HEADER CELL ADHESION 09-SEP-23 8WB8 TITLE CRYSTAL STRUCTURE OF THE SHAFT PILIN LRPA FROM LIGILACTOBACILLUS TITLE 2 RUMINIS - ORTHORHOMBIC FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPXTG-MOTIF CELL WALL ANCHOR DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SHAFT PILIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LIGILACTOBACILLUS RUMINIS ATCC 25644; SOURCE 3 ORGANISM_TAXID: 525362; SOURCE 4 ATCC: 25644; SOURCE 5 GENE: HMPREF0542_11612; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS KEYWDS BACKBONE PILIN, ISOPEPTIDE BOND, PILI, GUT BACTERIA, PROBIOTIC, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.PRAJAPATI,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN REVDAT 2 17-JUL-24 8WB8 1 JRNL REVDAT 1 10-JUL-24 8WB8 0 JRNL AUTH A.PRAJAPATI,A.PALVA,I.VON OSSOWSKI,V.KRISHNAN JRNL TITL THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF THE JRNL TITL 2 BACKBONE PILIN LRPA REVEALS A NEW CLOSURE-AND-TWIST MOTION JRNL TITL 3 FOR ASSEMBLING DYNAMIC PILI IN LIGILACTOBACILLUS RUMINIS. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 80 474 2024 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 38935340 JRNL DOI 10.1107/S2059798324005114 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 67.5 REMARK 3 NUMBER OF REFLECTIONS : 14652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 753 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 217 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.3000 REMARK 3 BIN FREE R VALUE SET COUNT : 15 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3022 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.639 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.318 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.213 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.586 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.884 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3076 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2914 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4170 ; 1.253 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6745 ; 0.387 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 6.940 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 2 ; 3.012 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 522 ;12.474 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 487 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3537 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 627 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1611 ; 2.005 ; 3.086 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1611 ; 2.005 ; 3.086 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2009 ; 3.182 ; 5.542 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2010 ; 3.182 ; 5.543 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1465 ; 2.378 ; 3.331 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1466 ; 2.377 ; 3.332 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2161 ; 3.940 ; 6.008 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3076 ; 5.239 ;30.500 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3076 ; 5.238 ;30.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 207 REMARK 3 ORIGIN FOR THE GROUP (A): 12.5303 28.2508 -25.8461 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0967 REMARK 3 T33: 0.1492 T12: -0.0103 REMARK 3 T13: 0.0108 T23: -0.0968 REMARK 3 L TENSOR REMARK 3 L11: 1.9124 L22: 2.2263 REMARK 3 L33: 3.6681 L12: 0.0299 REMARK 3 L13: 0.5567 L23: 1.6580 REMARK 3 S TENSOR REMARK 3 S11: 0.0246 S12: -0.0352 S13: -0.0926 REMARK 3 S21: 0.1396 S22: -0.1491 S23: 0.0100 REMARK 3 S31: 0.3227 S32: -0.0667 S33: 0.1246 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 208 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4881 -9.8865 -30.0825 REMARK 3 T TENSOR REMARK 3 T11: 0.1635 T22: 0.0272 REMARK 3 T33: 0.0297 T12: -0.0199 REMARK 3 T13: 0.0172 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.8618 L22: 1.2741 REMARK 3 L33: 4.9138 L12: 0.0435 REMARK 3 L13: -0.0758 L23: -1.3640 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.1081 S13: 0.1254 REMARK 3 S21: 0.0195 S22: -0.0719 S23: -0.1042 REMARK 3 S31: -0.4072 S32: 0.2490 S33: 0.0630 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 344 A 472 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8341 -30.0077 0.7134 REMARK 3 T TENSOR REMARK 3 T11: 0.0098 T22: 0.0388 REMARK 3 T33: 0.0428 T12: -0.0034 REMARK 3 T13: -0.0120 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 0.8595 L22: 2.9532 REMARK 3 L33: 3.6998 L12: -0.6842 REMARK 3 L13: 0.5794 L23: -1.7166 REMARK 3 S TENSOR REMARK 3 S11: 0.0465 S12: -0.1275 S13: -0.1793 REMARK 3 S21: -0.0527 S22: 0.0281 S23: 0.1083 REMARK 3 S31: -0.0962 S32: -0.1447 S33: -0.0745 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8WB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300040866. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.972423 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AUTOPROC REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15406 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 58.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.89900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, PH 4.5, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.20800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 82.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.20800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 82.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 26 REMARK 465 GLY A 27 REMARK 465 ARG A 28 REMARK 465 ASP A 29 REMARK 465 PRO A 30 REMARK 465 ASN A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 SER A 34 REMARK 465 GLU A 35 REMARK 465 THR A 36 REMARK 465 SER A 37 REMARK 465 PHE A 50 REMARK 465 ASP A 51 REMARK 465 LYS A 52 REMARK 465 SER A 53 REMARK 465 LEU A 54 REMARK 465 PRO A 55 REMARK 465 SER A 56 REMARK 465 ASP A 57 REMARK 465 LYS A 58 REMARK 465 ILE A 59 REMARK 465 ASP A 60 REMARK 465 ASN A 61 REMARK 465 SER A 62 REMARK 465 LYS A 63 REMARK 465 SER A 64 REMARK 465 GLN A 65 REMARK 465 ASP A 66 REMARK 465 GLU A 67 REMARK 465 ILE A 68 REMARK 465 ASN A 69 REMARK 465 ALA A 70 REMARK 465 TRP A 71 REMARK 465 LEU A 72 REMARK 465 THR A 73 REMARK 465 LYS A 74 REMARK 465 ASN A 75 REMARK 465 ASN A 76 REMARK 465 PRO A 170 REMARK 465 ALA A 171 REMARK 465 ASN A 172 REMARK 465 ILE A 173 REMARK 465 THR A 174 REMARK 465 LEU A 473 REMARK 465 GLU A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 465 HIS A 477 REMARK 465 HIS A 478 REMARK 465 HIS A 479 REMARK 465 HIS A 480 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 104 CG OD1 OD2 REMARK 470 SER A 108 OG REMARK 470 VAL A 205 CG1 CG2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 TRP A 238 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 238 CZ3 CH2 REMARK 470 ASN A 322 ND2 REMARK 470 ASN A 330 CG OD1 ND2 REMARK 470 HIS A 334 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 464 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 350 CG ASN A 464 1.33 REMARK 500 NZ LYS A 211 CG ASN A 322 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 220 64.37 -114.13 REMARK 500 ASN A 239 42.84 -91.66 REMARK 500 ALA A 294 1.24 -64.26 REMARK 500 ASP A 329 -105.20 48.85 REMARK 500 ASN A 355 88.06 -159.03 REMARK 500 ASN A 395 64.92 38.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8KB2 RELATED DB: PDB REMARK 900 8KB2 CONTAINS SAME PROTEIN OF TRUNCATED FORM CONTAINING MIDDLE AND REMARK 900 C-TERMINAL DOMAINS - NAI DERIVATIVE REMARK 900 RELATED ID: 8KCL RELATED DB: PDB REMARK 900 8KCL CONTAINS SAME PROTEIN OF TRUNCATED FORM CONTAINING MIDDLE AND REMARK 900 C-TERMINAL DOMAINS REMARK 900 RELATED ID: 8KG4 RELATED DB: PDB REMARK 900 8KG4 CONTAINS SAME PROTEIN OF TRUNCATED FORM CONTAINING MIDDLE AND REMARK 900 C-TERMINAL DOMAINS REMARK 900 RELATED ID: 8W5B RELATED DB: PDB REMARK 900 8W5B CONTAINS THE SAME PROTEIN IN P31 SPACE GROUP DBREF 8WB8 A 35 472 UNP E7FRT5 E7FRT5_9LACO 35 472 SEQADV 8WB8 MET A 26 UNP E7FRT5 INITIATING METHIONINE SEQADV 8WB8 GLY A 27 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 ARG A 28 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 ASP A 29 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 PRO A 30 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 ASN A 31 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 SER A 32 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 SER A 33 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 SER A 34 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 LEU A 473 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 GLU A 474 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 HIS A 475 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 HIS A 476 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 HIS A 477 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 HIS A 478 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 HIS A 479 UNP E7FRT5 EXPRESSION TAG SEQADV 8WB8 HIS A 480 UNP E7FRT5 EXPRESSION TAG SEQRES 1 A 455 MET GLY ARG ASP PRO ASN SER SER SER GLU THR SER THR SEQRES 2 A 455 GLU THR ALA THR VAL THR LEU HIS LYS TYR VAL PHE ASP SEQRES 3 A 455 LYS SER LEU PRO SER ASP LYS ILE ASP ASN SER LYS SER SEQRES 4 A 455 GLN ASP GLU ILE ASN ALA TRP LEU THR LYS ASN ASN ALA SEQRES 5 A 455 GLU ALA LEU ASP GLY VAL GLU PHE THR ALA TYR ASP VAL SEQRES 6 A 455 THR SER GLU TYR ALA ASP ALA TYR LYS THR ALA THR GLY SEQRES 7 A 455 ASP LYS ASN GLU SER PRO ALA ASP ALA ALA LYS THR ALA SEQRES 8 A 455 SER ALA ALA VAL ALA LYS LYS ALA ASP ALA LEU GLN LYS SEQRES 9 A 455 THR ALA THR VAL VAL GLY LYS GLN THR THR ALA ASN GLY SEQRES 10 A 455 GLY LEU ALA SER PHE ALA ASN LEU PRO LEU ARG ASP ALA SEQRES 11 A 455 ASN GLY ASN TYR LYS ALA TYR LEU PHE ALA GLU THR ASP SEQRES 12 A 455 ALA PRO ALA ASN ILE THR GLN LYS ALA GLU PRO PHE VAL SEQRES 13 A 455 LEU ALA MET PRO ILE TYR GLY ALA ASP GLY LYS THR VAL SEQRES 14 A 455 GLN LYS SER ILE ASN ILE TYR PRO LYS ASN VAL LYS GLN SEQRES 15 A 455 SER ASP LYS LYS THR LEU ASN ASP ASN ARG SER HIS HIS SEQRES 16 A 455 ASP PHE THR ALA GLY GLU LYS ILE ASN TYR SER ILE GLU SEQRES 17 A 455 THR VAL VAL PRO TRP ASN ILE ALA ASN LYS LYS VAL TYR SEQRES 18 A 455 THR ILE THR ASP ASN PRO SER LYS GLY LEU ILE MET ASP SEQRES 19 A 455 ALA ASP THR ILE GLN ILE GLU GLY LEU ALA SER ASN LYS SEQRES 20 A 455 TYR THR VAL LYS LYS ASN ALA ASP ASN GLY PHE THR ILE SEQRES 21 A 455 THR ILE PRO ALA ALA ASN LEU ALA ALA PHE ALA GLY LYS SEQRES 22 A 455 THR LEU LYS THR THR VAL LYS GLY HIS LEU SER ILE GLU SEQRES 23 A 455 ASP LEU THR LEU ILE ASP THR GLY ILE PRO ASN LYS ALA SEQRES 24 A 455 THR ALA LYS VAL ASP ASN GLU ALA HIS HIS GLU VAL LYS SEQRES 25 A 455 SER GLU GLU VAL PHE THR GLY GLY LYS LYS PHE VAL LYS SEQRES 26 A 455 VAL ASP GLY SER ASN GLN SER LYS THR LEU ALA GLY ALA SEQRES 27 A 455 GLN PHE GLN LEU VAL ILE VAL LYS ASN GLY GLN VAL VAL SEQRES 28 A 455 LYS TYR ALA HIS GLY ASN GLU LYS ASP GLY TYR THR PHE SEQRES 29 A 455 ASP THR ASN ASN THR ASN VAL ALA THR LYS THR THR GLY SEQRES 30 A 455 GLU ASN GLY GLN PHE GLU PHE ALA GLY LEU LYS TYR SER SEQRES 31 A 455 GLU SER LEU GLU ALA GLY GLU SER TYR ALA VAL LYS GLU SEQRES 32 A 455 VAL LYS ALA PRO THR GLY TYR ASP LEU LEU LYS ASP PRO SEQRES 33 A 455 VAL LEU PHE THR VAL THR LYS ASP SER TYR LYS THR VAL SEQRES 34 A 455 GLN ALA ALA ASP GLY GLN LYS ILE SER ASN THR LYS LYS SEQRES 35 A 455 GLY GLY PHE LEU PRO LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 2 HOH *20(H2 O) HELIX 1 AA1 VAL A 90 GLY A 103 1 14 HELIX 2 AA2 ALA A 110 LYS A 122 1 13 HELIX 3 AA3 LYS A 123 LYS A 129 1 7 HELIX 4 AA4 ASN A 239 LYS A 243 5 5 HELIX 5 AA5 ALA A 269 TYR A 273 5 5 HELIX 6 AA6 ALA A 290 ALA A 296B 5 7 HELIX 7 AA7 ASP A 312 ILE A 316 5 5 HELIX 8 AA8 TYR A 414 LEU A 418 5 5 HELIX 9 AA9 GLN A 455 GLY A 459 5 5 SHEET 1 AA1 3 LEU A 144 PRO A 151 0 SHEET 2 AA1 3 THR A 40 HIS A 46 -1 N VAL A 43 O PHE A 147 SHEET 3 AA1 3 SER A 197 ILE A 200 1 O ILE A 198 N THR A 42 SHEET 1 AA2 4 VAL A 133 THR A 138 0 SHEET 2 AA2 4 GLU A 84 ASP A 89 -1 N PHE A 85 O GLN A 137 SHEET 3 AA2 4 ALA A 161 ASP A 168 -1 O LEU A 163 N TYR A 88 SHEET 4 AA2 4 PHE A 180 ALA A 183 -1 O LEU A 182 N TYR A 162 SHEET 1 AA3 2 LYS A 176 ALA A 177 0 SHEET 2 AA3 2 ASN A 204 VAL A 205 -1 O VAL A 205 N LYS A 176 SHEET 1 AA4 4 LYS A 210 ASN A 214 0 SHEET 2 AA4 4 ILE A 228 VAL A 235 -1 O ASN A 229 N ASN A 214 SHEET 3 AA4 4 THR A 299 LEU A 308 -1 O LEU A 300 N THR A 234 SHEET 4 AA4 4 LEU A 256 ILE A 265 -1 N ILE A 257 O HIS A 307 SHEET 1 AA5 5 THR A 274 LYS A 277 0 SHEET 2 AA5 5 PHE A 283 PRO A 288 -1 O THR A 286 N THR A 274 SHEET 3 AA5 5 VAL A 245 ASP A 250 -1 N ASP A 250 O PHE A 283 SHEET 4 AA5 5 LYS A 323 VAL A 328 -1 O LYS A 327 N THR A 247 SHEET 5 AA5 5 GLU A 331 ALA A 332 -1 O GLU A 331 N VAL A 328 SHEET 1 AA6 5 THR A 274 LYS A 277 0 SHEET 2 AA6 5 PHE A 283 PRO A 288 -1 O THR A 286 N THR A 274 SHEET 3 AA6 5 VAL A 245 ASP A 250 -1 N ASP A 250 O PHE A 283 SHEET 4 AA6 5 LYS A 323 VAL A 328 -1 O LYS A 327 N THR A 247 SHEET 5 AA6 5 VAL A 336 LYS A 337 -1 O VAL A 336 N ALA A 324 SHEET 1 AA7 3 ASN A 355 THR A 359 0 SHEET 2 AA7 3 GLY A 344 ASP A 352 -1 N ASP A 352 O LYS A 358 SHEET 3 AA7 3 GLN A 406 LEU A 412 -1 O PHE A 407 N PHE A 348 SHEET 1 AA8 3 ASN A 355 THR A 359 0 SHEET 2 AA8 3 GLY A 344 ASP A 352 -1 N ASP A 352 O LYS A 358 SHEET 3 AA8 3 GLN A 460 ASN A 464 1 O ILE A 462 N VAL A 351 SHEET 1 AA9 4 GLY A 386 ASP A 390 0 SHEET 2 AA9 4 GLN A 374 ASN A 382 -1 N TYR A 378 O ASP A 390 SHEET 3 AA9 4 GLN A 364 LYS A 371 -1 N ILE A 369 O VAL A 376 SHEET 4 AA9 4 THR A 398 THR A 400 -1 O LYS A 399 N PHE A 365 SHEET 1 AB1 5 GLY A 386 ASP A 390 0 SHEET 2 AB1 5 GLN A 374 ASN A 382 -1 N TYR A 378 O ASP A 390 SHEET 3 AB1 5 GLN A 364 LYS A 371 -1 N ILE A 369 O VAL A 376 SHEET 4 AB1 5 GLU A 422 LYS A 430 -1 O SER A 423 N VAL A 370 SHEET 5 AB1 5 VAL A 442 PHE A 444 -1 O VAL A 442 N VAL A 426 CISPEP 1 MET A 184 PRO A 185 0 -10.79 CRYST1 62.416 165.240 47.928 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016022 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006052 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020865 0.00000