HEADER VIRAL PROTEIN 30-AUG-23 8W6W
TITLE CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF NUCLEOCAPSID PROTEIN FROM
TITLE 2 SARS-COV-2 IN COMPLEX WITH AMPICILLIN
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NUCLEOPROTEIN;
COMPND 3 CHAIN: A, B;
COMPND 4 FRAGMENT: C-TERMINAL DOMAIN;
COMPND 5 SYNONYM: N,NUCLEOCAPSID PROTEIN,NC,PROTEIN N;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS
SOURCE 3 2;
SOURCE 4 ORGANISM_TAXID: 2697049;
SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008
KEYWDS SARS-COV-2, NUCLEOCAPSID PROTEIN, RNA BINDING C-TERMINAL DOMAIN,
KEYWDS 2 DRUGS, VIRAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR P.DHAKA,J.K.MAHTO,S.TOMAR,P.KUMAR
REVDAT 2 02-APR-25 8W6W 1 JRNL
REVDAT 1 05-MAR-25 8W6W 0
JRNL AUTH P.DHAKA,J.K.MAHTO,A.SINGH,P.KUMAR,S.TOMAR
JRNL TITL STRUCTURAL INSIGHTS INTO THE RNA BINDING INHIBITORS OF THE
JRNL TITL 2 C-TERMINAL DOMAIN OF THE SARS-COV-2 NUCLEOCAPSID.
JRNL REF J.STRUCT.BIOL. V. 217 08197 2025
JRNL REFN ESSN 1095-8657
JRNL PMID 40113149
JRNL DOI 10.1016/J.JSB.2025.108197
REMARK 2
REMARK 2 RESOLUTION. 2.20 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0419
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.17
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6
REMARK 3 NUMBER OF REFLECTIONS : 10145
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.182
REMARK 3 R VALUE (WORKING SET) : 0.180
REMARK 3 FREE R VALUE : 0.238
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600
REMARK 3 FREE R VALUE TEST SET COUNT : 486
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26
REMARK 3 REFLECTION IN BIN (WORKING SET) : 718
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0
REMARK 3 BIN R VALUE (WORKING SET) : 0.1840
REMARK 3 BIN FREE R VALUE SET COUNT : 50
REMARK 3 BIN FREE R VALUE : 0.2600
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1726
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 28
REMARK 3 SOLVENT ATOMS : 230
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.22
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 0.06000
REMARK 3 B22 (A**2) : -0.18000
REMARK 3 B33 (A**2) : 0.04000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.11000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.385
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.236
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.953
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1812 ; 0.007 ; 0.011
REMARK 3 BOND LENGTHS OTHERS (A): 1680 ; 0.001 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2455 ; 1.562 ; 1.683
REMARK 3 BOND ANGLES OTHERS (DEGREES): 3865 ; 0.505 ; 1.590
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 7.538 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 14 ;19.980 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 296 ;16.355 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.075 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2176 ; 0.008 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 456 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 867 ; 0.868 ; 0.982
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 867 ; 0.858 ; 0.982
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 1.486 ; 1.756
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1083 ; 1.485 ; 1.760
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 945 ; 1.435 ; 1.253
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 946 ; 1.435 ; 1.254
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1372 ; 2.381 ; 2.220
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2259 ; 5.116 ;13.550
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2207 ; 4.894 ;12.490
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 2
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 11 A 301
REMARK 3 ORIGIN FOR THE GROUP (A): 8.5975 -5.6765 8.9090
REMARK 3 T TENSOR
REMARK 3 T11: 0.0130 T22: 0.0238
REMARK 3 T33: 0.0102 T12: 0.0047
REMARK 3 T13: 0.0001 T23: 0.0023
REMARK 3 L TENSOR
REMARK 3 L11: 0.2762 L22: 0.6702
REMARK 3 L33: 0.2481 L12: -0.0436
REMARK 3 L13: -0.0325 L23: 0.0046
REMARK 3 S TENSOR
REMARK 3 S11: -0.0308 S12: -0.0149 S13: -0.0369
REMARK 3 S21: 0.0236 S22: -0.0061 S23: 0.0133
REMARK 3 S31: -0.0114 S32: -0.0080 S33: 0.0368
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : B 11 B 301
REMARK 3 ORIGIN FOR THE GROUP (A): 19.3720 6.3444 15.8245
REMARK 3 T TENSOR
REMARK 3 T11: 0.0215 T22: 0.0403
REMARK 3 T33: 0.0070 T12: -0.0012
REMARK 3 T13: -0.0107 T23: 0.0044
REMARK 3 L TENSOR
REMARK 3 L11: 0.1096 L22: 0.7533
REMARK 3 L33: 0.2982 L12: -0.2287
REMARK 3 L13: 0.0145 L23: 0.0996
REMARK 3 S TENSOR
REMARK 3 S11: -0.0128 S12: 0.0100 S13: -0.0011
REMARK 3 S21: 0.0891 S22: -0.0064 S23: -0.0222
REMARK 3 S31: -0.0117 S32: 0.0033 S33: 0.0192
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 8W6W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-AUG-23.
REMARK 100 THE DEPOSITION ID IS D_1300040259.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 05-JAN-23
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : ROTATING ANODE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10644
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200
REMARK 200 RESOLUTION RANGE LOW (A) : 24.170
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 200 DATA REDUNDANCY : 5.500
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.4000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 6YUN
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 25.11
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.64
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.2 M LITHIUM SULFATE, 50
REMARK 280 MM TRIS PH 8.0, AMPICILLIN, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.80200
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5740 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 11470 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -1
REMARK 465 GLY A 0
REMARK 465 THR A 1
REMARK 465 LYS A 2
REMARK 465 LYS A 3
REMARK 465 SER A 4
REMARK 465 ALA A 5
REMARK 465 ALA A 6
REMARK 465 GLU A 7
REMARK 465 ALA A 8
REMARK 465 SER A 9
REMARK 465 LYS A 10
REMARK 465 PRO A 119
REMARK 465 THR A 120
REMARK 465 GLU A 121
REMARK 465 PRO A 122
REMARK 465 LYS A 123
REMARK 465 LYS A 124
REMARK 465 ASP A 125
REMARK 465 LYS A 126
REMARK 465 LYS A 127
REMARK 465 LYS A 128
REMARK 465 LYS A 129
REMARK 465 ALA A 130
REMARK 465 ASP A 131
REMARK 465 GLU A 132
REMARK 465 THR A 133
REMARK 465 GLN A 134
REMARK 465 ALA A 135
REMARK 465 LEU A 136
REMARK 465 PRO A 137
REMARK 465 GLN A 138
REMARK 465 ARG A 139
REMARK 465 GLN A 140
REMARK 465 LYS A 141
REMARK 465 LYS A 142
REMARK 465 GLN A 143
REMARK 465 GLN A 144
REMARK 465 THR A 145
REMARK 465 VAL A 146
REMARK 465 THR A 147
REMARK 465 LEU A 148
REMARK 465 LEU A 149
REMARK 465 PRO A 150
REMARK 465 ALA A 151
REMARK 465 ALA A 152
REMARK 465 ASP A 153
REMARK 465 LEU A 154
REMARK 465 ASP A 155
REMARK 465 ASP A 156
REMARK 465 PHE A 157
REMARK 465 SER A 158
REMARK 465 LYS A 159
REMARK 465 GLN A 160
REMARK 465 LEU A 161
REMARK 465 GLN A 162
REMARK 465 GLN A 163
REMARK 465 SER A 164
REMARK 465 MET A 165
REMARK 465 SER A 166
REMARK 465 SER A 167
REMARK 465 ALA A 168
REMARK 465 ASP A 169
REMARK 465 SER A 170
REMARK 465 THR A 171
REMARK 465 GLN A 172
REMARK 465 ALA A 173
REMARK 465 MET B -1
REMARK 465 GLY B 0
REMARK 465 THR B 1
REMARK 465 LYS B 2
REMARK 465 LYS B 3
REMARK 465 SER B 4
REMARK 465 ALA B 5
REMARK 465 ALA B 6
REMARK 465 GLU B 7
REMARK 465 ALA B 8
REMARK 465 SER B 9
REMARK 465 LYS B 10
REMARK 465 PRO B 119
REMARK 465 THR B 120
REMARK 465 GLU B 121
REMARK 465 PRO B 122
REMARK 465 LYS B 123
REMARK 465 LYS B 124
REMARK 465 ASP B 125
REMARK 465 LYS B 126
REMARK 465 LYS B 127
REMARK 465 LYS B 128
REMARK 465 LYS B 129
REMARK 465 ALA B 130
REMARK 465 ASP B 131
REMARK 465 GLU B 132
REMARK 465 THR B 133
REMARK 465 GLN B 134
REMARK 465 ALA B 135
REMARK 465 LEU B 136
REMARK 465 PRO B 137
REMARK 465 GLN B 138
REMARK 465 ARG B 139
REMARK 465 GLN B 140
REMARK 465 LYS B 141
REMARK 465 LYS B 142
REMARK 465 GLN B 143
REMARK 465 GLN B 144
REMARK 465 THR B 145
REMARK 465 VAL B 146
REMARK 465 THR B 147
REMARK 465 LEU B 148
REMARK 465 LEU B 149
REMARK 465 PRO B 150
REMARK 465 ALA B 151
REMARK 465 ALA B 152
REMARK 465 ASP B 153
REMARK 465 LEU B 154
REMARK 465 ASP B 155
REMARK 465 ASP B 156
REMARK 465 PHE B 157
REMARK 465 SER B 158
REMARK 465 LYS B 159
REMARK 465 GLN B 160
REMARK 465 LEU B 161
REMARK 465 GLN B 162
REMARK 465 GLN B 163
REMARK 465 SER B 164
REMARK 465 MET B 165
REMARK 465 SER B 166
REMARK 465 SER B 167
REMARK 465 ALA B 168
REMARK 465 ASP B 169
REMARK 465 SER B 170
REMARK 465 THR B 171
REMARK 465 GLN B 172
REMARK 465 ALA B 173
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS B 109 CG CD CE NZ
DBREF 8W6W A 1 173 UNP P0DTC9 NCAP_SARS2 247 419
DBREF 8W6W B 1 173 UNP P0DTC9 NCAP_SARS2 247 419
SEQADV 8W6W MET A -1 UNP P0DTC9 INITIATING METHIONINE
SEQADV 8W6W GLY A 0 UNP P0DTC9 EXPRESSION TAG
SEQADV 8W6W MET B -1 UNP P0DTC9 INITIATING METHIONINE
SEQADV 8W6W GLY B 0 UNP P0DTC9 EXPRESSION TAG
SEQRES 1 A 175 MET GLY THR LYS LYS SER ALA ALA GLU ALA SER LYS LYS
SEQRES 2 A 175 PRO ARG GLN LYS ARG THR ALA THR LYS ALA TYR ASN VAL
SEQRES 3 A 175 THR GLN ALA PHE GLY ARG ARG GLY PRO GLU GLN THR GLN
SEQRES 4 A 175 GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG GLN GLY THR
SEQRES 5 A 175 ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN PHE ALA PRO
SEQRES 6 A 175 SER ALA SER ALA PHE PHE GLY MET SER ARG ILE GLY MET
SEQRES 7 A 175 GLU VAL THR PRO SER GLY THR TRP LEU THR TYR THR GLY
SEQRES 8 A 175 ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN PHE LYS ASP
SEQRES 9 A 175 GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP ALA TYR LYS
SEQRES 10 A 175 THR PHE PRO PRO THR GLU PRO LYS LYS ASP LYS LYS LYS
SEQRES 11 A 175 LYS ALA ASP GLU THR GLN ALA LEU PRO GLN ARG GLN LYS
SEQRES 12 A 175 LYS GLN GLN THR VAL THR LEU LEU PRO ALA ALA ASP LEU
SEQRES 13 A 175 ASP ASP PHE SER LYS GLN LEU GLN GLN SER MET SER SER
SEQRES 14 A 175 ALA ASP SER THR GLN ALA
SEQRES 1 B 175 MET GLY THR LYS LYS SER ALA ALA GLU ALA SER LYS LYS
SEQRES 2 B 175 PRO ARG GLN LYS ARG THR ALA THR LYS ALA TYR ASN VAL
SEQRES 3 B 175 THR GLN ALA PHE GLY ARG ARG GLY PRO GLU GLN THR GLN
SEQRES 4 B 175 GLY ASN PHE GLY ASP GLN GLU LEU ILE ARG GLN GLY THR
SEQRES 5 B 175 ASP TYR LYS HIS TRP PRO GLN ILE ALA GLN PHE ALA PRO
SEQRES 6 B 175 SER ALA SER ALA PHE PHE GLY MET SER ARG ILE GLY MET
SEQRES 7 B 175 GLU VAL THR PRO SER GLY THR TRP LEU THR TYR THR GLY
SEQRES 8 B 175 ALA ILE LYS LEU ASP ASP LYS ASP PRO ASN PHE LYS ASP
SEQRES 9 B 175 GLN VAL ILE LEU LEU ASN LYS HIS ILE ASP ALA TYR LYS
SEQRES 10 B 175 THR PHE PRO PRO THR GLU PRO LYS LYS ASP LYS LYS LYS
SEQRES 11 B 175 LYS ALA ASP GLU THR GLN ALA LEU PRO GLN ARG GLN LYS
SEQRES 12 B 175 LYS GLN GLN THR VAL THR LEU LEU PRO ALA ALA ASP LEU
SEQRES 13 B 175 ASP ASP PHE SER LYS GLN LEU GLN GLN SER MET SER SER
SEQRES 14 B 175 ALA ASP SER THR GLN ALA
HET EDO A 301 4
HET AIC B 201 24
HETNAM EDO 1,2-ETHANEDIOL
HETNAM AIC (2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,
HETNAM 2 AIC 3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-
HETNAM 3 AIC CARBOXYLIC ACID
HETSYN EDO ETHYLENE GLYCOL
HETSYN AIC AMPICILLIN; D(-)-ALPHA-AMINOBENZYLPENICILLIN; 6-[D(-)-
HETSYN 2 AIC ALPHA-AMINOPHENYLLACETAMIDO]PENICILLANIC ACID
FORMUL 3 EDO C2 H6 O2
FORMUL 4 AIC C16 H19 N3 O4 S
FORMUL 5 HOH *230(H2 O)
HELIX 1 AA1 PRO A 12 ARG A 16 5 5
HELIX 2 AA2 ASN A 23 GLY A 29 1 7
HELIX 3 AA3 ASP A 42 GLY A 49 1 8
HELIX 4 AA4 THR A 50 TYR A 52 5 3
HELIX 5 AA5 HIS A 54 GLN A 60 1 7
HELIX 6 AA6 SER A 64 SER A 72 1 9
HELIX 7 AA7 ASN A 99 ILE A 111 1 13
HELIX 8 AA8 ASP A 112 PHE A 117 5 6
HELIX 9 AA9 PRO B 12 ARG B 16 5 5
HELIX 10 AB1 ASN B 23 GLY B 29 1 7
HELIX 11 AB2 ASP B 42 GLY B 49 1 8
HELIX 12 AB3 THR B 50 TYR B 52 5 3
HELIX 13 AB4 HIS B 54 GLN B 60 1 7
HELIX 14 AB5 SER B 64 SER B 72 1 9
HELIX 15 AB6 ASN B 99 ILE B 111 1 13
HELIX 16 AB7 ASP B 112 PHE B 117 5 6
SHEET 1 AA1 4 ARG A 73 THR A 79 0
SHEET 2 AA1 4 GLY A 82 LYS A 92 -1 O THR A 88 N ARG A 73
SHEET 3 AA1 4 GLY B 82 LYS B 92 -1 O LEU B 85 N ILE A 91
SHEET 4 AA1 4 ARG B 73 THR B 79 -1 N ARG B 73 O THR B 88
CRYST1 44.582 43.604 56.762 90.00 108.66 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022431 0.000000 0.007574 0.00000
SCALE2 0.000000 0.022934 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018595 0.00000