HEADER IMMUNE SYSTEM 26-AUG-23 8W5H TITLE CRYO-EM STRUCTURE OF QB-AB10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MINOR CAPSID PROTEIN A1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: QB COAT PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: HEAVY CHAIN OF AB10; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: LIGHT CHAIN OF AB10; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE QBETA; SOURCE 3 ORGANISM_TAXID: 2789016; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS QB, ANTIBODY, CRYO-EM, IMMUNE SYSTEM EXPDTA ELECTRON MICROSCOPY AUTHOR K.Y.BAO,R.H.LI,Z.L.HUA,B.D.HOU,P.ZHU REVDAT 1 26-FEB-25 8W5H 0 JRNL AUTH R.LI,K.BAO,C.LIU,X.MA,Z.HUA,P.ZHU,B.HOU JRNL TITL COMPETITION PROPELS, RATHER THAN LIMITS, THE SUCCESS OF JRNL TITL 2 LOW-AFFINITY B CELLS IN THE GERMINAL CENTER RESPONSE. JRNL REF CELL REP V. 44 15334 2025 JRNL REFN ESSN 2211-1247 JRNL PMID 39955776 JRNL DOI 10.1016/J.CELREP.2025.115334 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.800 REMARK 3 NUMBER OF PARTICLES : 24438 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8W5H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-23. REMARK 100 THE DEPOSITION ID IS D_1300040598. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF QB-AB10 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.309017 -0.809017 0.500000 272.00000 REMARK 350 BIOMT2 2 0.809017 0.500000 0.309017 -168.10524 REMARK 350 BIOMT3 2 -0.500000 0.309017 0.809017 103.89476 REMARK 350 BIOMT1 3 -0.809017 -0.500000 0.309017 544.00000 REMARK 350 BIOMT2 3 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 3 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.809017 0.500000 -0.309017 440.10524 REMARK 350 BIOMT2 4 -0.500000 -0.309017 0.809017 272.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 0.500000 -168.10524 REMARK 350 BIOMT1 5 0.309017 0.809017 -0.500000 103.89476 REMARK 350 BIOMT2 5 -0.809017 0.500000 0.309017 272.00000 REMARK 350 BIOMT3 5 0.500000 0.309017 0.809017 -168.10524 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 544.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 544.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.309017 0.809017 -0.500000 272.00000 REMARK 350 BIOMT2 7 -0.809017 -0.500000 -0.309017 712.10524 REMARK 350 BIOMT3 7 -0.500000 0.309017 0.809017 103.89476 REMARK 350 BIOMT1 8 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.309017 -0.809017 544.00000 REMARK 350 BIOMT3 8 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.809017 -0.500000 0.309017 103.89476 REMARK 350 BIOMT2 9 0.500000 0.309017 -0.809017 272.00000 REMARK 350 BIOMT3 9 0.309017 0.809017 0.500000 -168.10524 REMARK 350 BIOMT1 10 -0.309017 -0.809017 0.500000 440.10524 REMARK 350 BIOMT2 10 0.809017 -0.500000 -0.309017 272.00000 REMARK 350 BIOMT3 10 0.500000 0.309017 0.809017 -168.10524 REMARK 350 BIOMT1 11 -1.000000 0.000000 0.000000 544.00000 REMARK 350 BIOMT2 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 544.00000 REMARK 350 BIOMT1 12 -0.309017 0.809017 -0.500000 272.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 0.309017 -168.10524 REMARK 350 BIOMT3 12 0.500000 -0.309017 -0.809017 440.10524 REMARK 350 BIOMT1 13 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 13 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 13 0.309017 -0.809017 -0.500000 544.00000 REMARK 350 BIOMT1 14 0.809017 -0.500000 0.309017 103.89476 REMARK 350 BIOMT2 14 -0.500000 -0.309017 0.809017 272.00000 REMARK 350 BIOMT3 14 -0.309017 -0.809017 -0.500000 712.10524 REMARK 350 BIOMT1 15 -0.309017 -0.809017 0.500000 440.10524 REMARK 350 BIOMT2 15 -0.809017 0.500000 0.309017 272.00000 REMARK 350 BIOMT3 15 -0.500000 -0.309017 -0.809017 712.10524 REMARK 350 BIOMT1 16 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 -1.000000 0.000000 544.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 544.00000 REMARK 350 BIOMT1 17 0.309017 -0.809017 0.500000 272.00000 REMARK 350 BIOMT2 17 -0.809017 -0.500000 -0.309017 712.10524 REMARK 350 BIOMT3 17 0.500000 -0.309017 -0.809017 440.10524 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 544.00000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 544.00000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 544.00000 REMARK 350 BIOMT1 19 -0.809017 0.500000 -0.309017 440.10524 REMARK 350 BIOMT2 19 0.500000 0.309017 -0.809017 272.00000 REMARK 350 BIOMT3 19 -0.309017 -0.809017 -0.500000 712.10524 REMARK 350 BIOMT1 20 0.309017 0.809017 -0.500000 103.89476 REMARK 350 BIOMT2 20 0.809017 -0.500000 -0.309017 272.00000 REMARK 350 BIOMT3 20 -0.500000 -0.309017 -0.809017 712.10524 REMARK 350 BIOMT1 21 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 21 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.500000 0.309017 0.809017 103.89476 REMARK 350 BIOMT2 22 0.309017 -0.809017 0.500000 272.00000 REMARK 350 BIOMT3 22 0.809017 0.500000 0.309017 -168.10524 REMARK 350 BIOMT1 23 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.500000 0.309017 544.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 24 0.309017 0.809017 0.500000 -168.10524 REMARK 350 BIOMT2 24 -0.809017 0.500000 -0.309017 440.10524 REMARK 350 BIOMT3 24 -0.500000 -0.309017 0.809017 272.00000 REMARK 350 BIOMT1 25 0.500000 0.309017 0.809017 -168.10524 REMARK 350 BIOMT2 25 0.309017 0.809017 -0.500000 103.89476 REMARK 350 BIOMT3 25 -0.809017 0.500000 0.309017 272.00000 REMARK 350 BIOMT1 26 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 26 -1.000000 0.000000 0.000000 544.00000 REMARK 350 BIOMT3 26 0.000000 -1.000000 0.000000 544.00000 REMARK 350 BIOMT1 27 -0.500000 0.309017 0.809017 103.89476 REMARK 350 BIOMT2 27 -0.309017 0.809017 -0.500000 272.00000 REMARK 350 BIOMT3 27 -0.809017 -0.500000 -0.309017 712.10524 REMARK 350 BIOMT1 28 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 28 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 28 -0.500000 0.309017 -0.809017 544.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 -168.10524 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 103.89476 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 272.00000 REMARK 350 BIOMT1 30 0.500000 0.309017 0.809017 -168.10524 REMARK 350 BIOMT2 30 -0.309017 -0.809017 0.500000 440.10524 REMARK 350 BIOMT3 30 0.809017 -0.500000 -0.309017 272.00000 REMARK 350 BIOMT1 31 0.000000 0.000000 -1.000000 544.00000 REMARK 350 BIOMT2 31 -1.000000 0.000000 0.000000 544.00000 REMARK 350 BIOMT3 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.500000 -0.309017 -0.809017 440.10524 REMARK 350 BIOMT2 32 -0.309017 0.809017 -0.500000 272.00000 REMARK 350 BIOMT3 32 0.809017 0.500000 0.309017 -168.10524 REMARK 350 BIOMT1 33 0.309017 -0.809017 -0.500000 544.00000 REMARK 350 BIOMT2 33 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.309017 -0.809017 -0.500000 712.10524 REMARK 350 BIOMT2 34 0.809017 -0.500000 0.309017 103.89476 REMARK 350 BIOMT3 34 -0.500000 -0.309017 0.809017 272.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 712.10524 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 440.10524 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 272.00000 REMARK 350 BIOMT1 36 0.000000 0.000000 -1.000000 544.00000 REMARK 350 BIOMT2 36 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 36 0.000000 -1.000000 0.000000 544.00000 REMARK 350 BIOMT1 37 0.500000 -0.309017 -0.809017 440.10524 REMARK 350 BIOMT2 37 0.309017 -0.809017 0.500000 272.00000 REMARK 350 BIOMT3 37 -0.809017 -0.500000 -0.309017 712.10524 REMARK 350 BIOMT1 38 0.309017 -0.809017 -0.500000 544.00000 REMARK 350 BIOMT2 38 -0.809017 -0.500000 0.309017 544.00000 REMARK 350 BIOMT3 38 -0.500000 0.309017 -0.809017 544.00000 REMARK 350 BIOMT1 39 -0.309017 -0.809017 -0.500000 712.10524 REMARK 350 BIOMT2 39 -0.809017 0.500000 -0.309017 440.10524 REMARK 350 BIOMT3 39 0.500000 0.309017 -0.809017 272.00000 REMARK 350 BIOMT1 40 -0.500000 -0.309017 -0.809017 712.10524 REMARK 350 BIOMT2 40 0.309017 0.809017 -0.500000 103.89476 REMARK 350 BIOMT3 40 0.809017 -0.500000 -0.309017 272.00000 REMARK 350 BIOMT1 41 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 41 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.809017 0.500000 0.309017 -168.10524 REMARK 350 BIOMT2 42 -0.500000 0.309017 0.809017 103.89476 REMARK 350 BIOMT3 42 0.309017 -0.809017 0.500000 272.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 43 -0.809017 -0.500000 0.309017 544.00000 REMARK 350 BIOMT1 44 -0.500000 -0.309017 0.809017 272.00000 REMARK 350 BIOMT2 44 0.309017 0.809017 0.500000 -168.10524 REMARK 350 BIOMT3 44 -0.809017 0.500000 -0.309017 440.10524 REMARK 350 BIOMT1 45 -0.809017 0.500000 0.309017 272.00000 REMARK 350 BIOMT2 45 0.500000 0.309017 0.809017 -168.10524 REMARK 350 BIOMT3 45 0.309017 0.809017 -0.500000 103.89476 REMARK 350 BIOMT1 46 0.000000 -1.000000 0.000000 544.00000 REMARK 350 BIOMT2 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 46 -1.000000 0.000000 0.000000 544.00000 REMARK 350 BIOMT1 47 -0.809017 -0.500000 -0.309017 712.10524 REMARK 350 BIOMT2 47 -0.500000 0.309017 0.809017 103.89476 REMARK 350 BIOMT3 47 -0.309017 0.809017 -0.500000 272.00000 REMARK 350 BIOMT1 48 -0.500000 0.309017 -0.809017 544.00000 REMARK 350 BIOMT2 48 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 48 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 -0.809017 272.00000 REMARK 350 BIOMT2 49 0.309017 0.809017 0.500000 -168.10524 REMARK 350 BIOMT3 49 0.809017 -0.500000 0.309017 103.89476 REMARK 350 BIOMT1 50 0.809017 -0.500000 -0.309017 272.00000 REMARK 350 BIOMT2 50 0.500000 0.309017 0.809017 -168.10524 REMARK 350 BIOMT3 50 -0.309017 -0.809017 0.500000 440.10524 REMARK 350 BIOMT1 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 51 0.000000 0.000000 -1.000000 544.00000 REMARK 350 BIOMT3 51 -1.000000 0.000000 0.000000 544.00000 REMARK 350 BIOMT1 52 0.809017 0.500000 0.309017 -168.10524 REMARK 350 BIOMT2 52 0.500000 -0.309017 -0.809017 440.10524 REMARK 350 BIOMT3 52 -0.309017 0.809017 -0.500000 272.00000 REMARK 350 BIOMT1 53 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 53 0.309017 -0.809017 -0.500000 544.00000 REMARK 350 BIOMT3 53 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.500000 -0.309017 0.809017 272.00000 REMARK 350 BIOMT2 54 -0.309017 -0.809017 -0.500000 712.10524 REMARK 350 BIOMT3 54 0.809017 -0.500000 0.309017 103.89476 REMARK 350 BIOMT1 55 -0.809017 0.500000 0.309017 272.00000 REMARK 350 BIOMT2 55 -0.500000 -0.309017 -0.809017 712.10524 REMARK 350 BIOMT3 55 -0.309017 -0.809017 0.500000 440.10524 REMARK 350 BIOMT1 56 0.000000 -1.000000 0.000000 544.00000 REMARK 350 BIOMT2 56 0.000000 0.000000 -1.000000 544.00000 REMARK 350 BIOMT3 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.809017 -0.500000 -0.309017 712.10524 REMARK 350 BIOMT2 57 0.500000 -0.309017 -0.809017 440.10524 REMARK 350 BIOMT3 57 0.309017 -0.809017 0.500000 272.00000 REMARK 350 BIOMT1 58 -0.500000 0.309017 -0.809017 544.00000 REMARK 350 BIOMT2 58 0.309017 -0.809017 -0.500000 544.00000 REMARK 350 BIOMT3 58 -0.809017 -0.500000 0.309017 544.00000 REMARK 350 BIOMT1 59 0.500000 0.309017 -0.809017 272.00000 REMARK 350 BIOMT2 59 -0.309017 -0.809017 -0.500000 712.10524 REMARK 350 BIOMT3 59 -0.809017 0.500000 -0.309017 440.10524 REMARK 350 BIOMT1 60 0.809017 -0.500000 -0.309017 272.00000 REMARK 350 BIOMT2 60 -0.500000 -0.309017 -0.809017 712.10524 REMARK 350 BIOMT3 60 0.309017 0.809017 -0.500000 103.89476 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 MET B 0 REMARK 465 MET C 0 REMARK 465 VAL H 1 REMARK 465 HIS H 2 REMARK 465 SER H 3 REMARK 465 THR H 123 REMARK 465 VAL H 124 REMARK 465 SER H 125 REMARK 465 SER H 126 REMARK 465 ALA H 127 REMARK 465 VAL L 1 REMARK 465 HIS L 2 REMARK 465 SER L 3 REMARK 465 ASP L 4 REMARK 465 GLU L 108 REMARK 465 ILE L 109 REMARK 465 LYS L 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 54 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 40 174.23 169.81 REMARK 500 LEU A 44 10.54 -144.63 REMARK 500 THR A 85 -60.47 -93.55 REMARK 500 LEU A 128 57.53 -98.91 REMARK 500 LYS B 60 -4.75 73.17 REMARK 500 VAL C 41 82.58 54.25 REMARK 500 PHE H 30 29.66 48.42 REMARK 500 PHE H 32 -34.85 -39.38 REMARK 500 ALA H 47 -166.65 -162.39 REMARK 500 ILE H 56 -75.71 -119.48 REMARK 500 LYS H 57 37.87 31.35 REMARK 500 ASN H 79 33.83 -96.66 REMARK 500 SER H 80 -70.66 -64.55 REMARK 500 GLN H 81 -56.02 -124.45 REMARK 500 SER H 82 99.71 -161.75 REMARK 500 GLU H 94 18.70 -141.77 REMARK 500 VAL H 119 -52.03 -125.43 REMARK 500 SER L 12 -6.02 66.59 REMARK 500 SER L 13 117.89 -161.95 REMARK 500 TYR L 35 59.03 -95.17 REMARK 500 THR L 54 -10.12 69.79 REMARK 500 SER L 55 14.01 -145.45 REMARK 500 ALA L 87 -166.07 -162.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 38 GLY A 39 -145.98 REMARK 500 GLY A 39 ALA A 40 139.35 REMARK 500 ALA A 40 VAL A 41 130.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-37292 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF QB-AB10 DBREF 8W5H A 0 132 UNP Q8LTE1 A1_BPQBE 1 133 DBREF 8W5H B 0 132 UNP Q8LTE1 A1_BPQBE 1 133 DBREF 8W5H C 0 132 UNP Q8LTE1 A1_BPQBE 1 133 DBREF 8W5H H 1 127 PDB 8W5H 8W5H 1 127 DBREF 8W5H L 1 110 PDB 8W5H 8W5H 1 110 SEQRES 1 A 133 MET ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY SEQRES 2 A 133 LYS ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY SEQRES 3 A 133 VAL ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN ALA SEQRES 4 A 133 GLY ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER SEQRES 5 A 133 VAL SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL SEQRES 6 A 133 GLN VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN SEQRES 7 A 133 GLY SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA SEQRES 8 A 133 ASP VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU SEQRES 9 A 133 GLU ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU SEQRES 10 A 133 ALA SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN SEQRES 11 A 133 PRO ALA TYR SEQRES 1 B 133 MET ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY SEQRES 2 B 133 LYS ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY SEQRES 3 B 133 VAL ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN ALA SEQRES 4 B 133 GLY ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER SEQRES 5 B 133 VAL SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL SEQRES 6 B 133 GLN VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN SEQRES 7 B 133 GLY SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA SEQRES 8 B 133 ASP VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU SEQRES 9 B 133 GLU ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU SEQRES 10 B 133 ALA SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN SEQRES 11 B 133 PRO ALA TYR SEQRES 1 C 133 MET ALA LYS LEU GLU THR VAL THR LEU GLY ASN ILE GLY SEQRES 2 C 133 LYS ASP GLY LYS GLN THR LEU VAL LEU ASN PRO ARG GLY SEQRES 3 C 133 VAL ASN PRO THR ASN GLY VAL ALA SER LEU SER GLN ALA SEQRES 4 C 133 GLY ALA VAL PRO ALA LEU GLU LYS ARG VAL THR VAL SER SEQRES 5 C 133 VAL SER GLN PRO SER ARG ASN ARG LYS ASN TYR LYS VAL SEQRES 6 C 133 GLN VAL LYS ILE GLN ASN PRO THR ALA CYS THR ALA ASN SEQRES 7 C 133 GLY SER CYS ASP PRO SER VAL THR ARG GLN ALA TYR ALA SEQRES 8 C 133 ASP VAL THR PHE SER PHE THR GLN TYR SER THR ASP GLU SEQRES 9 C 133 GLU ARG ALA PHE VAL ARG THR GLU LEU ALA ALA LEU LEU SEQRES 10 C 133 ALA SER PRO LEU LEU ILE ASP ALA ILE ASP GLN LEU ASN SEQRES 11 C 133 PRO ALA TYR SEQRES 1 H 127 VAL HIS SER GLU VAL GLN LEU GLN GLU SER GLY GLY GLY SEQRES 2 H 127 LEU VAL GLN PRO GLY GLY SER LEU SER LEU SER CYS ALA SEQRES 3 H 127 ALA SER GLY PHE THR PHE THR ASP TYR TYR MET SER TRP SEQRES 4 H 127 VAL ARG GLN PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY SEQRES 5 H 127 PHE ILE ARG ILE LYS ALA ASN SER TYR THR THR GLU TYR SEQRES 6 H 127 SER ALA SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP SEQRES 7 H 127 ASN SER GLN SER ILE LEU TYR LEU GLN MET ASN ALA LEU SEQRES 8 H 127 ARG ALA GLU ASP SER ALA THR TYR TYR CYS ALA ARG SER SEQRES 9 H 127 PRO ASP TYR TYR GLY GLY TYR TYR PHE ASP TYR TRP GLY SEQRES 10 H 127 GLN VAL THR THR LEU THR VAL SER SER ALA SEQRES 1 L 110 VAL HIS SER ASP ILE GLN MET THR GLN THR THR SER SER SEQRES 2 L 110 LEU SER ALA SER LEU GLY ASP ARG VAL THR ILE THR CYS SEQRES 3 L 110 ARG ALA SER GLN VAL ILE SER ASN TYR LEU ASN TRP TYR SEQRES 4 L 110 GLN GLN LYS PRO ASP GLY THR VAL LYS LEU LEU ILE TYR SEQRES 5 L 110 TYR THR SER ARG LEU HIS SER GLY VAL PRO SER ARG PHE SEQRES 6 L 110 SER GLY SER GLY SER GLY THR ASP TYR SER LEU THR ILE SEQRES 7 L 110 SER ASN LEU GLU GLN GLU ASP ILE ALA THR TYR PHE CYS SEQRES 8 L 110 GLN GLN GLY ASN THR LEU PRO TYR THR PHE GLY GLY GLY SEQRES 9 L 110 THR LYS LEU GLU ILE LYS HELIX 1 AA1 THR A 101 LEU A 116 1 16 HELIX 2 AA2 SER A 118 ASP A 126 1 9 HELIX 3 AA3 VAL B 41 GLU B 45 5 5 HELIX 4 AA4 THR B 101 LEU B 116 1 16 HELIX 5 AA5 SER B 118 ASP B 126 1 9 HELIX 6 AA6 VAL C 41 GLU C 45 5 5 HELIX 7 AA7 THR C 101 LEU C 116 1 16 HELIX 8 AA8 SER C 118 ASP C 123 1 6 HELIX 9 AA9 THR H 31 TYR H 35 5 5 SHEET 1 AA112 VAL A 6 ILE A 11 0 SHEET 2 AA112 GLN A 17 VAL A 26 -1 O LEU A 19 N LEU A 8 SHEET 3 AA112 ALA A 33 GLN A 37 -1 O SER A 36 N ASN A 22 SHEET 4 AA112 ARG A 47 SER A 53 -1 O VAL A 48 N LEU A 35 SHEET 5 AA112 TYR A 62 CYS A 74 -1 O GLN A 65 N SER A 51 SHEET 6 AA112 SER A 83 PHE A 96 -1 O PHE A 94 N VAL A 64 SHEET 7 AA112 SER B 83 PHE B 96 -1 O TYR B 89 N SER A 95 SHEET 8 AA112 TYR B 62 CYS B 74 -1 N VAL B 64 O PHE B 94 SHEET 9 AA112 ARG B 47 SER B 53 -1 N SER B 53 O LYS B 63 SHEET 10 AA112 ALA B 33 SER B 36 -1 N LEU B 35 O VAL B 48 SHEET 11 AA112 GLN B 17 VAL B 26 -1 N ASN B 22 O SER B 36 SHEET 12 AA112 VAL B 6 ILE B 11 -1 N ILE B 11 O GLN B 17 SHEET 1 AA2 6 VAL C 6 ILE C 11 0 SHEET 2 AA2 6 GLN C 17 PRO C 23 -1 O GLN C 17 N ILE C 11 SHEET 3 AA2 6 ALA C 33 GLN C 37 -1 O SER C 36 N ASN C 22 SHEET 4 AA2 6 ARG C 47 VAL C 52 -1 O VAL C 50 N ALA C 33 SHEET 5 AA2 6 ASN C 61 CYS C 74 -1 O GLN C 69 N ARG C 47 SHEET 6 AA2 6 SER C 83 THR C 97 -1 O VAL C 92 N VAL C 66 SHEET 1 AA3 3 SER H 20 LEU H 21 0 SHEET 2 AA3 3 LEU H 86 ASN H 89 -1 O MET H 88 N LEU H 21 SHEET 3 AA3 3 THR H 74 ILE H 75 -1 N THR H 74 O GLN H 87 SHEET 1 AA4 5 THR H 63 TYR H 65 0 SHEET 2 AA4 5 GLU H 49 ILE H 54 -1 N PHE H 53 O GLU H 64 SHEET 3 AA4 5 TYR H 36 GLN H 42 -1 N ARG H 41 O GLU H 49 SHEET 4 AA4 5 THR H 98 SER H 104 -1 O TYR H 100 N VAL H 40 SHEET 5 AA4 5 GLN H 118 THR H 121 -1 O THR H 120 N TYR H 99 SHEET 1 AA5 2 ASP H 106 TYR H 107 0 SHEET 2 AA5 2 GLY H 110 TYR H 111 -1 O GLY H 110 N TYR H 107 SHEET 1 AA6 3 THR L 23 ARG L 27 0 SHEET 2 AA6 3 ASP L 73 ILE L 78 -1 O TYR L 74 N CYS L 26 SHEET 3 AA6 3 PHE L 65 SER L 70 -1 N SER L 66 O THR L 77 SHEET 1 AA7 4 VAL L 47 ILE L 51 0 SHEET 2 AA7 4 LEU L 36 GLN L 41 -1 N GLN L 40 O LYS L 48 SHEET 3 AA7 4 THR L 88 GLN L 93 -1 O GLN L 92 N ASN L 37 SHEET 4 AA7 4 THR L 105 LYS L 106 -1 O THR L 105 N TYR L 89 SSBOND 1 CYS A 74 CYS C 80 1555 1555 2.03 SSBOND 2 CYS H 25 CYS H 101 1555 1555 2.04 SSBOND 3 CYS L 26 CYS L 91 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000