N N 329 MET CG HG2 sing N N 330 MET CG HG3 sing N N 331 MET SD CE sing N N 332 MET CE HE1 sing N N 333 MET CE HE2 sing N N 334 MET CE HE3 sing N N 335 MET OXT HXT sing N N 336 PHE N CA sing N N 337 PHE N H sing N N 338 PHE N H2 sing N N 339 PHE CA C sing N N 340 PHE CA CB sing N N 341 PHE CA HA sing N N 342 PHE C O doub N N 343 PHE C OXT sing N N 344 PHE CB CG sing N N 345 PHE CB HB2 sing N N 346 PHE CB HB3 sing N N 347 PHE CG CD1 doub Y N 348 PHE CG CD2 sing Y N 349 PHE CD1 CE1 sing Y N 350 PHE CD1 HD1 sing N N 351 PHE CD2 CE2 doub Y N 352 PHE CD2 HD2 sing N N 353 PHE CE1 CZ doub Y N 354 PHE CE1 HE1 sing N N 355 PHE CE2 CZ sing Y N 356 PHE CE2 HE2 sing N N 357 PHE CZ HZ sing N N 358 PHE OXT HXT sing N N 359 PRO N CA sing N N 360 PRO N CD sing N N 361 PRO N H sing N N 362 PRO CA C sing N N 363 PRO CA CB sing N N 364 PRO CA HA sing N N 365 PRO C O doub N N 366 PRO C OXT sing N N 367 PRO CB CG sing N N 368 PRO CB HB2 sing N N 369 PRO CB HB3 sing N N 370 PRO CG CD sing N N 371 PRO CG HG2 sing N N 372 PRO CG HG3 sing N N 373 PRO CD HD2 sing N N 374 PRO CD HD3 sing N N 375 PRO OXT HXT sing N N 376 SER N CA sing N N 377 SER N H sing N N 378 SER N H2 sing N N 379 SER CA C sing N N 380 SER CA CB sing N N 381 SER CA HA sing N N 382 SER C O doub N N 383 SER C OXT sing N N 384 SER CB OG sing N N 385 SER CB HB2 sing N N 386 SER CB HB3 sing N N 387 SER OG HG sing N N 388 SER OXT HXT sing N N 389 THR N CA sing N N 390 THR N H sing N N 391 THR N H2 sing N N 392 THR CA C sing N N 393 THR CA CB sing N N 394 THR CA HA sing N N 395 THR C O doub N N 396 THR C OXT sing N N 397 THR CB OG1 sing N N 398 THR CB CG2 sing N N 399 THR CB HB sing N N 400 THR OG1 HG1 sing N N 401 THR CG2 HG21 sing N N 402 THR CG2 HG22 sing N N 403 THR CG2 HG23 sing N N 404 THR OXT HXT sing N N 405 TRP N CA sing N N 406 TRP N H sing N N 407 TRP N H2 sing N N 408 TRP CA C sing N N 409 TRP CA CB sing N N 410 TRP CA HA sing N N 411 TRP C O doub N N 412 TRP C OXT sing N N 413 TRP CB CG sing N N 414 TRP CB HB2 sing N N 415 TRP CB HB3 sing N N 416 TRP CG CD1 doub Y N 417 TRP CG CD2 sing Y N 418 TRP CD1 NE1 sing Y N 419 TRP CD1 HD1 sing N N 420 TRP CD2 CE2 doub Y N 421 TRP CD2 CE3 sing Y N 422 TRP NE1 CE2 sing Y N 423 TRP NE1 HE1 sing N N 424 TRP CE2 CZ2 sing Y N 425 TRP CE3 CZ3 doub Y N 426 TRP CE3 HE3 sing N N 427 TRP CZ2 CH2 doub Y N 428 TRP CZ2 HZ2 sing N N 429 TRP CZ3 CH2 sing Y N 430 TRP CZ3 HZ3 sing N N 431 TRP CH2 HH2 sing N N 432 TRP OXT HXT sing N N 433 TYR N CA sing N N 434 TYR N H sing N N 435 TYR N H2 sing N N 436 TYR CA C sing N N 437 TYR CA CB sing N N 438 TYR CA HA sing N N 439 TYR C O doub N N 440 TYR C OXT sing N N 441 TYR CB CG sing N N 442 TYR CB HB2 sing N N 443 TYR CB HB3 sing N N 444 TYR CG CD1 doub Y N 445 TYR CG CD2 sing Y N 446 TYR CD1 CE1 sing Y N 447 TYR CD1 HD1 sing N N 448 TYR CD2 CE2 doub Y N 449 TYR CD2 HD2 sing N N 450 TYR CE1 CZ doub Y N 451 TYR CE1 HE1 sing N N 452 TYR CE2 CZ sing Y N 453 TYR CE2 HE2 sing N N 454 TYR CZ OH sing N N 455 TYR OH HH sing N N 456 TYR OXT HXT sing N N 457 U OP3 P sing N N 458 U OP3 HOP3 sing N N 459 U P OP1 doub N N 460 U P OP2 sing N N 461 U P "O5'" sing N N 462 U OP2 HOP2 sing N N 463 U "O5'" "C5'" sing N N 464 U "C5'" "C4'" sing N N 465 U "C5'" "H5'" sing N N 466 U "C5'" "H5''" sing N N 467 U "C4'" "O4'" sing N N 468 U "C4'" "C3'" sing N N 469 U "C4'" "H4'" sing N N 470 U "O4'" "C1'" sing N N 471 U "C3'" "O3'" sing N N 472 U "C3'" "C2'" sing N N 473 U "C3'" "H3'" sing N N 474 U "O3'" "HO3'" sing N N 475 U "C2'" "O2'" sing N N 476 U "C2'" "C1'" sing N N 477 U "C2'" "H2'" sing N N 478 U "O2'" "HO2'" sing N N 479 U "C1'" N1 sing N N 480 U "C1'" "H1'" sing N N 481 U N1 C2 sing N N 482 U N1 C6 sing N N 483 U C2 O2 doub N N 484 U C2 N3 sing N N 485 U N3 C4 sing N N 486 U N3 H3 sing N N 487 U C4 O4 doub N N 488 U C4 C5 sing N N 489 U C5 C6 doub N N 490 U C5 H5 sing N N 491 U C6 H6 sing N N 492 VAL N CA sing N N 493 VAL N H sing N N 494 VAL N H2 sing N N 495 VAL CA C sing N N 496 VAL CA CB sing N N 497 VAL CA HA sing N N 498 VAL C O doub N N 499 VAL C OXT sing N N 500 VAL CB CG1 sing N N 501 VAL CB CG2 sing N N 502 VAL CB HB sing N N 503 VAL CG1 HG11 sing N N 504 VAL CG1 HG12 sing N N 505 VAL CG1 HG13 sing N N 506 VAL CG2 HG21 sing N N 507 VAL CG2 HG22 sing N N 508 VAL CG2 HG23 sing N N 509 VAL OXT HXT sing N N 510 # _em_admin.current_status REL _em_admin.deposition_date 2024-02-21 _em_admin.deposition_site RCSB _em_admin.entry_id 8W35 _em_admin.last_update 2024-08-14 _em_admin.map_release_date 2024-07-24 _em_admin.title 'Aca2 from Pectobacterium phage ZF40 bound to RNA' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 19 mM ? 1 'Tris-HCl pH 7.4' 1 86 mM NaCl 2 'sodium chloride' 1 5 mM MgCl2 3 'magnesium chloride' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units MEGADALTONS _em_entity_assembly_molwt.value 0.0395 # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 1127516 _em_entity_assembly_naturalsource.organism 'Pectobacterium phage ZF40' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.33 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 72.2 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 BIOQUANTUM (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 11232 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 6449886 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Topaz ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4.1 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? ISOLDE ? 'MODEL FITTING' ? 8 ? 1 ? Coot ? OTHER ? 9 ? ? ? ? ? 'MODEL REFINEMENT' ? 10 ? 1 ? PHENIX ? 'INITIAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 12 1 ? ? RELION 4.0 CLASSIFICATION ? 13 1 ? ? RELION 5.0 RECONSTRUCTION ? 14 1 ? ? RELION 5.0 # _em_specimen.concentration 5.1 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _ndb_struct_conf_na.entry_id 8W35 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C C 3 1_555 C G 24 1_555 0.136 -0.187 0.643 8.295 -5.723 -0.869 1 C_C3:G24_C C 3 ? C 24 ? 19 1 1 C G 4 1_555 C C 23 1_555 -0.213 -0.132 -0.104 -0.942 -7.619 -0.717 2 C_G4:C23_C C 4 ? C 23 ? 19 1 1 C G 5 1_555 C U 22 1_555 -2.263 -0.272 -0.198 -2.985 -4.509 0.406 3 C_G5:U22_C C 5 ? C 22 ? 28 1 1 C U 6 1_555 C A 21 1_555 0.002 0.002 0.212 0.424 -1.804 -3.106 4 C_U6:A21_C C 6 ? C 21 ? 20 1 1 C U 7 1_555 C A 20 1_555 0.008 0.010 0.112 4.330 0.535 1.388 5 C_U7:A20_C C 7 ? C 20 ? 20 1 1 C C 8 1_555 C G 19 1_555 0.139 -0.088 -0.083 4.718 -7.026 3.231 6 C_C8:G19_C C 8 ? C 19 ? 19 1 1 C G 9 1_555 C C 18 1_555 -0.088 -0.088 -0.226 -10.111 -2.109 -2.955 7 C_G9:C18_C C 9 ? C 18 ? 19 1 1 C A 10 1_555 C U 17 1_555 0.089 -0.009 -0.206 -5.453 -0.258 -4.426 8 C_A10:U17_C C 10 ? C 17 ? 20 1 1 C G 11 1_555 C C 16 1_555 -0.199 -0.087 -0.569 -3.272 -4.894 3.783 9 C_G11:C16_C C 11 ? C 16 ? 19 1 1 C U 26 1_555 C A 37 1_555 0.073 1.003 -0.596 26.700 6.023 -19.377 10 C_U26:A37_C C 26 ? C 37 ? ? ? 1 C C 27 1_555 C G 36 1_555 0.073 -0.116 0.570 -2.226 -11.925 -0.567 11 C_C27:G36_C C 27 ? C 36 ? 19 1 1 C C 28 1_555 C G 35 1_555 0.096 -0.129 0.599 1.309 -1.344 0.189 12 C_C28:G35_C C 28 ? C 35 ? 19 1 1 C U 29 1_555 C A 34 1_555 -0.053 -0.042 0.353 4.918 0.154 3.085 13 C_U29:A34_C C 29 ? C 34 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C C 3 1_555 C G 24 1_555 C G 4 1_555 C C 23 1_555 -0.959 -2.587 3.252 2.330 8.657 27.182 -6.932 2.398 2.249 17.815 -4.795 28.595 1 CC_C3G4:C23G24_CC C 3 ? C 24 ? C 4 ? C 23 ? 1 C G 4 1_555 C C 23 1_555 C G 5 1_555 C U 22 1_555 -0.039 -1.997 3.354 -1.703 3.524 25.610 -5.417 -0.377 3.052 7.892 3.813 25.902 2 CC_G4G5:U22C23_CC C 4 ? C 23 ? C 5 ? C 22 ? 1 C G 5 1_555 C U 22 1_555 C U 6 1_555 C A 21 1_555 -0.380 -1.273 3.289 -3.964 4.236 40.808 -2.263 0.115 3.169 6.038 5.650 41.201 3 CC_G5U6:A21U22_CC C 5 ? C 22 ? C 6 ? C 21 ? 1 C U 6 1_555 C A 21 1_555 C U 7 1_555 C A 20 1_555 0.658 -1.652 3.363 2.396 1.733 30.764 -3.444 -0.760 3.308 3.257 -4.504 30.902 4 CC_U6U7:A20A21_CC C 6 ? C 21 ? C 7 ? C 20 ? 1 C U 7 1_555 C A 20 1_555 C C 8 1_555 C G 19 1_555 0.794 -2.218 3.197 3.687 6.407 28.316 -5.670 -0.837 2.719 12.823 -7.378 29.246 5 CC_U7C8:G19A20_CC C 7 ? C 20 ? C 8 ? C 19 ? 1 C C 8 1_555 C G 19 1_555 C G 9 1_555 C C 18 1_555 -1.732 -2.447 3.695 -5.567 9.015 28.319 -6.654 2.115 3.067 17.664 10.908 30.198 6 CC_C8G9:C18G19_CC C 8 ? C 19 ? C 9 ? C 18 ? 1 C G 9 1_555 C C 18 1_555 C A 10 1_555 C U 17 1_555 -0.906 -1.678 3.445 -5.036 4.578 28.430 -4.358 0.661 3.250 9.157 10.073 29.217 7 CC_G9A10:U17C18_CC C 9 ? C 18 ? C 10 ? C 17 ? 1 C A 10 1_555 C U 17 1_555 C G 11 1_555 C C 16 1_555 0.101 -1.396 3.484 -2.362 7.889 28.724 -4.363 -0.692 2.986 15.504 4.641 29.857 8 CC_A10G11:C16U17_CC C 10 ? C 17 ? C 11 ? C 16 ? 1 C U 26 1_555 C A 37 1_555 C C 27 1_555 C G 36 1_555 1.065 -2.135 3.981 -6.087 37.205 40.974 -4.492 -1.508 1.520 43.707 7.151 55.124 9 CC_U26C27:G36A37_CC C 26 ? C 37 ? C 27 ? C 36 ? 1 C C 27 1_555 C G 36 1_555 C C 28 1_555 C G 35 1_555 -0.593 -2.184 3.595 -6.466 -4.890 28.844 -3.041 -0.422 3.940 -9.581 12.667 29.938 10 CC_C27C28:G35G36_CC C 27 ? C 36 ? C 28 ? C 35 ? 1 C C 28 1_555 C G 35 1_555 C U 29 1_555 C A 34 1_555 0.056 -1.618 3.486 0.298 2.173 28.386 -3.811 -0.043 3.355 4.423 -0.606 28.469 11 CC_C28U29:A34G35_CC C 28 ? C 35 ? C 29 ? C 34 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 1 'Other government' 'New Zealand' ? 2 'Alexander von Humboldt Foundation' Germany ? 3 # _atom_sites.entry_id 8W35 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_