HEADER OXIDOREDUCTASE 29-SEP-23 8WL4 TITLE THE STRUCTURE OF D-MANDELATE DEHYDROGENASE WITH L103G AND T143G TITLE 2 MUTATIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDROPANTOATE 2-REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-MANDELATE DEHYDROGENASE, KETOPANTOATE REDUCTASE; COMPND 5 EC: 1.1.1.169; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEVILACTOBACILLUS BREVIS; SOURCE 3 ORGANISM_COMMON: LACTOBACILLUS BREVIS; SOURCE 4 ORGANISM_TAXID: 1580; SOURCE 5 GENE: CNR30_12720, UCCLB556_2064, LBMDH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS D-MANDELATE DEHYDROGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.LIU,Z.M.RAO REVDAT 1 02-OCT-24 8WL4 0 JRNL AUTH F.LIU,Z.M.RAO JRNL TITL THE STRUCTURE OF D-MANDELATE DEHYDROGENASE WITH L103G AND JRNL TITL 2 T143G MUTATIONS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 18936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.246 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1250 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4678 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -10.25000 REMARK 3 B22 (A**2) : -1.05000 REMARK 3 B33 (A**2) : 11.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.259 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.624 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.837 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4790 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4562 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6554 ; 1.132 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10464 ; 0.745 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 630 ; 5.539 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;42.622 ;26.602 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 754 ;14.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;11.167 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5602 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1036 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2500 ; 0.694 ; 2.427 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2499 ; 0.694 ; 2.427 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3126 ; 1.284 ; 3.642 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3127 ; 1.284 ; 3.642 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2288 ; 0.334 ; 2.415 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2289 ; 0.334 ; 2.415 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3425 ; 0.699 ; 3.624 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5385 ; 2.763 ;28.591 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5380 ; 2.753 ;28.583 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A B 9959 0.03 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 21 REMARK 3 ORIGIN FOR THE GROUP (A): 25.9425 29.3747 15.2804 REMARK 3 T TENSOR REMARK 3 T11: 0.2089 T22: 0.0870 REMARK 3 T33: 0.2019 T12: 0.0256 REMARK 3 T13: -0.0870 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 4.2825 L22: 4.6687 REMARK 3 L33: 0.8335 L12: -2.6398 REMARK 3 L13: -1.8552 L23: 1.4412 REMARK 3 S TENSOR REMARK 3 S11: -0.1862 S12: -0.2173 S13: 0.2682 REMARK 3 S21: -0.0181 S22: 0.3010 S23: -0.2148 REMARK 3 S31: 0.0643 S32: 0.1167 S33: -0.1148 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 61 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1734 26.4043 15.6871 REMARK 3 T TENSOR REMARK 3 T11: 0.2220 T22: 0.1378 REMARK 3 T33: 0.1737 T12: 0.0325 REMARK 3 T13: -0.0168 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.8551 L22: 3.6623 REMARK 3 L33: 0.4106 L12: -1.3247 REMARK 3 L13: 0.2773 L23: -0.0268 REMARK 3 S TENSOR REMARK 3 S11: -0.1149 S12: -0.0776 S13: 0.0859 REMARK 3 S21: 0.2712 S22: 0.0139 S23: -0.2598 REMARK 3 S31: 0.0388 S32: 0.0933 S33: 0.1011 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 62 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8631 15.4386 17.0381 REMARK 3 T TENSOR REMARK 3 T11: 0.4189 T22: 0.0846 REMARK 3 T33: 0.2636 T12: 0.1365 REMARK 3 T13: 0.0786 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 2.9178 L22: 1.9727 REMARK 3 L33: 0.2580 L12: 1.6674 REMARK 3 L13: -0.7071 L23: -0.1144 REMARK 3 S TENSOR REMARK 3 S11: -0.2630 S12: -0.0635 S13: -0.1996 REMARK 3 S21: 0.3709 S22: 0.1608 S23: 0.2111 REMARK 3 S31: 0.2180 S32: 0.0884 S33: 0.1021 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 117 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5178 16.4078 12.0491 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.3527 REMARK 3 T33: 0.1538 T12: 0.0279 REMARK 3 T13: 0.0224 T23: -0.1009 REMARK 3 L TENSOR REMARK 3 L11: 1.1084 L22: 5.7808 REMARK 3 L33: 0.0845 L12: -2.5271 REMARK 3 L13: -0.2526 L23: 0.5940 REMARK 3 S TENSOR REMARK 3 S11: -0.1073 S12: -0.0609 S13: -0.0063 REMARK 3 S21: 0.1943 S22: 0.0740 S23: 0.0499 REMARK 3 S31: 0.0172 S32: -0.0818 S33: 0.0333 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 118 A 178 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1779 28.3301 8.4590 REMARK 3 T TENSOR REMARK 3 T11: 0.2815 T22: 0.0112 REMARK 3 T33: 0.2512 T12: 0.0032 REMARK 3 T13: -0.0121 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.2557 L22: 0.9154 REMARK 3 L33: 2.0869 L12: -0.4212 REMARK 3 L13: 1.2807 L23: 0.3453 REMARK 3 S TENSOR REMARK 3 S11: -0.1778 S12: -0.0185 S13: 0.0961 REMARK 3 S21: -0.0292 S22: -0.0760 S23: 0.0957 REMARK 3 S31: -0.2477 S32: -0.1027 S33: 0.2539 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 179 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8946 13.6785 -10.8782 REMARK 3 T TENSOR REMARK 3 T11: 0.2626 T22: 0.0945 REMARK 3 T33: 0.1939 T12: 0.0200 REMARK 3 T13: 0.0292 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 0.6832 L22: 0.7566 REMARK 3 L33: 0.8525 L12: 0.3297 REMARK 3 L13: -0.4977 L23: -0.0737 REMARK 3 S TENSOR REMARK 3 S11: 0.0684 S12: 0.0169 S13: 0.1657 REMARK 3 S21: 0.0055 S22: 0.0720 S23: -0.1384 REMARK 3 S31: -0.1164 S32: -0.0398 S33: -0.1404 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 309 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0218 1.6559 -5.6035 REMARK 3 T TENSOR REMARK 3 T11: 0.2576 T22: 0.1455 REMARK 3 T33: 0.1977 T12: 0.0109 REMARK 3 T13: -0.0370 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 3.2679 L22: 1.8064 REMARK 3 L33: 0.1004 L12: -2.3728 REMARK 3 L13: -0.3863 L23: 0.2276 REMARK 3 S TENSOR REMARK 3 S11: 0.0910 S12: -0.0192 S13: 0.2179 REMARK 3 S21: -0.0179 S22: 0.0098 S23: -0.1070 REMARK 3 S31: 0.0176 S32: -0.0070 S33: -0.1007 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -2 B 61 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2481 -27.2249 13.7988 REMARK 3 T TENSOR REMARK 3 T11: 0.2804 T22: 0.0967 REMARK 3 T33: 0.2319 T12: -0.0673 REMARK 3 T13: -0.0021 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 3.0998 L22: 1.2139 REMARK 3 L33: 0.0803 L12: 1.6963 REMARK 3 L13: 0.3441 L23: 0.1114 REMARK 3 S TENSOR REMARK 3 S11: -0.1202 S12: -0.0032 S13: -0.2664 REMARK 3 S21: -0.1243 S22: 0.0954 S23: -0.1159 REMARK 3 S31: -0.0275 S32: -0.0052 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 62 B 93 REMARK 3 ORIGIN FOR THE GROUP (A): 22.8640 -15.1095 12.2656 REMARK 3 T TENSOR REMARK 3 T11: 0.3474 T22: 0.0732 REMARK 3 T33: 0.2477 T12: -0.0794 REMARK 3 T13: -0.1158 T23: -0.0522 REMARK 3 L TENSOR REMARK 3 L11: 2.0821 L22: 2.8988 REMARK 3 L33: 0.9349 L12: -1.5543 REMARK 3 L13: 0.5727 L23: 0.6996 REMARK 3 S TENSOR REMARK 3 S11: -0.1459 S12: 0.0773 S13: -0.0084 REMARK 3 S21: -0.1887 S22: 0.1805 S23: 0.1288 REMARK 3 S31: -0.1555 S32: 0.2048 S33: -0.0346 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 117 REMARK 3 ORIGIN FOR THE GROUP (A): 14.5142 -16.1068 17.2873 REMARK 3 T TENSOR REMARK 3 T11: 0.2729 T22: 0.3607 REMARK 3 T33: 0.1403 T12: -0.0057 REMARK 3 T13: -0.0803 T23: -0.1129 REMARK 3 L TENSOR REMARK 3 L11: 1.0811 L22: 4.6770 REMARK 3 L33: 0.3133 L12: 2.0950 REMARK 3 L13: -0.4228 L23: -0.5212 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: 0.2341 S13: -0.0743 REMARK 3 S21: -0.0867 S22: 0.0061 S23: -0.0189 REMARK 3 S31: 0.0199 S32: -0.3056 S33: 0.0776 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 118 B 178 REMARK 3 ORIGIN FOR THE GROUP (A): 18.1703 -28.0207 20.8658 REMARK 3 T TENSOR REMARK 3 T11: 0.2759 T22: 0.0267 REMARK 3 T33: 0.2674 T12: -0.0192 REMARK 3 T13: -0.0303 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 0.6844 L22: 0.6902 REMARK 3 L33: 2.1721 L12: 0.0211 REMARK 3 L13: -1.2161 L23: -0.0489 REMARK 3 S TENSOR REMARK 3 S11: -0.2359 S12: 0.0778 S13: -0.1598 REMARK 3 S21: 0.0627 S22: -0.0919 S23: 0.0878 REMARK 3 S31: 0.3833 S32: -0.1439 S33: 0.3278 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 179 B 275 REMARK 3 ORIGIN FOR THE GROUP (A): 21.8828 -13.3716 40.2016 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.0958 REMARK 3 T33: 0.2034 T12: 0.0042 REMARK 3 T13: -0.0256 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.5824 L22: 0.8283 REMARK 3 L33: 0.8088 L12: 0.1303 REMARK 3 L13: 0.5825 L23: -0.2022 REMARK 3 S TENSOR REMARK 3 S11: 0.0525 S12: -0.0041 S13: -0.1659 REMARK 3 S21: -0.0256 S22: 0.0590 S23: -0.1443 REMARK 3 S31: 0.1140 S32: -0.0629 S33: -0.1115 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 276 B 309 REMARK 3 ORIGIN FOR THE GROUP (A): 18.0094 -1.3203 34.9390 REMARK 3 T TENSOR REMARK 3 T11: 0.2755 T22: 0.1624 REMARK 3 T33: 0.1520 T12: 0.0023 REMARK 3 T13: 0.0033 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 3.0228 L22: 1.2095 REMARK 3 L33: 0.5162 L12: 0.3291 REMARK 3 L13: 1.2322 L23: 0.2423 REMARK 3 S TENSOR REMARK 3 S11: 0.1246 S12: 0.0816 S13: 0.0179 REMARK 3 S21: -0.1466 S22: -0.1135 S23: -0.0185 REMARK 3 S31: 0.0203 S32: 0.0091 S33: -0.0111 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8WL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 03-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041491. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL18U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 44.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M NACL, 0.05M TRIS PH 8.5, 25% REMARK 280 POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 41.31000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 41.31000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 65.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -58.64000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 414 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 413 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 49 -74.48 -42.66 REMARK 500 HIS A 96 64.07 64.63 REMARK 500 GLN A 149 112.63 -164.12 REMARK 500 VAL A 192 -60.57 -98.73 REMARK 500 VAL A 252 -92.00 -98.86 REMARK 500 LEU A 275 -107.34 -125.88 REMARK 500 HIS B 96 64.05 64.57 REMARK 500 GLN B 149 112.44 -164.18 REMARK 500 VAL B 192 -60.56 -98.46 REMARK 500 VAL B 252 -91.63 -98.47 REMARK 500 LEU B 275 -107.56 -125.77 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8WL4 A 1 309 UNP A0A7Z6MKR0_LEVBR DBREF2 8WL4 A A0A7Z6MKR0 1 309 DBREF1 8WL4 B 1 309 UNP A0A7Z6MKR0_LEVBR DBREF2 8WL4 B A0A7Z6MKR0 1 309 SEQADV 8WL4 SER A -2 UNP A0A7Z6MKR EXPRESSION TAG SEQADV 8WL4 GLU A -1 UNP A0A7Z6MKR EXPRESSION TAG SEQADV 8WL4 PHE A 0 UNP A0A7Z6MKR EXPRESSION TAG SEQADV 8WL4 GLY A 103 UNP A0A7Z6MKR ALA 103 ENGINEERED MUTATION SEQADV 8WL4 GLY A 143 UNP A0A7Z6MKR THR 143 ENGINEERED MUTATION SEQADV 8WL4 SER B -2 UNP A0A7Z6MKR EXPRESSION TAG SEQADV 8WL4 GLU B -1 UNP A0A7Z6MKR EXPRESSION TAG SEQADV 8WL4 PHE B 0 UNP A0A7Z6MKR EXPRESSION TAG SEQADV 8WL4 GLY B 103 UNP A0A7Z6MKR ALA 103 ENGINEERED MUTATION SEQADV 8WL4 GLY B 143 UNP A0A7Z6MKR THR 143 ENGINEERED MUTATION SEQRES 1 A 312 SER GLU PHE MET LYS ILE ALA ILE ALA GLY ALA GLY ALA SEQRES 2 A 312 MET GLY SER ARG PHE GLY VAL LYS LEU GLN GLU ALA GLY SEQRES 3 A 312 ASN GLN VAL THR LEU ILE ASP ASN TRP SER ALA HIS VAL SEQRES 4 A 312 ASP GLN ILE ASN GLN ALA GLY LEU THR VAL THR THR ASP SEQRES 5 A 312 ASP GLY VAL ASP HIS VAL TYR THR MET THR ALA GLN HIS SEQRES 6 A 312 PRO GLU ALA VAL THR ASP GLN PHE ASP LEU ILE ILE LEU SEQRES 7 A 312 PHE THR LYS THR MET GLN MET ASP ALA MET LEU GLN GLN SEQRES 8 A 312 LEU ALA PRO VAL LEU THR ASN HIS PRO ILE VAL LEU THR SEQRES 9 A 312 LEU GLY ASN GLY ILE GLY ASN ILE GLU THR ILE GLU ARG SEQRES 10 A 312 HIS VAL PRO LYS ASN GLN ILE VAL VAL GLY THR THR VAL SEQRES 11 A 312 TRP SER SER GLY LEU THR GLY PRO GLY HIS ILE THR VAL SEQRES 12 A 312 THR GLY GLY GLY SER ILE SER LEU GLN ALA VAL VAL PRO SEQRES 13 A 312 ASP GLN PHE PRO ASN LEU ALA ASP LEU ILE THR THR LEU SEQRES 14 A 312 ASN ALA ALA GLY LEU ASN ALA SER ALA ALA ASP ASN VAL SEQRES 15 A 312 LEU ALA ALA ILE TRP LYS LYS ALA GLY LEU ASN SER VAL SEQRES 16 A 312 LEU ASN THR TYR CYS THR LEU PHE ASP CYS ASN ILE GLY SEQRES 17 A 312 GLU PHE GLY ALA LEU LYS ASN TRP GLN THR LEU THR ALA SEQRES 18 A 312 THR VAL LEU ASP GLU PHE GLN ALA VAL ALA ASP ALA ALA SEQRES 19 A 312 GLN ILE GLN PHE SER ALA ALA ALA VAL THR ASP LEU ILE SEQRES 20 A 312 ALA ALA GLN PHE PRO ALA ALA VAL ASN GLY ASN HIS TYR SEQRES 21 A 312 PRO SER MET HIS GLN ASP MET ALA ASN GLN ARG PRO THR SEQRES 22 A 312 GLU ILE ASP PHE LEU ASN GLY TYR VAL ALA LYS LEU GLY SEQRES 23 A 312 GLN GLN LEU HIS VAL PRO THR PRO ALA ASN ALA LEU LEU SEQRES 24 A 312 THR GLN LEU ILE HIS SER GLN GLU GLN LEU LYS GLN ILE SEQRES 1 B 312 SER GLU PHE MET LYS ILE ALA ILE ALA GLY ALA GLY ALA SEQRES 2 B 312 MET GLY SER ARG PHE GLY VAL LYS LEU GLN GLU ALA GLY SEQRES 3 B 312 ASN GLN VAL THR LEU ILE ASP ASN TRP SER ALA HIS VAL SEQRES 4 B 312 ASP GLN ILE ASN GLN ALA GLY LEU THR VAL THR THR ASP SEQRES 5 B 312 ASP GLY VAL ASP HIS VAL TYR THR MET THR ALA GLN HIS SEQRES 6 B 312 PRO GLU ALA VAL THR ASP GLN PHE ASP LEU ILE ILE LEU SEQRES 7 B 312 PHE THR LYS THR MET GLN MET ASP ALA MET LEU GLN GLN SEQRES 8 B 312 LEU ALA PRO VAL LEU THR ASN HIS PRO ILE VAL LEU THR SEQRES 9 B 312 LEU GLY ASN GLY ILE GLY ASN ILE GLU THR ILE GLU ARG SEQRES 10 B 312 HIS VAL PRO LYS ASN GLN ILE VAL VAL GLY THR THR VAL SEQRES 11 B 312 TRP SER SER GLY LEU THR GLY PRO GLY HIS ILE THR VAL SEQRES 12 B 312 THR GLY GLY GLY SER ILE SER LEU GLN ALA VAL VAL PRO SEQRES 13 B 312 ASP GLN PHE PRO ASN LEU ALA ASP LEU ILE THR THR LEU SEQRES 14 B 312 ASN ALA ALA GLY LEU ASN ALA SER ALA ALA ASP ASN VAL SEQRES 15 B 312 LEU ALA ALA ILE TRP LYS LYS ALA GLY LEU ASN SER VAL SEQRES 16 B 312 LEU ASN THR TYR CYS THR LEU PHE ASP CYS ASN ILE GLY SEQRES 17 B 312 GLU PHE GLY ALA LEU LYS ASN TRP GLN THR LEU THR ALA SEQRES 18 B 312 THR VAL LEU ASP GLU PHE GLN ALA VAL ALA ASP ALA ALA SEQRES 19 B 312 GLN ILE GLN PHE SER ALA ALA ALA VAL THR ASP LEU ILE SEQRES 20 B 312 ALA ALA GLN PHE PRO ALA ALA VAL ASN GLY ASN HIS TYR SEQRES 21 B 312 PRO SER MET HIS GLN ASP MET ALA ASN GLN ARG PRO THR SEQRES 22 B 312 GLU ILE ASP PHE LEU ASN GLY TYR VAL ALA LYS LEU GLY SEQRES 23 B 312 GLN GLN LEU HIS VAL PRO THR PRO ALA ASN ALA LEU LEU SEQRES 24 B 312 THR GLN LEU ILE HIS SER GLN GLU GLN LEU LYS GLN ILE FORMUL 3 HOH *40(H2 O) HELIX 1 AA1 GLY A 9 ALA A 22 1 14 HELIX 2 AA2 TRP A 32 GLY A 43 1 12 HELIX 3 AA3 HIS A 62 VAL A 66 5 5 HELIX 4 AA4 LYS A 78 ALA A 90 1 13 HELIX 5 AA5 PRO A 91 HIS A 96 5 6 HELIX 6 AA6 GLY A 107 ARG A 114 1 8 HELIX 7 AA7 PRO A 117 ASN A 119 5 3 HELIX 8 AA8 ASN A 158 ALA A 169 1 12 HELIX 9 AA9 ASN A 178 ASP A 201 1 24 HELIX 10 AB1 ASN A 203 ALA A 209 1 7 HELIX 11 AB2 ASN A 212 ALA A 231 1 20 HELIX 12 AB3 SER A 236 PHE A 248 1 13 HELIX 13 AB4 PRO A 258 ASN A 266 1 9 HELIX 14 AB5 GLU A 271 PHE A 274 5 4 HELIX 15 AB6 LEU A 275 LEU A 286 1 12 HELIX 16 AB7 THR A 290 ILE A 309 1 20 HELIX 17 AB8 GLY B 9 ALA B 22 1 14 HELIX 18 AB9 TRP B 32 GLY B 43 1 12 HELIX 19 AC1 HIS B 62 VAL B 66 5 5 HELIX 20 AC2 LYS B 78 ALA B 90 1 13 HELIX 21 AC3 PRO B 91 HIS B 96 5 6 HELIX 22 AC4 GLY B 107 ARG B 114 1 8 HELIX 23 AC5 PRO B 117 ASN B 119 5 3 HELIX 24 AC6 ASN B 158 ALA B 169 1 12 HELIX 25 AC7 ASN B 178 ASP B 201 1 24 HELIX 26 AC8 ASN B 203 ALA B 209 1 7 HELIX 27 AC9 ASN B 212 ALA B 231 1 20 HELIX 28 AD1 SER B 236 PHE B 248 1 13 HELIX 29 AD2 PRO B 258 ASN B 266 1 9 HELIX 30 AD3 GLU B 271 PHE B 274 5 4 HELIX 31 AD4 LEU B 275 LEU B 286 1 12 HELIX 32 AD5 THR B 290 ILE B 309 1 20 SHEET 1 AA1 8 THR A 59 GLN A 61 0 SHEET 2 AA1 8 GLN A 25 ILE A 29 1 N LEU A 28 O THR A 59 SHEET 3 AA1 8 LYS A 2 ALA A 6 1 N ILE A 5 O ILE A 29 SHEET 4 AA1 8 LEU A 72 LEU A 75 1 O ILE A 74 N ALA A 4 SHEET 5 AA1 8 ILE A 98 THR A 101 1 O LEU A 100 N ILE A 73 SHEET 6 AA1 8 ILE A 121 THR A 126 1 O VAL A 122 N VAL A 99 SHEET 7 AA1 8 ILE A 146 ALA A 150 -1 O GLN A 149 N VAL A 123 SHEET 8 AA1 8 ALA A 173 ALA A 175 1 O SER A 174 N LEU A 148 SHEET 1 AA2 4 ASP A 53 TYR A 56 0 SHEET 2 AA2 4 LEU A 44 THR A 47 -1 N LEU A 44 O TYR A 56 SHEET 3 AA2 4 HIS A 137 THR A 139 1 O ILE A 138 N THR A 45 SHEET 4 AA2 4 GLY A 131 GLY A 134 -1 N GLY A 131 O THR A 139 SHEET 1 AA3 8 THR B 59 GLN B 61 0 SHEET 2 AA3 8 GLN B 25 ILE B 29 1 N LEU B 28 O THR B 59 SHEET 3 AA3 8 LYS B 2 ALA B 6 1 N ILE B 5 O ILE B 29 SHEET 4 AA3 8 LEU B 72 LEU B 75 1 O ILE B 74 N ALA B 4 SHEET 5 AA3 8 ILE B 98 THR B 101 1 O LEU B 100 N ILE B 73 SHEET 6 AA3 8 ILE B 121 THR B 126 1 O VAL B 122 N VAL B 99 SHEET 7 AA3 8 ILE B 146 ALA B 150 -1 O GLN B 149 N VAL B 123 SHEET 8 AA3 8 ALA B 173 ALA B 175 1 O SER B 174 N LEU B 148 SHEET 1 AA4 4 ASP B 53 TYR B 56 0 SHEET 2 AA4 4 LEU B 44 THR B 47 -1 N LEU B 44 O TYR B 56 SHEET 3 AA4 4 HIS B 137 THR B 139 1 O ILE B 138 N THR B 45 SHEET 4 AA4 4 GLY B 131 GLY B 134 -1 N GLY B 131 O THR B 139 CRYST1 82.620 131.990 58.640 90.00 90.00 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012104 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017053 0.00000