HEADER TOXIN 18-SEP-23 8WEM TITLE BACTEROIDES FRAGILIS TOXIN 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRAGILYSIN; COMPND 3 CHAIN: C, A; COMPND 4 SYNONYM: ENTEROTOXIN; COMPND 5 EC: 3.4.24.74; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 817; SOURCE 4 GENE: BTFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACTEROIDES FRAGILIS, BFT1, METALLOENZYME, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.GUO,Y.WEN REVDAT 1 25-SEP-24 8WEM 0 JRNL AUTH Y.GUO,Y.WEN JRNL TITL BACTEROIDES FRAGILIS TOXIN 1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4092 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 171231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.190 REMARK 3 FREE R VALUE TEST SET COUNT : 3757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.3700 - 5.4000 1.00 6207 145 0.1582 0.1859 REMARK 3 2 5.4000 - 4.2900 1.00 6211 144 0.1299 0.1420 REMARK 3 3 4.2900 - 3.7500 1.00 6197 137 0.1379 0.1729 REMARK 3 4 3.7500 - 3.4000 1.00 6248 137 0.1561 0.1945 REMARK 3 5 3.4000 - 3.1600 1.00 6174 141 0.1655 0.1917 REMARK 3 6 3.1600 - 2.9700 1.00 6209 140 0.1788 0.1881 REMARK 3 7 2.9700 - 2.8200 1.00 6224 142 0.1864 0.2006 REMARK 3 8 2.8200 - 2.7000 1.00 6234 134 0.1840 0.2336 REMARK 3 9 2.7000 - 2.6000 1.00 6189 138 0.1818 0.2141 REMARK 3 10 2.6000 - 2.5100 1.00 6195 138 0.1861 0.2226 REMARK 3 11 2.5100 - 2.4300 1.00 6194 136 0.1845 0.2488 REMARK 3 12 2.4300 - 2.3600 1.00 6224 139 0.1845 0.2356 REMARK 3 13 2.3600 - 2.3000 1.00 6210 142 0.1778 0.1993 REMARK 3 14 2.3000 - 2.2400 1.00 6214 136 0.1851 0.2445 REMARK 3 15 2.2400 - 2.1900 1.00 6231 141 0.1936 0.2143 REMARK 3 16 2.1900 - 2.1400 1.00 6232 137 0.1820 0.2364 REMARK 3 17 2.1400 - 2.1000 1.00 6163 139 0.1922 0.1940 REMARK 3 18 2.1000 - 2.0600 1.00 6188 138 0.2008 0.2643 REMARK 3 19 2.0600 - 2.0300 1.00 6173 140 0.2071 0.1908 REMARK 3 20 2.0300 - 1.9900 1.00 6251 144 0.2288 0.2453 REMARK 3 21 1.9900 - 1.9600 1.00 6135 139 0.2470 0.2647 REMARK 3 22 1.9600 - 1.9300 1.00 6215 141 0.2902 0.3188 REMARK 3 23 1.9300 - 1.9000 1.00 6247 138 0.3026 0.2989 REMARK 3 24 1.9000 - 1.8700 1.00 6163 135 0.3016 0.3083 REMARK 3 25 1.8700 - 1.8500 1.00 6213 139 0.3195 0.3375 REMARK 3 26 1.8500 - 1.8200 1.00 6198 138 0.3428 0.3168 REMARK 3 27 1.8200 - 1.8000 1.00 6135 139 0.4209 0.4208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.313 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5675 REMARK 3 ANGLE : 0.872 7693 REMARK 3 CHIRALITY : 0.058 843 REMARK 3 PLANARITY : 0.006 996 REMARK 3 DIHEDRAL : 6.124 769 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -23.4410 37.9608 -32.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.3078 T22: 0.2437 REMARK 3 T33: 0.3008 T12: 0.0108 REMARK 3 T13: -0.0082 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.5420 L22: 0.3525 REMARK 3 L33: 1.0111 L12: 0.1951 REMARK 3 L13: -0.4287 L23: -0.3038 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: -0.0014 S13: -0.0017 REMARK 3 S21: -0.0385 S22: -0.0110 S23: 0.0066 REMARK 3 S31: -0.0709 S32: -0.0404 S33: -0.0009 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WEM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 21-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300041137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 171231 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.370 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM MALONATE PH 5.0, 20% W/V REMARK 280 POLYETHYLENE GLYCOL 3350, 32 MG ML-1, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 140.03400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.33600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.33600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 70.01700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.33600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.33600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 210.05100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.33600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.33600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 70.01700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.33600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.33600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 210.05100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 140.03400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ASN C 3 REMARK 465 VAL C 4 REMARK 465 LYS C 5 REMARK 465 LEU C 6 REMARK 465 LEU C 7 REMARK 465 LEU C 8 REMARK 465 MET C 9 REMARK 465 LEU C 10 REMARK 465 GLY C 11 REMARK 465 THR C 12 REMARK 465 ALA C 13 REMARK 465 ALA C 14 REMARK 465 LEU C 15 REMARK 465 LEU C 16 REMARK 465 ALA C 17 REMARK 465 ALA C 18 REMARK 465 CYS C 19 REMARK 465 SER C 20 REMARK 465 ASN C 21 REMARK 465 GLU C 22 REMARK 465 ALA C 23 REMARK 465 ASP C 24 REMARK 465 SER C 25 REMARK 465 LEU C 26 REMARK 465 THR C 27 REMARK 465 THR C 28 REMARK 465 SER C 29 REMARK 465 ILE C 30 REMARK 465 ASP C 31 REMARK 465 ALA C 32 REMARK 465 PRO C 33 REMARK 465 ARG C 162 REMARK 465 THR C 163 REMARK 465 ARG C 164 REMARK 465 SER C 165 REMARK 465 ALA C 166 REMARK 465 GLN C 200 REMARK 465 VAL C 201 REMARK 465 PRO C 202 REMARK 465 HIS C 203 REMARK 465 GLY C 204 REMARK 465 ILE C 205 REMARK 465 THR C 206 REMARK 465 GLU C 207 REMARK 465 SER C 208 REMARK 465 GLN C 209 REMARK 465 THR C 210 REMARK 465 ARG C 211 REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 ASN A 3 REMARK 465 VAL A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 MET A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 THR A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 CYS A 19 REMARK 465 SER A 20 REMARK 465 ASN A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 SER A 25 REMARK 465 LEU A 26 REMARK 465 THR A 27 REMARK 465 THR A 28 REMARK 465 SER A 29 REMARK 465 ILE A 30 REMARK 465 ASP A 31 REMARK 465 ALA A 32 REMARK 465 VAL A 201 REMARK 465 PRO A 202 REMARK 465 HIS A 203 REMARK 465 GLY A 204 REMARK 465 ILE A 205 REMARK 465 THR A 206 REMARK 465 GLU A 207 REMARK 465 SER A 208 REMARK 465 GLN A 209 REMARK 465 THR A 210 REMARK 465 ARG A 211 REMARK 465 ALA A 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG C 147 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 149 CG1 CG2 CD1 REMARK 470 ASN C 150 CG OD1 ND2 REMARK 470 LYS C 152 CG CD CE NZ REMARK 470 LYS C 168 CG CD CE NZ REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 149 CG1 CG2 CD1 REMARK 470 ASN A 150 CG OD1 ND2 REMARK 470 ARG A 162 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 379 O HOH A 501 1.92 REMARK 500 O HOH C 675 O HOH C 735 1.93 REMARK 500 O HOH A 516 O HOH A 530 1.97 REMARK 500 O HOH A 693 O HOH A 756 1.98 REMARK 500 OH TYR C 195 O HOH C 501 1.98 REMARK 500 O HOH C 690 O HOH C 767 1.98 REMARK 500 O HOH C 708 O HOH C 738 2.02 REMARK 500 O HOH A 706 O HOH A 717 2.04 REMARK 500 O HOH C 626 O HOH C 712 2.05 REMARK 500 O HOH C 682 O HOH C 759 2.08 REMARK 500 O HOH C 661 O HOH C 732 2.09 REMARK 500 O HOH C 738 O HOH C 743 2.10 REMARK 500 OD1 ASP C 57 NZ LYS C 79 2.13 REMARK 500 O HOH C 543 O HOH C 703 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER C 42 14.97 -150.42 REMARK 500 ILE C 149 -3.29 65.67 REMARK 500 ASN C 193 42.12 70.12 REMARK 500 SER A 42 25.73 -148.04 REMARK 500 SER A 100 56.73 38.35 REMARK 500 THR A 146 -127.23 -77.68 REMARK 500 ARG A 147 121.91 133.57 REMARK 500 ARG A 164 -163.10 -105.80 REMARK 500 SER A 165 -163.86 58.15 REMARK 500 TYR A 342 63.73 -119.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 786 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH C 787 DISTANCE = 6.67 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 194 OD1 REMARK 620 2 ASP C 194 OD2 56.9 REMARK 620 3 HIS C 348 NE2 146.4 90.6 REMARK 620 4 HIS C 352 NE2 97.5 101.6 97.6 REMARK 620 5 HIS C 358 NE2 99.4 148.0 106.2 102.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 194 OD1 REMARK 620 2 ASP A 194 OD2 54.4 REMARK 620 3 HIS A 348 NE2 138.0 84.3 REMARK 620 4 HIS A 352 NE2 96.4 104.6 101.6 REMARK 620 5 HIS A 358 NE2 101.7 140.8 107.7 109.0 REMARK 620 N 1 2 3 4 DBREF 8WEM C 1 397 UNP P54355 ENTM_BACFG 9 405 DBREF 8WEM A 1 397 UNP P54355 ENTM_BACFG 9 405 SEQRES 1 C 397 MET LYS ASN VAL LYS LEU LEU LEU MET LEU GLY THR ALA SEQRES 2 C 397 ALA LEU LEU ALA ALA CYS SER ASN GLU ALA ASP SER LEU SEQRES 3 C 397 THR THR SER ILE ASP ALA PRO VAL THR ALA SER ILE ASP SEQRES 4 C 397 LEU GLN SER VAL SER TYR THR ASP LEU ALA THR GLN LEU SEQRES 5 C 397 ASN ASP VAL SER ASP PHE GLY LYS MET ILE ILE LEU LYS SEQRES 6 C 397 ASP ASN GLY PHE ASN ARG GLN VAL HIS VAL SER MET ASP SEQRES 7 C 397 LYS ARG THR LYS ILE GLN LEU ASP ASN GLU ASN VAL ARG SEQRES 8 C 397 LEU PHE ASN GLY ARG ASP LYS ASP SER THR SER PHE ILE SEQRES 9 C 397 LEU GLY ASP GLU PHE ALA VAL LEU ARG PHE TYR ARG ASN SEQRES 10 C 397 GLY GLU SER ILE SER TYR ILE ALA TYR LYS GLU ALA GLN SEQRES 11 C 397 MET MET ASN GLU ILE ALA GLU PHE TYR ALA ALA PRO PHE SEQRES 12 C 397 LYS LYS THR ARG ALA ILE ASN GLU LYS GLU ALA PHE GLU SEQRES 13 C 397 CYS ILE TYR ASP SER ARG THR ARG SER ALA GLY LYS ASP SEQRES 14 C 397 ILE VAL SER VAL LYS ILE ASN ILE ASP LYS ALA LYS LYS SEQRES 15 C 397 ILE LEU ASN LEU PRO GLU CYS ASP TYR ILE ASN ASP TYR SEQRES 16 C 397 ILE LYS THR PRO GLN VAL PRO HIS GLY ILE THR GLU SER SEQRES 17 C 397 GLN THR ARG ALA VAL PRO SER GLU PRO LYS THR VAL TYR SEQRES 18 C 397 VAL ILE CYS LEU ARG GLU ASN GLY SER THR ILE TYR PRO SEQRES 19 C 397 ASN GLU VAL SER ALA GLN MET GLN ASP ALA ALA ASN SER SEQRES 20 C 397 VAL TYR ALA VAL HIS GLY LEU LYS ARG TYR VAL ASN PHE SEQRES 21 C 397 HIS PHE VAL LEU TYR THR THR GLU TYR SER CYS PRO SER SEQRES 22 C 397 GLY ASP ALA LYS GLU GLY LEU GLU GLY PHE THR ALA SER SEQRES 23 C 397 LEU LYS SER ASN PRO LYS ALA GLU GLY TYR ASP ASP GLN SEQRES 24 C 397 ILE TYR PHE LEU ILE ARG TRP GLY THR TRP ASP ASN LYS SEQRES 25 C 397 ILE LEU GLY MET SER TRP PHE ASN SER TYR ASN VAL ASN SEQRES 26 C 397 THR ALA SER ASP PHE GLU ALA SER GLY MET SER THR THR SEQRES 27 C 397 GLN LEU MET TYR PRO GLY VAL MET ALA HIS GLU LEU GLY SEQRES 28 C 397 HIS ILE LEU GLY ALA GLU HIS THR ASP ASN SER LYS ASP SEQRES 29 C 397 LEU MET TYR ALA THR PHE THR GLY TYR LEU SER HIS LEU SEQRES 30 C 397 SER GLU LYS ASN MET ASP ILE ILE ALA LYS ASN LEU GLY SEQRES 31 C 397 TRP GLU ALA ALA ASP GLY ASP SEQRES 1 A 397 MET LYS ASN VAL LYS LEU LEU LEU MET LEU GLY THR ALA SEQRES 2 A 397 ALA LEU LEU ALA ALA CYS SER ASN GLU ALA ASP SER LEU SEQRES 3 A 397 THR THR SER ILE ASP ALA PRO VAL THR ALA SER ILE ASP SEQRES 4 A 397 LEU GLN SER VAL SER TYR THR ASP LEU ALA THR GLN LEU SEQRES 5 A 397 ASN ASP VAL SER ASP PHE GLY LYS MET ILE ILE LEU LYS SEQRES 6 A 397 ASP ASN GLY PHE ASN ARG GLN VAL HIS VAL SER MET ASP SEQRES 7 A 397 LYS ARG THR LYS ILE GLN LEU ASP ASN GLU ASN VAL ARG SEQRES 8 A 397 LEU PHE ASN GLY ARG ASP LYS ASP SER THR SER PHE ILE SEQRES 9 A 397 LEU GLY ASP GLU PHE ALA VAL LEU ARG PHE TYR ARG ASN SEQRES 10 A 397 GLY GLU SER ILE SER TYR ILE ALA TYR LYS GLU ALA GLN SEQRES 11 A 397 MET MET ASN GLU ILE ALA GLU PHE TYR ALA ALA PRO PHE SEQRES 12 A 397 LYS LYS THR ARG ALA ILE ASN GLU LYS GLU ALA PHE GLU SEQRES 13 A 397 CYS ILE TYR ASP SER ARG THR ARG SER ALA GLY LYS ASP SEQRES 14 A 397 ILE VAL SER VAL LYS ILE ASN ILE ASP LYS ALA LYS LYS SEQRES 15 A 397 ILE LEU ASN LEU PRO GLU CYS ASP TYR ILE ASN ASP TYR SEQRES 16 A 397 ILE LYS THR PRO GLN VAL PRO HIS GLY ILE THR GLU SER SEQRES 17 A 397 GLN THR ARG ALA VAL PRO SER GLU PRO LYS THR VAL TYR SEQRES 18 A 397 VAL ILE CYS LEU ARG GLU ASN GLY SER THR ILE TYR PRO SEQRES 19 A 397 ASN GLU VAL SER ALA GLN MET GLN ASP ALA ALA ASN SER SEQRES 20 A 397 VAL TYR ALA VAL HIS GLY LEU LYS ARG TYR VAL ASN PHE SEQRES 21 A 397 HIS PHE VAL LEU TYR THR THR GLU TYR SER CYS PRO SER SEQRES 22 A 397 GLY ASP ALA LYS GLU GLY LEU GLU GLY PHE THR ALA SER SEQRES 23 A 397 LEU LYS SER ASN PRO LYS ALA GLU GLY TYR ASP ASP GLN SEQRES 24 A 397 ILE TYR PHE LEU ILE ARG TRP GLY THR TRP ASP ASN LYS SEQRES 25 A 397 ILE LEU GLY MET SER TRP PHE ASN SER TYR ASN VAL ASN SEQRES 26 A 397 THR ALA SER ASP PHE GLU ALA SER GLY MET SER THR THR SEQRES 27 A 397 GLN LEU MET TYR PRO GLY VAL MET ALA HIS GLU LEU GLY SEQRES 28 A 397 HIS ILE LEU GLY ALA GLU HIS THR ASP ASN SER LYS ASP SEQRES 29 A 397 LEU MET TYR ALA THR PHE THR GLY TYR LEU SER HIS LEU SEQRES 30 A 397 SER GLU LYS ASN MET ASP ILE ILE ALA LYS ASN LEU GLY SEQRES 31 A 397 TRP GLU ALA ALA ASP GLY ASP HET ZN C 401 1 HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *552(H2 O) HELIX 1 AA1 SER C 44 ASP C 54 1 11 HELIX 2 AA2 ARG C 96 ASP C 99 5 4 HELIX 3 AA3 GLU C 128 ALA C 141 1 14 HELIX 4 AA4 PRO C 142 LYS C 144 5 3 HELIX 5 AA5 ASN C 150 ALA C 154 1 5 HELIX 6 AA6 ILE C 177 ASN C 185 1 9 HELIX 7 AA7 TYR C 233 ALA C 250 1 18 HELIX 8 AA8 GLY C 253 ARG C 256 5 4 HELIX 9 AA9 ASP C 275 ASN C 290 1 16 HELIX 10 AB1 PRO C 291 GLU C 294 5 4 HELIX 11 AB2 TRP C 309 ILE C 313 5 5 HELIX 12 AB3 GLY C 344 LEU C 354 1 11 HELIX 13 AB4 SER C 378 LEU C 389 1 12 HELIX 14 AB5 GLU C 392 GLY C 396 5 5 HELIX 15 AB6 SER A 44 ASP A 54 1 11 HELIX 16 AB7 ARG A 96 ASP A 99 5 4 HELIX 17 AB8 GLU A 128 THR A 146 1 19 HELIX 18 AB9 ASN A 150 ALA A 154 1 5 HELIX 19 AC1 ILE A 177 ASN A 185 1 9 HELIX 20 AC2 TYR A 233 ALA A 250 1 18 HELIX 21 AC3 GLY A 253 ARG A 256 5 4 HELIX 22 AC4 ASP A 275 ASN A 290 1 16 HELIX 23 AC5 TRP A 309 ILE A 313 5 5 HELIX 24 AC6 GLY A 344 LEU A 354 1 11 HELIX 25 AC7 SER A 378 LEU A 389 1 12 HELIX 26 AC8 GLU A 392 GLY A 396 5 5 SHEET 1 AA1 9 SER C 37 ASP C 39 0 SHEET 2 AA1 9 LYS C 60 ASP C 66 1 O LYS C 65 N ILE C 38 SHEET 3 AA1 9 PHE C 69 MET C 77 -1 O ARG C 71 N LEU C 64 SHEET 4 AA1 9 GLU C 88 ASN C 94 -1 O ASN C 94 N SER C 76 SHEET 5 AA1 9 THR C 101 GLY C 106 -1 O LEU C 105 N ARG C 91 SHEET 6 AA1 9 PHE C 109 ARG C 116 -1 O PHE C 109 N GLY C 106 SHEET 7 AA1 9 GLU C 119 TYR C 126 -1 O TYR C 123 N LEU C 112 SHEET 8 AA1 9 ILE C 170 ASN C 176 -1 O VAL C 173 N ILE C 124 SHEET 9 AA1 9 PHE C 155 TYR C 159 -1 N ILE C 158 O SER C 172 SHEET 1 AA211 SER C 37 ASP C 39 0 SHEET 2 AA211 LYS C 60 ASP C 66 1 O LYS C 65 N ILE C 38 SHEET 3 AA211 PHE C 69 MET C 77 -1 O ARG C 71 N LEU C 64 SHEET 4 AA211 GLU C 88 ASN C 94 -1 O ASN C 94 N SER C 76 SHEET 5 AA211 LYS C 82 LEU C 85 -1 N ILE C 83 O VAL C 90 SHEET 6 AA211 VAL C 258 THR C 266 1 O PHE C 262 N LYS C 82 SHEET 7 AA211 LYS C 218 ARG C 226 1 N CYS C 224 O VAL C 263 SHEET 8 AA211 ILE C 300 ARG C 305 1 O ILE C 300 N ILE C 223 SHEET 9 AA211 SER C 333 THR C 337 1 O SER C 336 N LEU C 303 SHEET 10 AA211 GLY C 315 PHE C 319 -1 N MET C 316 O MET C 335 SHEET 11 AA211 TYR C 195 LYS C 197 1 N ILE C 196 O PHE C 319 SHEET 1 AA3 9 ALA A 36 ASP A 39 0 SHEET 2 AA3 9 LYS A 60 ASP A 66 1 O ILE A 63 N ILE A 38 SHEET 3 AA3 9 PHE A 69 MET A 77 -1 O VAL A 75 N LYS A 60 SHEET 4 AA3 9 GLU A 88 ASN A 94 -1 O ASN A 94 N SER A 76 SHEET 5 AA3 9 THR A 101 GLY A 106 -1 O LEU A 105 N ARG A 91 SHEET 6 AA3 9 PHE A 109 ARG A 116 -1 O PHE A 109 N GLY A 106 SHEET 7 AA3 9 GLU A 119 TYR A 126 -1 O TYR A 123 N LEU A 112 SHEET 8 AA3 9 ILE A 170 ASN A 176 -1 O ILE A 175 N SER A 122 SHEET 9 AA3 9 PHE A 155 TYR A 159 -1 N ILE A 158 O SER A 172 SHEET 1 AA411 ALA A 36 ASP A 39 0 SHEET 2 AA411 LYS A 60 ASP A 66 1 O ILE A 63 N ILE A 38 SHEET 3 AA411 PHE A 69 MET A 77 -1 O VAL A 75 N LYS A 60 SHEET 4 AA411 GLU A 88 ASN A 94 -1 O ASN A 94 N SER A 76 SHEET 5 AA411 LYS A 82 LEU A 85 -1 N ILE A 83 O VAL A 90 SHEET 6 AA411 VAL A 258 THR A 266 1 O PHE A 262 N LYS A 82 SHEET 7 AA411 LYS A 218 ARG A 226 1 N ARG A 226 O TYR A 265 SHEET 8 AA411 ILE A 300 ARG A 305 1 O ILE A 300 N ILE A 223 SHEET 9 AA411 SER A 333 THR A 337 1 O SER A 336 N LEU A 303 SHEET 10 AA411 GLY A 315 TRP A 318 -1 N MET A 316 O MET A 335 SHEET 11 AA411 TYR A 195 ILE A 196 1 N ILE A 196 O SER A 317 LINK OD1 ASP C 194 ZN ZN C 401 1555 1555 2.09 LINK OD2 ASP C 194 ZN ZN C 401 1555 1555 2.47 LINK NE2 HIS C 348 ZN ZN C 401 1555 1555 2.10 LINK NE2 HIS C 352 ZN ZN C 401 1555 1555 2.04 LINK NE2 HIS C 358 ZN ZN C 401 1555 1555 2.04 LINK OD1 ASP A 194 ZN ZN A 401 1555 1555 2.05 LINK OD2 ASP A 194 ZN ZN A 401 1555 1555 2.60 LINK NE2 HIS A 348 ZN ZN A 401 1555 1555 2.11 LINK NE2 HIS A 352 ZN ZN A 401 1555 1555 2.07 LINK NE2 HIS A 358 ZN ZN A 401 1555 1555 2.08 CISPEP 1 THR C 198 PRO C 199 0 1.00 CISPEP 2 ALA A 166 GLY A 167 0 1.77 CISPEP 3 ILE A 192 ASN A 193 0 -11.47 CRYST1 82.672 82.672 280.068 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012096 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012096 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003571 0.00000