HEADER HYDROLASE 07-SEP-23 8WAI TITLE STRUCTURE OF RVY_06210 AT 1.45 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: RVY_06210; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAMAZZOTTIUS VARIEORNATUS; SOURCE 3 ORGANISM_TAXID: 947166; SOURCE 4 STRAIN: YOKOZUNA-1; SOURCE 5 GENE: RVY_06210-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS FERRITIN-LIKE, TARDIGRADE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KATO,Y.FUKUDA,T.INOUE REVDAT 1 11-SEP-24 8WAI 0 JRNL AUTH S.KATO,Y.FUKUDA,T.INOUE JRNL TITL METABOLITE PHOSPHATASE FROM ANHYDROBIOTIC TARDIGRADES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 129284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 6473 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.5800 - 4.5000 1.00 4428 199 0.1552 0.1539 REMARK 3 2 4.5000 - 3.5800 1.00 4208 211 0.1358 0.1474 REMARK 3 3 3.5800 - 3.1200 1.00 4194 232 0.1558 0.1943 REMARK 3 4 3.1200 - 2.8400 1.00 4165 196 0.1556 0.1677 REMARK 3 5 2.8400 - 2.6300 1.00 4152 209 0.1563 0.1848 REMARK 3 6 2.6300 - 2.4800 1.00 4087 259 0.1601 0.1934 REMARK 3 7 2.4800 - 2.3600 1.00 4110 197 0.1672 0.2074 REMARK 3 8 2.3600 - 2.2500 1.00 4095 209 0.1635 0.1892 REMARK 3 9 2.2500 - 2.1700 1.00 4085 214 0.1573 0.1929 REMARK 3 10 2.1700 - 2.0900 1.00 4114 216 0.1622 0.1949 REMARK 3 11 2.0900 - 2.0300 1.00 4124 200 0.1715 0.1902 REMARK 3 12 2.0300 - 1.9700 1.00 4051 218 0.1705 0.2143 REMARK 3 13 1.9700 - 1.9200 1.00 4127 204 0.1711 0.1863 REMARK 3 14 1.9200 - 1.8700 1.00 4067 225 0.1794 0.2130 REMARK 3 15 1.8700 - 1.8300 1.00 4050 228 0.1889 0.2089 REMARK 3 16 1.8300 - 1.7900 1.00 4084 210 0.1995 0.2408 REMARK 3 17 1.7900 - 1.7500 1.00 4054 230 0.1914 0.2289 REMARK 3 18 1.7500 - 1.7200 1.00 4090 211 0.1904 0.2030 REMARK 3 19 1.7200 - 1.6900 1.00 4065 207 0.1905 0.2097 REMARK 3 20 1.6900 - 1.6600 1.00 4076 214 0.1893 0.2342 REMARK 3 21 1.6600 - 1.6300 1.00 4078 209 0.1931 0.2232 REMARK 3 22 1.6300 - 1.6100 1.00 4041 208 0.1985 0.2449 REMARK 3 23 1.6100 - 1.5800 1.00 4081 221 0.2143 0.2361 REMARK 3 24 1.5800 - 1.5600 1.00 4035 207 0.2253 0.2746 REMARK 3 25 1.5600 - 1.5400 1.00 4068 215 0.2302 0.2388 REMARK 3 26 1.5400 - 1.5200 1.00 4026 224 0.2502 0.2665 REMARK 3 27 1.5200 - 1.5000 1.00 4006 255 0.2575 0.3037 REMARK 3 28 1.5000 - 1.4800 0.99 4023 213 0.2760 0.2943 REMARK 3 29 1.4800 - 1.4700 0.99 3999 217 0.2981 0.3035 REMARK 3 30 1.4700 - 1.4500 0.99 4028 215 0.3245 0.3251 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.176 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4458 REMARK 3 ANGLE : 0.842 6110 REMARK 3 CHIRALITY : 0.072 701 REMARK 3 PLANARITY : 0.008 822 REMARK 3 DIHEDRAL : 5.932 653 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300040910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 129382 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 48.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M SODIUM THIOCYANATE, 0.1M SODIUM REMARK 280 ACETATE PH4.0, 16% W/V PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.53250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.08050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.53250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.08050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 GLY A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 GLN A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 MET A 6 REMARK 465 SER A 7 REMARK 465 ARG A 8 REMARK 465 ASN A 9 REMARK 465 GLN A 10 REMARK 465 ASP A 11 REMARK 465 ALA A 12 REMARK 465 TYR A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 LYS A 16 REMARK 465 PRO A 294 REMARK 465 GLY A 295 REMARK 465 VAL A 296 REMARK 465 MET B -16 REMARK 465 GLY B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 GLN B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 465 GLY B 0 REMARK 465 GLY B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 ARG B 4 REMARK 465 GLY B 5 REMARK 465 MET B 6 REMARK 465 SER B 7 REMARK 465 ARG B 8 REMARK 465 ASN B 9 REMARK 465 GLN B 10 REMARK 465 ASP B 11 REMARK 465 ALA B 12 REMARK 465 TYR B 13 REMARK 465 ALA B 14 REMARK 465 GLU B 15 REMARK 465 LYS B 16 REMARK 465 PRO B 294 REMARK 465 GLY B 295 REMARK 465 VAL B 296 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN A 217 OE1 GLN B 212 2564 2.07 REMARK 500 O HOH B 574 O HOH B 736 3656 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 99 -84.30 -125.69 REMARK 500 THR A 99 -84.30 -131.66 REMARK 500 CYS A 279 165.66 179.69 REMARK 500 THR B 99 -71.82 -126.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 824 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 825 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A 826 DISTANCE = 9.51 ANGSTROMS REMARK 525 HOH B 879 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 880 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B 881 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH B 882 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH B 883 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 884 DISTANCE = 6.76 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 31 OE2 REMARK 620 2 GLU A 70 OE1 108.4 REMARK 620 3 HIS A 73 ND1 101.7 100.2 REMARK 620 4 ASP A 142 OD1 149.3 94.2 94.1 REMARK 620 5 ASP A 142 OD2 94.7 143.3 102.6 55.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 70 OE2 REMARK 620 2 GLU A 112 OE1 109.7 REMARK 620 3 GLU A 112 OE2 80.1 58.2 REMARK 620 4 ASP A 115 OD2 171.1 78.5 107.7 REMARK 620 5 ASP A 142 OD1 82.4 89.8 134.6 94.5 REMARK 620 6 HOH A 404 O 106.5 143.0 122.6 65.9 102.5 REMARK 620 7 HOH A 467 O 95.3 147.3 108.2 78.4 114.9 17.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 31 OE2 REMARK 620 2 GLU B 70 OE1 107.3 REMARK 620 3 HIS B 73 ND1 100.1 100.2 REMARK 620 4 ASP B 142 OD1 149.5 93.1 98.2 REMARK 620 5 ASP B 142 OD2 95.7 145.9 100.2 57.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 70 OE2 REMARK 620 2 GLU B 112 OE1 107.1 REMARK 620 3 GLU B 112 OE2 81.1 58.5 REMARK 620 4 ASP B 115 OD2 170.2 82.4 102.8 REMARK 620 5 ASP B 142 OD1 82.1 92.6 139.8 99.8 REMARK 620 6 HOH B 404 O 94.3 152.1 109.3 75.9 108.2 REMARK 620 N 1 2 3 4 5 DBREF1 8WAI A 0 296 UNP A0A1D1V463_RAMVA DBREF2 8WAI A A0A1D1V463 20 316 DBREF1 8WAI B 0 296 UNP A0A1D1V463_RAMVA DBREF2 8WAI B A0A1D1V463 20 316 SEQADV 8WAI MET A -16 UNP A0A1D1V46 INITIATING METHIONINE SEQADV 8WAI GLY A -15 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI SER A -14 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI SER A -13 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS A -12 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS A -11 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS A -10 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS A -9 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS A -8 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS A -7 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI GLU A -6 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI ASN A -5 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI LEU A -4 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI GLN A -3 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI PHE A -2 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI GLN A -1 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI MET B -16 UNP A0A1D1V46 INITIATING METHIONINE SEQADV 8WAI GLY B -15 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI SER B -14 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI SER B -13 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS B -12 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS B -11 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS B -10 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS B -9 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS B -8 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI HIS B -7 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI GLU B -6 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI ASN B -5 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI LEU B -4 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI GLN B -3 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI PHE B -2 UNP A0A1D1V46 EXPRESSION TAG SEQADV 8WAI GLN B -1 UNP A0A1D1V46 EXPRESSION TAG SEQRES 1 A 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 A 313 GLN PHE GLN GLY GLY GLY ASN ARG GLY MET SER ARG ASN SEQRES 3 A 313 GLN ASP ALA TYR ALA GLU LYS MET ASP MET THR LEU ASP SEQRES 4 A 313 ALA LEU ASN PHE LEU LEU GLY VAL GLU HIS LEU ALA SER SEQRES 5 A 313 ALA PHE TYR VAL GLN ALA VAL ASN ASN PHE THR ALA ASP SEQRES 6 A 313 ASP PHE LYS ALA ALA GLY LEU ALA GLN ARG ASP TYR ASP SEQRES 7 A 313 GLN PHE VAL GLY VAL ARG ASN ASN GLU VAL ASP HIS ARG SEQRES 8 A 313 ASP THR LEU ILE SER VAL ILE LYS SER LEU GLY GLY LYS SEQRES 9 A 313 PRO ASN PRO PRO CYS LYS TYR THR PHE PRO VAL THR ASP SEQRES 10 A 313 VAL ALA SER VAL LEU LYS VAL SER ARG THR LEU GLU ASN SEQRES 11 A 313 ALA ASP LYS PRO ALA TYR LEU GLY ALA LEU ARG ASP ILE SEQRES 12 A 313 LYS SER VAL GLU LEU ARG THR SER VAL GLN GLY ALA LEU SEQRES 13 A 313 SER GLY ASP SER ALA HIS ALA ALA PHE PHE ALA TYR LEU SEQRES 14 A 313 THR GLY LYS ALA PRO ALA PRO GLY PRO VAL ASP GLY PRO SEQRES 15 A 313 LEU THR GLN ARG HIS ILE ALA THR LEU ALA GLN ASP PHE SEQRES 16 A 313 ILE VAL SER CYS PRO TYR PRO ALA PRO LYS PRO PHE PRO SEQRES 17 A 313 LYS LEU THR LEU SER PRO GLN SER GLY PRO VAL GLY THR SEQRES 18 A 313 VAL VAL ALA THR THR CYS ALA GLN ASP VAL ASP THR ASN SEQRES 19 A 313 GLY VAL MET CYS ALA ILE ILE SER GLY ASN GLN GLY THR SEQRES 20 A 313 LEU MET GLN ARG PRO GLY GLN ALA LYS ASP GLY SER GLY SEQRES 21 A 313 ALA ALA THR CYS THR ILE PRO PRO GLY VAL LYS GLY ILE SEQRES 22 A 313 LEU PHE ILE ALA TRP VAL ARG GLY ARG ASP VAL LEU ASN SEQRES 23 A 313 VAL GLY VAL ASP ASP SER SER THR VAL CYS GLY PRO ASN SEQRES 24 A 313 TYR PHE LEU LEU SER ALA LEU GLY ASP ALA VAL PRO GLY SEQRES 25 A 313 VAL SEQRES 1 B 313 MET GLY SER SER HIS HIS HIS HIS HIS HIS GLU ASN LEU SEQRES 2 B 313 GLN PHE GLN GLY GLY GLY ASN ARG GLY MET SER ARG ASN SEQRES 3 B 313 GLN ASP ALA TYR ALA GLU LYS MET ASP MET THR LEU ASP SEQRES 4 B 313 ALA LEU ASN PHE LEU LEU GLY VAL GLU HIS LEU ALA SER SEQRES 5 B 313 ALA PHE TYR VAL GLN ALA VAL ASN ASN PHE THR ALA ASP SEQRES 6 B 313 ASP PHE LYS ALA ALA GLY LEU ALA GLN ARG ASP TYR ASP SEQRES 7 B 313 GLN PHE VAL GLY VAL ARG ASN ASN GLU VAL ASP HIS ARG SEQRES 8 B 313 ASP THR LEU ILE SER VAL ILE LYS SER LEU GLY GLY LYS SEQRES 9 B 313 PRO ASN PRO PRO CYS LYS TYR THR PHE PRO VAL THR ASP SEQRES 10 B 313 VAL ALA SER VAL LEU LYS VAL SER ARG THR LEU GLU ASN SEQRES 11 B 313 ALA ASP LYS PRO ALA TYR LEU GLY ALA LEU ARG ASP ILE SEQRES 12 B 313 LYS SER VAL GLU LEU ARG THR SER VAL GLN GLY ALA LEU SEQRES 13 B 313 SER GLY ASP SER ALA HIS ALA ALA PHE PHE ALA TYR LEU SEQRES 14 B 313 THR GLY LYS ALA PRO ALA PRO GLY PRO VAL ASP GLY PRO SEQRES 15 B 313 LEU THR GLN ARG HIS ILE ALA THR LEU ALA GLN ASP PHE SEQRES 16 B 313 ILE VAL SER CYS PRO TYR PRO ALA PRO LYS PRO PHE PRO SEQRES 17 B 313 LYS LEU THR LEU SER PRO GLN SER GLY PRO VAL GLY THR SEQRES 18 B 313 VAL VAL ALA THR THR CYS ALA GLN ASP VAL ASP THR ASN SEQRES 19 B 313 GLY VAL MET CYS ALA ILE ILE SER GLY ASN GLN GLY THR SEQRES 20 B 313 LEU MET GLN ARG PRO GLY GLN ALA LYS ASP GLY SER GLY SEQRES 21 B 313 ALA ALA THR CYS THR ILE PRO PRO GLY VAL LYS GLY ILE SEQRES 22 B 313 LEU PHE ILE ALA TRP VAL ARG GLY ARG ASP VAL LEU ASN SEQRES 23 B 313 VAL GLY VAL ASP ASP SER SER THR VAL CYS GLY PRO ASN SEQRES 24 B 313 TYR PHE LEU LEU SER ALA LEU GLY ASP ALA VAL PRO GLY SEQRES 25 B 313 VAL HET ZN A 301 1 HET ZN A 302 1 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET ZN B 301 1 HET ZN B 302 1 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 EDO 7(C2 H6 O2) FORMUL 14 HOH *910(H2 O) HELIX 1 AA1 MET A 19 PHE A 45 1 27 HELIX 2 AA2 THR A 46 ALA A 53 1 8 HELIX 3 AA3 ALA A 56 LEU A 84 1 29 HELIX 4 AA4 ASP A 100 ARG A 124 1 25 HELIX 5 AA5 SER A 128 THR A 153 1 26 HELIX 6 AA6 THR A 167 GLN A 176 1 10 HELIX 7 AA7 ASN A 269 ASP A 273 5 5 HELIX 8 AA8 MET B 19 PHE B 45 1 27 HELIX 9 AA9 THR B 46 ALA B 53 1 8 HELIX 10 AB1 ALA B 56 LEU B 84 1 29 HELIX 11 AB2 ASP B 100 LEU B 123 1 24 HELIX 12 AB3 ARG B 124 ILE B 126 5 3 HELIX 13 AB4 SER B 128 THR B 153 1 26 HELIX 14 AB5 THR B 167 GLN B 176 1 10 HELIX 15 AB6 ASN B 269 ASP B 273 5 5 SHEET 1 AA1 2 LYS A 93 TYR A 94 0 SHEET 2 AA1 2 ILE A 179 SER A 181 -1 O VAL A 180 N LYS A 93 SHEET 1 AA2 4 LEU A 193 SER A 196 0 SHEET 2 AA2 4 VAL A 205 CYS A 210 -1 O THR A 209 N THR A 194 SHEET 3 AA2 4 ALA A 245 THR A 248 -1 O CYS A 247 N VAL A 206 SHEET 4 AA2 4 GLY A 236 GLN A 237 -1 N GLY A 236 O THR A 246 SHEET 1 AA3 5 SER A 199 GLY A 200 0 SHEET 2 AA3 5 THR A 277 LEU A 286 1 O LEU A 285 N GLY A 200 SHEET 3 AA3 5 LEU A 257 ARG A 263 -1 N TRP A 261 O VAL A 278 SHEET 4 AA3 5 VAL A 219 SER A 225 -1 N ILE A 224 O PHE A 258 SHEET 5 AA3 5 GLY A 229 GLN A 233 -1 O GLN A 233 N CYS A 221 SHEET 1 AA4 2 LYS B 93 TYR B 94 0 SHEET 2 AA4 2 ILE B 179 SER B 181 -1 O SER B 181 N LYS B 93 SHEET 1 AA5 4 LEU B 193 SER B 196 0 SHEET 2 AA5 4 VAL B 205 CYS B 210 -1 O THR B 209 N THR B 194 SHEET 3 AA5 4 ALA B 245 THR B 248 -1 O ALA B 245 N THR B 208 SHEET 4 AA5 4 GLY B 236 GLN B 237 -1 N GLY B 236 O THR B 246 SHEET 1 AA6 5 SER B 199 GLY B 200 0 SHEET 2 AA6 5 THR B 277 LEU B 286 1 O LEU B 285 N GLY B 200 SHEET 3 AA6 5 LEU B 257 ARG B 263 -1 N TRP B 261 O VAL B 278 SHEET 4 AA6 5 VAL B 219 SER B 225 -1 N ILE B 224 O PHE B 258 SHEET 5 AA6 5 GLY B 229 GLN B 233 -1 O GLN B 233 N CYS B 221 SSBOND 1 CYS A 92 CYS A 182 1555 1555 2.06 SSBOND 2 CYS A 210 CYS A 279 1555 1555 2.07 SSBOND 3 CYS A 221 CYS A 247 1555 1555 2.04 SSBOND 4 CYS B 92 CYS B 182 1555 1555 2.07 SSBOND 5 CYS B 210 CYS B 279 1555 1555 2.08 SSBOND 6 CYS B 221 CYS B 247 1555 1555 2.05 LINK OE2 GLU A 31 ZN ZN A 301 1555 1555 2.01 LINK OE1 GLU A 70 ZN ZN A 301 1555 1555 1.96 LINK OE2 GLU A 70 ZN ZN A 302 1555 1555 1.75 LINK ND1 HIS A 73 ZN ZN A 301 1555 1555 2.12 LINK OE1 GLU A 112 ZN ZN A 302 1555 1555 2.04 LINK OE2 GLU A 112 ZN ZN A 302 1555 1555 2.40 LINK OD2AASP A 115 ZN ZN A 302 1555 1555 2.14 LINK OD1 ASP A 142 ZN ZN A 301 1555 1555 2.39 LINK OD2 ASP A 142 ZN ZN A 301 1555 1555 2.21 LINK OD1 ASP A 142 ZN ZN A 302 1555 1555 2.67 LINK ZN ZN A 302 O BHOH A 404 1555 1555 1.98 LINK ZN ZN A 302 O AHOH A 467 1555 1555 2.12 LINK OE2 GLU B 31 ZN ZN B 302 1555 1555 2.01 LINK OE2 GLU B 70 ZN ZN B 301 1555 1555 1.78 LINK OE1 GLU B 70 ZN ZN B 302 1555 1555 1.99 LINK ND1 HIS B 73 ZN ZN B 302 1555 1555 2.12 LINK OE1 GLU B 112 ZN ZN B 301 1555 1555 2.01 LINK OE2 GLU B 112 ZN ZN B 301 1555 1555 2.40 LINK OD2 ASP B 115 ZN ZN B 301 1555 1555 1.92 LINK OD1 ASP B 142 ZN ZN B 301 1555 1555 2.50 LINK OD1 ASP B 142 ZN ZN B 302 1555 1555 2.28 LINK OD2 ASP B 142 ZN ZN B 302 1555 1555 2.26 LINK ZN ZN B 301 O HOH B 404 1555 1555 2.04 CISPEP 1 SER A 196 PRO A 197 0 -1.24 CISPEP 2 GLY A 280 PRO A 281 0 7.93 CISPEP 3 SER B 196 PRO B 197 0 -2.26 CISPEP 4 SER B 196 PRO B 197 0 -2.47 CISPEP 5 GLY B 280 PRO B 281 0 8.45 CRYST1 60.960 82.161 145.065 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016404 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006893 0.00000