HEADER GENE REGULATION 23-SEP-23 8WHB TITLE STRUCTURE OF NUCLEOSOME CORE PARTICLE OF ARABIDOPSIS THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: A, E; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HISTONE H4; COMPND 7 CHAIN: B, F; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HISTONE H2A.6; COMPND 11 CHAIN: C, G; COMPND 12 SYNONYM: HTA1,PROTEIN RESISTANT TO AGROBACTERIUM TRANSFORMATION 5; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 4; COMPND 15 MOLECULE: HISTONE H2B.6; COMPND 16 CHAIN: D, H; COMPND 17 SYNONYM: H2BAT,HTB9; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: DNA (SENSE STRAND); COMPND 21 CHAIN: I; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 6; COMPND 24 MOLECULE: DNA (ANTISENSE STRAND); COMPND 25 CHAIN: J; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: HTR2, AT1G09200, T12M4.9, HTR3, AT3G27360, K1G2.8, HTR13, SOURCE 6 AT5G10390, F12B17_260, HTR9, AT5G10400, F12B17_250, HTR1, AT5G65360, SOURCE 7 MNA5.9; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 12 ORGANISM_COMMON: THALE CRESS; SOURCE 13 ORGANISM_TAXID: 3702; SOURCE 14 GENE: AT1G07660, F24B9.25, AT1G07820, F24B9.8, AT2G28740, F8N16.2, SOURCE 15 T11P11.4, AT3G45930, F16L2_140, AT3G46320, F18L15.40, AT3G53730, SOURCE 16 F5K20_30, AT5G59690, MTH12.10, AT5G59970, MMN10.22; SOURCE 17 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 21 ORGANISM_COMMON: THALE CRESS; SOURCE 22 ORGANISM_TAXID: 3702; SOURCE 23 GENE: RAT5, H2A-1, AT5G54640, MRB17.14; SOURCE 24 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 26 MOL_ID: 4; SOURCE 27 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 28 ORGANISM_COMMON: THALE CRESS; SOURCE 29 ORGANISM_TAXID: 3702; SOURCE 30 GENE: H2B, AT3G45980, F16L2.190; SOURCE 31 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 32 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 33 MOL_ID: 5; SOURCE 34 SYNTHETIC: YES; SOURCE 35 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 36 ORGANISM_TAXID: 3702; SOURCE 37 MOL_ID: 6; SOURCE 38 SYNTHETIC: YES; SOURCE 39 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 40 ORGANISM_TAXID: 32630 KEYWDS NUCLEOSOME, CHROMATIN, HISTONE, PROTEIN DNA INTERACTION, KEYWDS 2 NUCLEOPROTEIN, GENE REGULATION EXPDTA ELECTRON MICROSCOPY AUTHOR Y.LIU,Z.ZHANG,J.DU REVDAT 1 17-APR-24 8WHB 0 JRNL AUTH Y.LIU,Z.ZHANG,H.HU,W.CHEN,F.ZHANG,Q.WANG,C.WANG,K.YAN,J.DU JRNL TITL MOLECULAR BASIS OF CHROMATIN REMODELLING BY DDM1 INVOLVED IN JRNL TITL 2 PLANT DNA METHYLATION. JRNL REF NAT.PLANTS V. 10 374 2024 JRNL REFN ESSN 2055-0278 JRNL PMID 38413824 JRNL DOI 10.1038/S41477-024-01640-Z REMARK 2 REMARK 2 RESOLUTION. 3.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.170 REMARK 3 NUMBER OF PARTICLES : 261707 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8WHB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 27-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300041041. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : STRUCTURE OF THE NUCLEOSOME REMARK 245 CORE PARTICLE OF ARABIDOPSIS REMARK 245 THALIANA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 6776 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 PRO A 38 REMARK 465 HIS A 39 REMARK 465 ARG A 40 REMARK 465 PHE A 41 REMARK 465 ARG A 42 REMARK 465 ARG A 134 REMARK 465 ALA A 135 REMARK 465 MET B 0 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 LEU B 22 REMARK 465 GLY B 102 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 THR C 6 REMARK 465 LEU C 7 REMARK 465 GLY C 8 REMARK 465 SER C 9 REMARK 465 GLY C 10 REMARK 465 GLY C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 LYS C 14 REMARK 465 LYS C 119 REMARK 465 LYS C 120 REMARK 465 ALA C 121 REMARK 465 GLY C 122 REMARK 465 ALA C 123 REMARK 465 SER C 124 REMARK 465 LYS C 125 REMARK 465 PRO C 126 REMARK 465 GLN C 127 REMARK 465 GLU C 128 REMARK 465 ASP C 129 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 PRO D 2 REMARK 465 ARG D 3 REMARK 465 ALA D 4 REMARK 465 GLU D 5 REMARK 465 LYS D 6 REMARK 465 LYS D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 GLU D 10 REMARK 465 LYS D 11 REMARK 465 LYS D 12 REMARK 465 PRO D 13 REMARK 465 ALA D 14 REMARK 465 ALA D 15 REMARK 465 GLU D 16 REMARK 465 LYS D 17 REMARK 465 PRO D 18 REMARK 465 VAL D 19 REMARK 465 GLU D 20 REMARK 465 GLU D 21 REMARK 465 LYS D 22 REMARK 465 SER D 23 REMARK 465 LYS D 24 REMARK 465 ALA D 25 REMARK 465 GLU D 26 REMARK 465 LYS D 27 REMARK 465 ALA D 28 REMARK 465 PRO D 29 REMARK 465 ALA D 30 REMARK 465 GLU D 31 REMARK 465 LYS D 32 REMARK 465 LYS D 33 REMARK 465 PRO D 34 REMARK 465 LYS D 35 REMARK 465 ALA D 36 REMARK 465 GLY D 37 REMARK 465 LYS D 38 REMARK 465 LYS D 39 REMARK 465 LEU D 40 REMARK 465 PRO D 41 REMARK 465 LYS D 42 REMARK 465 GLU D 43 REMARK 465 ALA D 44 REMARK 465 GLY D 45 REMARK 465 ALA D 46 REMARK 465 GLY D 47 REMARK 465 GLY D 48 REMARK 465 ASP D 49 REMARK 465 LYS D 50 REMARK 465 LYS D 51 REMARK 465 LYS D 52 REMARK 465 LYS D 53 REMARK 465 MET D 54 REMARK 465 LYS D 55 REMARK 465 LYS D 56 REMARK 465 LYS D 57 REMARK 465 SER D 58 REMARK 465 VAL D 59 REMARK 465 GLU D 60 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 ARG F 23 REMARK 465 GLY F 101 REMARK 465 GLY F 102 REMARK 465 MET G 0 REMARK 465 ALA G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 THR G 6 REMARK 465 LEU G 7 REMARK 465 GLY G 8 REMARK 465 SER G 9 REMARK 465 GLY G 10 REMARK 465 GLY G 11 REMARK 465 ALA G 12 REMARK 465 LYS G 13 REMARK 465 LYS G 14 REMARK 465 ALA G 15 REMARK 465 THR G 16 REMARK 465 SER G 17 REMARK 465 ASN G 111 REMARK 465 ILE G 112 REMARK 465 HIS G 113 REMARK 465 ASN G 114 REMARK 465 LEU G 115 REMARK 465 LEU G 116 REMARK 465 LEU G 117 REMARK 465 PRO G 118 REMARK 465 LYS G 119 REMARK 465 LYS G 120 REMARK 465 ALA G 121 REMARK 465 GLY G 122 REMARK 465 ALA G 123 REMARK 465 SER G 124 REMARK 465 LYS G 125 REMARK 465 PRO G 126 REMARK 465 GLN G 127 REMARK 465 GLU G 128 REMARK 465 ASP G 129 REMARK 465 MET H 0 REMARK 465 ALA H 1 REMARK 465 PRO H 2 REMARK 465 ARG H 3 REMARK 465 ALA H 4 REMARK 465 GLU H 5 REMARK 465 LYS H 6 REMARK 465 LYS H 7 REMARK 465 PRO H 8 REMARK 465 ALA H 9 REMARK 465 GLU H 10 REMARK 465 LYS H 11 REMARK 465 LYS H 12 REMARK 465 PRO H 13 REMARK 465 ALA H 14 REMARK 465 ALA H 15 REMARK 465 GLU H 16 REMARK 465 LYS H 17 REMARK 465 PRO H 18 REMARK 465 VAL H 19 REMARK 465 GLU H 20 REMARK 465 GLU H 21 REMARK 465 LYS H 22 REMARK 465 SER H 23 REMARK 465 LYS H 24 REMARK 465 ALA H 25 REMARK 465 GLU H 26 REMARK 465 LYS H 27 REMARK 465 ALA H 28 REMARK 465 PRO H 29 REMARK 465 ALA H 30 REMARK 465 GLU H 31 REMARK 465 LYS H 32 REMARK 465 LYS H 33 REMARK 465 PRO H 34 REMARK 465 LYS H 35 REMARK 465 ALA H 36 REMARK 465 GLY H 37 REMARK 465 LYS H 38 REMARK 465 LYS H 39 REMARK 465 LEU H 40 REMARK 465 PRO H 41 REMARK 465 LYS H 42 REMARK 465 GLU H 43 REMARK 465 ALA H 44 REMARK 465 GLY H 45 REMARK 465 ALA H 46 REMARK 465 GLY H 47 REMARK 465 GLY H 48 REMARK 465 ASP H 49 REMARK 465 LYS H 50 REMARK 465 LYS H 51 REMARK 465 LYS H 52 REMARK 465 LYS H 53 REMARK 465 MET H 54 REMARK 465 LYS H 55 REMARK 465 LYS H 56 REMARK 465 LYS H 57 REMARK 465 DA I 1 REMARK 465 DT I 2 REMARK 465 DC I 3 REMARK 465 DG I 4 REMARK 465 DA I 5 REMARK 465 DG I 6 REMARK 465 DA I 7 REMARK 465 DA I 8 REMARK 465 DT I 9 REMARK 465 DC I 10 REMARK 465 DC I 11 REMARK 465 DC I 12 REMARK 465 DG I 13 REMARK 465 DC J 135 REMARK 465 DG J 136 REMARK 465 DG J 137 REMARK 465 DG J 138 REMARK 465 DA J 139 REMARK 465 DT J 140 REMARK 465 DT J 141 REMARK 465 DC J 142 REMARK 465 DT J 143 REMARK 465 DC J 144 REMARK 465 DG J 145 REMARK 465 DA J 146 REMARK 465 DT J 147 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 52 -70.39 -71.40 REMARK 500 ASP A 81 62.19 61.18 REMARK 500 THR B 82 -165.62 -103.55 REMARK 500 ARG B 95 75.89 -109.33 REMARK 500 LEU C 98 51.74 -93.67 REMARK 500 ARG E 134 -16.57 -140.25 REMARK 500 SER G 19 45.70 -83.55 REMARK 500 LEU G 98 56.27 -96.33 REMARK 500 ASN G 105 56.06 33.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-37538 RELATED DB: EMDB REMARK 900 STRUCTURE OF NUCLEOSOME CORE PARTICLE OF ARABIDOPSIS THALIANA DBREF 8WHB A 0 135 UNP P59226 H31_ARATH 1 136 DBREF 8WHB B 0 102 UNP P59259 H4_ARATH 1 103 DBREF 8WHB C 0 129 UNP Q9LD28 H2A6_ARATH 1 130 DBREF 8WHB D 0 149 UNP O23629 H2B6_ARATH 1 150 DBREF 8WHB E 0 135 UNP P59226 H31_ARATH 1 136 DBREF 8WHB F 0 102 UNP P59259 H4_ARATH 1 103 DBREF 8WHB G 0 129 UNP Q9LD28 H2A6_ARATH 1 130 DBREF 8WHB H 0 149 UNP O23629 H2B6_ARATH 1 150 DBREF 8WHB I 1 147 PDB 8WHB 8WHB 1 147 DBREF 8WHB J 1 147 PDB 8WHB 8WHB 1 147 SEQRES 1 A 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 A 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 A 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 A 136 HIS ARG PHE ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 A 136 ARG LYS TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 A 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 A 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL ALA SEQRES 8 A 136 ALA LEU GLN GLU ALA ALA GLU ALA TYR LEU VAL GLY LEU SEQRES 9 A 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 A 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 A 136 ILE ARG GLY GLU ARG ALA SEQRES 1 B 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 B 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 B 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 B 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 B 103 GLU GLU THR ARG GLY VAL LEU LYS ILE PHE LEU GLU ASN SEQRES 6 B 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA ARG SEQRES 7 B 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 B 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 130 MET ALA GLY ARG GLY LYS THR LEU GLY SER GLY GLY ALA SEQRES 2 C 130 LYS LYS ALA THR SER ARG SER SER LYS ALA GLY LEU GLN SEQRES 3 C 130 PHE PRO VAL GLY ARG ILE ALA ARG PHE LEU LYS ALA GLY SEQRES 4 C 130 LYS TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR SEQRES 5 C 130 LEU ALA ALA VAL LEU GLU TYR LEU ALA ALA GLU VAL LEU SEQRES 6 C 130 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 7 C 130 ARG ILE VAL PRO ARG HIS ILE GLN LEU ALA VAL ARG ASN SEQRES 8 C 130 ASP GLU GLU LEU SER LYS LEU LEU GLY ASP VAL THR ILE SEQRES 9 C 130 ALA ASN GLY GLY VAL MET PRO ASN ILE HIS ASN LEU LEU SEQRES 10 C 130 LEU PRO LYS LYS ALA GLY ALA SER LYS PRO GLN GLU ASP SEQRES 1 D 150 MET ALA PRO ARG ALA GLU LYS LYS PRO ALA GLU LYS LYS SEQRES 2 D 150 PRO ALA ALA GLU LYS PRO VAL GLU GLU LYS SER LYS ALA SEQRES 3 D 150 GLU LYS ALA PRO ALA GLU LYS LYS PRO LYS ALA GLY LYS SEQRES 4 D 150 LYS LEU PRO LYS GLU ALA GLY ALA GLY GLY ASP LYS LYS SEQRES 5 D 150 LYS LYS MET LYS LYS LYS SER VAL GLU THR TYR LYS ILE SEQRES 6 D 150 TYR ILE PHE LYS VAL LEU LYS GLN VAL HIS PRO ASP ILE SEQRES 7 D 150 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 8 D 150 ILE ASN ASP ILE PHE GLU LYS LEU ALA SER GLU SER SER SEQRES 9 D 150 LYS LEU ALA ARG TYR ASN LYS LYS PRO THR ILE THR SER SEQRES 10 D 150 ARG GLU ILE GLN THR ALA VAL ARG LEU VAL LEU PRO GLY SEQRES 11 D 150 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 12 D 150 VAL THR LYS PHE THR SER SER SEQRES 1 E 136 MET ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY SEQRES 2 E 136 GLY LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA SEQRES 3 E 136 ARG LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO SEQRES 4 E 136 HIS ARG PHE ARG PRO GLY THR VAL ALA LEU ARG GLU ILE SEQRES 5 E 136 ARG LYS TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS SEQRES 6 E 136 LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP SEQRES 7 E 136 PHE LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL ALA SEQRES 8 E 136 ALA LEU GLN GLU ALA ALA GLU ALA TYR LEU VAL GLY LEU SEQRES 9 E 136 PHE GLU ASP THR ASN LEU CYS ALA ILE HIS ALA LYS ARG SEQRES 10 E 136 VAL THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG SEQRES 11 E 136 ILE ARG GLY GLU ARG ALA SEQRES 1 F 103 MET SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS SEQRES 2 F 103 GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN SEQRES 3 F 103 ILE GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA SEQRES 4 F 103 ARG ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR SEQRES 5 F 103 GLU GLU THR ARG GLY VAL LEU LYS ILE PHE LEU GLU ASN SEQRES 6 F 103 VAL ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA ARG SEQRES 7 F 103 ARG LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU SEQRES 8 F 103 LYS ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 130 MET ALA GLY ARG GLY LYS THR LEU GLY SER GLY GLY ALA SEQRES 2 G 130 LYS LYS ALA THR SER ARG SER SER LYS ALA GLY LEU GLN SEQRES 3 G 130 PHE PRO VAL GLY ARG ILE ALA ARG PHE LEU LYS ALA GLY SEQRES 4 G 130 LYS TYR ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR SEQRES 5 G 130 LEU ALA ALA VAL LEU GLU TYR LEU ALA ALA GLU VAL LEU SEQRES 6 G 130 GLU LEU ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR SEQRES 7 G 130 ARG ILE VAL PRO ARG HIS ILE GLN LEU ALA VAL ARG ASN SEQRES 8 G 130 ASP GLU GLU LEU SER LYS LEU LEU GLY ASP VAL THR ILE SEQRES 9 G 130 ALA ASN GLY GLY VAL MET PRO ASN ILE HIS ASN LEU LEU SEQRES 10 G 130 LEU PRO LYS LYS ALA GLY ALA SER LYS PRO GLN GLU ASP SEQRES 1 H 150 MET ALA PRO ARG ALA GLU LYS LYS PRO ALA GLU LYS LYS SEQRES 2 H 150 PRO ALA ALA GLU LYS PRO VAL GLU GLU LYS SER LYS ALA SEQRES 3 H 150 GLU LYS ALA PRO ALA GLU LYS LYS PRO LYS ALA GLY LYS SEQRES 4 H 150 LYS LEU PRO LYS GLU ALA GLY ALA GLY GLY ASP LYS LYS SEQRES 5 H 150 LYS LYS MET LYS LYS LYS SER VAL GLU THR TYR LYS ILE SEQRES 6 H 150 TYR ILE PHE LYS VAL LEU LYS GLN VAL HIS PRO ASP ILE SEQRES 7 H 150 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 8 H 150 ILE ASN ASP ILE PHE GLU LYS LEU ALA SER GLU SER SER SEQRES 9 H 150 LYS LEU ALA ARG TYR ASN LYS LYS PRO THR ILE THR SER SEQRES 10 H 150 ARG GLU ILE GLN THR ALA VAL ARG LEU VAL LEU PRO GLY SEQRES 11 H 150 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 12 H 150 VAL THR LYS PHE THR SER SER SEQRES 1 I 147 DA DT DC DG DA DG DA DA DT DC DC DC DG SEQRES 2 I 147 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 I 147 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 I 147 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 I 147 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 I 147 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 I 147 DC DC DC DC DG DC DG DT DT DT DA DA DC SEQRES 8 I 147 DC DG DC DC DC DA DA DG DG DG DG DA DT SEQRES 9 I 147 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 I 147 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 I 147 DA DG DA DT DA DT DA DT DA DC DA DT DC SEQRES 12 I 147 DC DG DA DT SEQRES 1 J 147 DA DT DC DG DG DA DT DG DT DA DT DA DT SEQRES 2 J 147 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 3 J 147 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 4 J 147 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 5 J 147 DG DG DC DG DG DT DT DA DA DA DC DG DC SEQRES 6 J 147 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 7 J 147 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 8 J 147 DG DC DG DG DT DG DC DT DA DG DA DG DC SEQRES 9 J 147 DT DG DT DC DT DA DC DG DA DC DC DA DA SEQRES 10 J 147 DT DT DG DA DG DC DG DG DC DC DT DC DG SEQRES 11 J 147 DG DC DA DC DC DG DG DG DA DT DT DC DT SEQRES 12 J 147 DC DG DA DT HELIX 1 AA1 GLY A 44 SER A 57 1 14 HELIX 2 AA2 ARG A 63 ILE A 74 1 12 HELIX 3 AA3 GLN A 85 ALA A 114 1 30 HELIX 4 AA4 MET A 120 GLY A 132 1 13 HELIX 5 AA5 ASP B 24 ILE B 29 5 6 HELIX 6 AA6 THR B 30 GLY B 42 1 13 HELIX 7 AA7 LEU B 49 ALA B 76 1 28 HELIX 8 AA8 THR B 82 GLN B 93 1 12 HELIX 9 AA9 SER C 17 GLY C 23 1 7 HELIX 10 AB1 PRO C 27 ALA C 37 1 11 HELIX 11 AB2 GLY C 47 ASN C 74 1 28 HELIX 12 AB3 VAL C 80 ASP C 91 1 12 HELIX 13 AB4 ASP C 91 LEU C 98 1 8 HELIX 14 AB5 HIS C 113 LEU C 117 5 5 HELIX 15 AB6 TYR D 62 HIS D 74 1 13 HELIX 16 AB7 SER D 80 ASN D 109 1 30 HELIX 17 AB8 THR D 115 LEU D 127 1 13 HELIX 18 AB9 PRO D 128 SER D 149 1 22 HELIX 19 AC1 THR E 45 GLN E 55 1 11 HELIX 20 AC2 ARG E 63 GLN E 76 1 14 HELIX 21 AC3 GLN E 85 ALA E 114 1 30 HELIX 22 AC4 MET E 120 ILE E 130 1 11 HELIX 23 AC5 ASP F 24 ILE F 29 5 6 HELIX 24 AC6 THR F 30 GLY F 42 1 13 HELIX 25 AC7 LEU F 49 ALA F 76 1 28 HELIX 26 AC8 THR F 82 ARG F 92 1 11 HELIX 27 AC9 PRO G 27 GLY G 38 1 12 HELIX 28 AD1 ALA G 46 ASN G 74 1 29 HELIX 29 AD2 VAL G 80 ASP G 91 1 12 HELIX 30 AD3 ASP G 91 LEU G 98 1 8 HELIX 31 AD4 TYR H 62 HIS H 74 1 13 HELIX 32 AD5 SER H 80 ASN H 109 1 30 HELIX 33 AD6 SER H 116 LEU H 127 1 12 HELIX 34 AD7 PRO H 128 SER H 148 1 21 SHEET 1 AA1 2 ARG A 83 PHE A 84 0 SHEET 2 AA1 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG A 83 SHEET 1 AA2 2 THR A 118 ILE A 119 0 SHEET 2 AA2 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE A 119 SHEET 1 AA3 2 ARG B 45 ILE B 46 0 SHEET 2 AA3 2 THR E 118 ILE E 119 1 O ILE E 119 N ARG B 45 SHEET 1 AA4 2 THR B 80 VAL B 81 0 SHEET 2 AA4 2 ARG E 83 PHE E 84 1 O ARG E 83 N VAL B 81 SHEET 1 AA5 2 THR B 96 TYR B 98 0 SHEET 2 AA5 2 VAL C 101 ILE C 103 1 O THR C 102 N THR B 96 SHEET 1 AA6 2 ARG C 43 VAL C 44 0 SHEET 2 AA6 2 THR D 113 ILE D 114 1 O ILE D 114 N ARG C 43 SHEET 1 AA7 2 ARG C 78 ILE C 79 0 SHEET 2 AA7 2 GLY D 78 ILE D 79 1 O GLY D 78 N ILE C 79 SHEET 1 AA8 2 THR F 96 TYR F 98 0 SHEET 2 AA8 2 VAL G 101 ILE G 103 1 O THR G 102 N THR F 96 SHEET 1 AA9 2 ARG G 43 VAL G 44 0 SHEET 2 AA9 2 THR H 113 ILE H 114 1 O ILE H 114 N ARG G 43 SHEET 1 AB1 2 ARG G 78 ILE G 79 0 SHEET 2 AB1 2 GLY H 78 ILE H 79 1 O GLY H 78 N ILE G 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000