HEADER PROTEIN BINDING 28-AUG-23 8W6A TITLE CRYSTAL STRUCTURE OF TAX1BP1 LIR REGION IN COMPLEX WITH GABARAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A, B, D, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TAX1-BINDING PROTEIN 1; COMPND 7 CHAIN: C, E, F, H; COMPND 8 SYNONYM: TRAF6-BINDING PROTEIN; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GABARAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TAX1BP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ATG8, AUTOPHAGY, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.F.ZHANG,L.F.PAN REVDAT 1 10-JUL-24 8W6A 0 JRNL AUTH M.ZHANG,Y.WANG,X.GONG,Y.WANG,Y.ZHANG,Y.TANG,X.ZHOU,H.LIU, JRNL AUTH 2 Y.HUANG,J.ZHANG,L.PAN JRNL TITL MECHANISTIC INSIGHTS INTO THE INTERACTIONS OF TAX1BP1 WITH JRNL TITL 2 RB1CC1 AND MAMMALIAN ATG8 FAMILY PROTEINS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 50121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38437556 JRNL DOI 10.1073/PNAS.2315550121 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 95502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 4898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.6800 - 4.7600 0.99 3087 111 0.1693 0.1716 REMARK 3 2 4.7500 - 3.7800 1.00 3021 216 0.1343 0.1426 REMARK 3 3 3.7700 - 3.3000 1.00 3028 172 0.1550 0.1849 REMARK 3 4 3.3000 - 3.0000 1.00 3094 124 0.1637 0.1723 REMARK 3 5 3.0000 - 2.7900 1.00 2970 172 0.1799 0.2163 REMARK 3 6 2.7800 - 2.6200 1.00 3044 176 0.1749 0.1554 REMARK 3 7 2.6200 - 2.4900 1.00 3128 128 0.1824 0.1753 REMARK 3 8 2.4900 - 2.3800 1.00 3044 152 0.1776 0.2033 REMARK 3 9 2.3800 - 2.2900 1.00 3035 192 0.1846 0.2147 REMARK 3 10 2.2900 - 2.2100 1.00 2940 252 0.1703 0.1661 REMARK 3 11 2.2100 - 2.1400 1.00 3048 140 0.1764 0.1668 REMARK 3 12 2.1400 - 2.0800 1.00 3074 184 0.1774 0.1974 REMARK 3 13 2.0800 - 2.0300 1.00 3107 96 0.1782 0.2143 REMARK 3 14 2.0200 - 1.9800 1.00 3063 148 0.1772 0.1976 REMARK 3 15 1.9800 - 1.9300 1.00 3040 214 0.1830 0.1921 REMARK 3 16 1.9300 - 1.8900 1.00 2966 200 0.1815 0.2002 REMARK 3 17 1.8900 - 1.8500 1.00 3085 104 0.1924 0.2426 REMARK 3 18 1.8500 - 1.8200 1.00 3069 176 0.1886 0.2185 REMARK 3 19 1.8200 - 1.7900 1.00 3024 164 0.1916 0.1993 REMARK 3 20 1.7800 - 1.7500 1.00 3056 172 0.1932 0.1986 REMARK 3 21 1.7500 - 1.7300 1.00 3064 100 0.2016 0.2418 REMARK 3 22 1.7300 - 1.7000 1.00 3081 164 0.2006 0.2211 REMARK 3 23 1.7000 - 1.6800 1.00 2955 204 0.2050 0.2409 REMARK 3 24 1.6700 - 1.6500 1.00 3112 200 0.2222 0.2885 REMARK 3 25 1.6500 - 1.6300 1.00 2979 152 0.2134 0.1990 REMARK 3 26 1.6300 - 1.6100 0.99 3056 156 0.2108 0.2931 REMARK 3 27 1.6100 - 1.5900 0.98 2958 168 0.2080 0.2055 REMARK 3 28 1.5900 - 1.5700 0.96 2889 153 0.2047 0.2061 REMARK 3 29 1.5700 - 1.5500 0.93 2822 168 0.2248 0.2440 REMARK 3 30 1.5500 - 1.5300 0.89 2765 140 0.2247 0.2016 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.146 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.613 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5087 REMARK 3 ANGLE : 1.392 6904 REMARK 3 CHIRALITY : 0.100 746 REMARK 3 PLANARITY : 0.013 894 REMARK 3 DIHEDRAL : 14.354 2023 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8W6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300039978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 79.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.8 M SODIUM ACETATE TRIHYDRATE AND REMARK 280 0.1 M BIS-TRIS PROPANE AT PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 70.58000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.74938 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.81333 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 70.58000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 40.74938 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.81333 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 70.58000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 40.74938 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.81333 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 81.49876 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 57.62667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 81.49876 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 57.62667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 81.49876 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 57.62667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 SER C 123 REMARK 465 SER C 124 REMARK 465 MET D 1 REMARK 465 SER E 123 REMARK 465 SER E 124 REMARK 465 SER F 123 REMARK 465 SER F 124 REMARK 465 MET G 1 REMARK 465 SER H 123 REMARK 465 SER H 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 ARG A 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 40 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 73 CG CD OE1 OE2 REMARK 470 GLU E 135 CG CD OE1 OE2 REMARK 470 ARG G 40 CG CD NE CZ NH1 NH2 REMARK 470 ARG G 71 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 28 O HOH B 201 1.24 REMARK 500 O HOH C 202 O HOH C 210 1.97 REMARK 500 O HOH F 202 O HOH F 210 1.98 REMARK 500 NH2 ARG B 40 O HOH B 202 1.99 REMARK 500 O ASP H 139 O HOH H 201 2.01 REMARK 500 O HOH D 285 O HOH D 319 2.03 REMARK 500 O ASP F 139 O HOH F 201 2.03 REMARK 500 O HOH E 202 O HOH E 210 2.04 REMARK 500 O ASP E 139 O HOH E 201 2.04 REMARK 500 O HOH D 312 O HOH F 216 2.07 REMARK 500 O HOH D 209 O HOH D 304 2.07 REMARK 500 O ASP C 139 O HOH C 201 2.08 REMARK 500 O HOH B 314 O HOH E 215 2.09 REMARK 500 NH1 ARG G 28 O HOH G 201 2.09 REMARK 500 O ASP A 43 NH2 ARG B 40 2.11 REMARK 500 O LYS B 6 O HOH B 203 2.14 REMARK 500 O HOH A 295 O HOH A 305 2.14 REMARK 500 O HOH G 326 O HOH H 213 2.15 REMARK 500 O HOH A 309 O HOH C 216 2.17 REMARK 500 OE1 GLN G 96 O HOH G 202 2.17 REMARK 500 O HOH B 243 O HOH G 253 2.17 REMARK 500 O HOH A 301 O HOH A 304 2.17 REMARK 500 OE1 GLN B 96 O HOH B 204 2.18 REMARK 500 O HOH G 334 O HOH G 341 2.18 REMARK 500 OE1 GLN D 96 O HOH D 201 2.19 REMARK 500 O LYS D 6 O HOH D 202 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 319 O HOH H 216 9555 2.18 REMARK 500 O HOH A 272 O HOH A 308 8544 2.19 REMARK 500 O HOH A 210 O HOH D 203 8544 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 78 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TYR A 115 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 94 CB - CG - CD1 ANGL. DEV. = -11.1 DEGREES REMARK 500 TYR D 115 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 128 -37.73 -135.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 330 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH D 330 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH D 331 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH G 342 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH G 343 DISTANCE = 6.94 ANGSTROMS REMARK 525 HOH G 344 DISTANCE = 7.35 ANGSTROMS DBREF 8W6A A 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 8W6A B 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 8W6A C 123 151 UNP Q86VP1 TAXB1_HUMAN 123 151 DBREF 8W6A D 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 8W6A E 123 151 UNP Q86VP1 TAXB1_HUMAN 123 151 DBREF 8W6A F 123 151 UNP Q86VP1 TAXB1_HUMAN 123 151 DBREF 8W6A G 1 117 UNP O95166 GBRAP_HUMAN 1 117 DBREF 8W6A H 123 151 UNP Q86VP1 TAXB1_HUMAN 123 151 SEQRES 1 A 117 MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE GLU LYS SEQRES 2 A 117 ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS TYR PRO SEQRES 3 A 117 ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO LYS ALA SEQRES 4 A 117 ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU VAL PRO SEQRES 5 A 117 SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU ILE ARG SEQRES 6 A 117 LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU PHE PHE SEQRES 7 A 117 PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA THR MET SEQRES 8 A 117 GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP PHE PHE SEQRES 9 A 117 LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 B 117 MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE GLU LYS SEQRES 2 B 117 ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS TYR PRO SEQRES 3 B 117 ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO LYS ALA SEQRES 4 B 117 ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU VAL PRO SEQRES 5 B 117 SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU ILE ARG SEQRES 6 B 117 LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU PHE PHE SEQRES 7 B 117 PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA THR MET SEQRES 8 B 117 GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP PHE PHE SEQRES 9 B 117 LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 C 29 SER SER PRO VAL GLU GLU LEU LEU THR MET GLU ASP GLU SEQRES 2 C 29 GLY ASN SER ASP MET LEU VAL VAL THR THR LYS ALA GLY SEQRES 3 C 29 LEU LEU GLU SEQRES 1 D 117 MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE GLU LYS SEQRES 2 D 117 ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS TYR PRO SEQRES 3 D 117 ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO LYS ALA SEQRES 4 D 117 ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU VAL PRO SEQRES 5 D 117 SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU ILE ARG SEQRES 6 D 117 LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU PHE PHE SEQRES 7 D 117 PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA THR MET SEQRES 8 D 117 GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP PHE PHE SEQRES 9 D 117 LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 E 29 SER SER PRO VAL GLU GLU LEU LEU THR MET GLU ASP GLU SEQRES 2 E 29 GLY ASN SER ASP MET LEU VAL VAL THR THR LYS ALA GLY SEQRES 3 E 29 LEU LEU GLU SEQRES 1 F 29 SER SER PRO VAL GLU GLU LEU LEU THR MET GLU ASP GLU SEQRES 2 F 29 GLY ASN SER ASP MET LEU VAL VAL THR THR LYS ALA GLY SEQRES 3 F 29 LEU LEU GLU SEQRES 1 G 117 MET LYS PHE VAL TYR LYS GLU GLU HIS PRO PHE GLU LYS SEQRES 2 G 117 ARG ARG SER GLU GLY GLU LYS ILE ARG LYS LYS TYR PRO SEQRES 3 G 117 ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO LYS ALA SEQRES 4 G 117 ARG ILE GLY ASP LEU ASP LYS LYS LYS TYR LEU VAL PRO SEQRES 5 G 117 SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU ILE ARG SEQRES 6 G 117 LYS ARG ILE HIS LEU ARG ALA GLU ASP ALA LEU PHE PHE SEQRES 7 G 117 PHE VAL ASN ASN VAL ILE PRO PRO THR SER ALA THR MET SEQRES 8 G 117 GLY GLN LEU TYR GLN GLU HIS HIS GLU GLU ASP PHE PHE SEQRES 9 G 117 LEU TYR ILE ALA TYR SER ASP GLU SER VAL TYR GLY LEU SEQRES 1 H 29 SER SER PRO VAL GLU GLU LEU LEU THR MET GLU ASP GLU SEQRES 2 H 29 GLY ASN SER ASP MET LEU VAL VAL THR THR LYS ALA GLY SEQRES 3 H 29 LEU LEU GLU FORMUL 9 HOH *614(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 HELIX 5 AA5 PHE B 3 HIS B 9 1 7 HELIX 6 AA6 PRO B 10 TYR B 25 1 16 HELIX 7 AA7 THR B 56 ILE B 68 1 13 HELIX 8 AA8 THR B 90 HIS B 99 1 10 HELIX 9 AA9 THR C 145 LEU C 150 5 6 HELIX 10 AB1 PHE D 3 HIS D 9 1 7 HELIX 11 AB2 PRO D 10 TYR D 25 1 16 HELIX 12 AB3 THR D 56 ILE D 68 1 13 HELIX 13 AB4 THR D 90 HIS D 99 1 10 HELIX 14 AB5 THR E 145 LEU E 150 5 6 HELIX 15 AB6 THR F 145 LEU F 150 5 6 HELIX 16 AB7 PHE G 3 HIS G 9 1 7 HELIX 17 AB8 PRO G 10 TYR G 25 1 16 HELIX 18 AB9 THR G 56 ILE G 68 1 13 HELIX 19 AC1 THR G 90 HIS G 99 1 10 HELIX 20 AC2 THR H 145 LEU H 150 5 6 SHEET 1 AA1 6 PHE A 77 PHE A 79 0 SHEET 2 AA1 6 LEU A 105 SER A 110 -1 O SER A 110 N PHE A 77 SHEET 3 AA1 6 ARG A 28 LYS A 35 1 N ILE A 32 O ILE A 107 SHEET 4 AA1 6 LYS A 48 PRO A 52 -1 O VAL A 51 N VAL A 29 SHEET 5 AA1 6 MET C 140 VAL C 143 1 O LEU C 141 N LYS A 48 SHEET 6 AA1 6 THR C 131 GLU C 133 -1 N MET C 132 O VAL C 142 SHEET 1 AA2 6 PHE B 77 PHE B 79 0 SHEET 2 AA2 6 LEU B 105 SER B 110 -1 O SER B 110 N PHE B 77 SHEET 3 AA2 6 ARG B 28 LYS B 35 1 N ILE B 32 O ILE B 107 SHEET 4 AA2 6 LYS B 48 PRO B 52 -1 O VAL B 51 N VAL B 29 SHEET 5 AA2 6 MET E 140 VAL E 143 1 O LEU E 141 N LYS B 48 SHEET 6 AA2 6 THR E 131 GLU E 133 -1 N MET E 132 O VAL E 142 SHEET 1 AA3 6 PHE D 77 PHE D 79 0 SHEET 2 AA3 6 LEU D 105 SER D 110 -1 O SER D 110 N PHE D 77 SHEET 3 AA3 6 ARG D 28 LYS D 35 1 N ILE D 32 O ILE D 107 SHEET 4 AA3 6 LYS D 48 PRO D 52 -1 O VAL D 51 N VAL D 29 SHEET 5 AA3 6 MET F 140 VAL F 143 1 O LEU F 141 N LYS D 48 SHEET 6 AA3 6 THR F 131 GLU F 133 -1 N MET F 132 O VAL F 142 SHEET 1 AA4 6 PHE G 77 PHE G 79 0 SHEET 2 AA4 6 LEU G 105 SER G 110 -1 O SER G 110 N PHE G 77 SHEET 3 AA4 6 ARG G 28 LYS G 35 1 N ILE G 32 O ILE G 107 SHEET 4 AA4 6 LYS G 48 PRO G 52 -1 O VAL G 51 N VAL G 29 SHEET 5 AA4 6 MET H 140 VAL H 143 1 O LEU H 141 N LYS G 48 SHEET 6 AA4 6 THR H 131 GLU H 133 -1 N MET H 132 O VAL H 142 CRYST1 141.160 141.160 86.440 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007084 0.004090 0.000000 0.00000 SCALE2 0.000000 0.008180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011569 0.00000