HEADER TRANSFERASE 03-OCT-23 8WMB TITLE CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER D46A DOPAMINE N- TITLE 2 ACETYLTRANSFERASE IN COMPLEX WITH ACETYL-COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYLALKYLAMINE N-ACETYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: SPECK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768 KEYWDS DOPAMINE N-ACETYLTRANSFERASE(DAT), GCN5-RELATED N- KEYWDS 2 ACETYLTRANSFERASE(GNAT), ARYLALKYLAMINE N-ACETYLTRANSFERASE(AANAT), KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.WU,I.C.HU,H.C.CHENG,P.C.LYU REVDAT 1 02-OCT-24 8WMB 0 JRNL AUTH C.Y.WU,I.C.HU,H.C.CHENG,P.C.LYU JRNL TITL CRYSTAL STRUCTURE OF DROSOPHILA MELANOGASTER D46A DOPAMINE JRNL TITL 2 N-ACETYLTRANSFERASE IN COMPLEX WITH ACETYL-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 24957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 1225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 22.7440 - 3.4179 0.99 2799 141 0.1656 0.1676 REMARK 3 2 3.4179 - 2.7143 1.00 2663 159 0.1830 0.1902 REMARK 3 3 2.7143 - 2.3716 1.00 2673 128 0.1882 0.2095 REMARK 3 4 2.3716 - 2.1550 0.99 2615 128 0.1999 0.2207 REMARK 3 5 2.1550 - 2.0006 1.00 2620 133 0.1829 0.2250 REMARK 3 6 2.0006 - 1.8827 1.00 2636 133 0.2051 0.2657 REMARK 3 7 1.8827 - 1.7885 1.00 2618 135 0.1996 0.2546 REMARK 3 8 1.7885 - 1.7106 1.00 2567 147 0.2110 0.2623 REMARK 3 9 1.7106 - 1.6450 0.97 2541 121 0.2542 0.3013 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041573. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 30.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 6.5 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M NAH2PO4, 1.6M K2HPO4, 0.1M REMARK 280 IMIDAZOLE, 0.2M NACL, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.97400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.87700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.58100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.87700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.97400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 26.58100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 19 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 43 -56.21 -130.05 REMARK 500 CYS A 73 29.55 -145.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 638 DISTANCE = 5.87 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V8I RELATED DB: PDB REMARK 900 RELATED ID: 3TE4 RELATED DB: PDB DBREF 8WMB A 21 230 UNP Q94521 DNAT_DROME 56 265 SEQADV 8WMB GLY A 17 UNP Q94521 EXPRESSION TAG SEQADV 8WMB SER A 18 UNP Q94521 EXPRESSION TAG SEQADV 8WMB HIS A 19 UNP Q94521 EXPRESSION TAG SEQADV 8WMB MET A 20 UNP Q94521 EXPRESSION TAG SEQADV 8WMB ALA A 46 UNP Q94521 ASP 81 ENGINEERED MUTATION SEQRES 1 A 214 GLY SER HIS MET PRO TYR THR ILE GLU LEU ILE GLN PRO SEQRES 2 A 214 GLU ASP GLY GLU ALA VAL ILE ALA MET LEU LYS THR PHE SEQRES 3 A 214 PHE PHE LYS ALA GLU PRO LEU ASN THR PHE LEU ASP LEU SEQRES 4 A 214 GLY GLU CYS LYS GLU LEU GLU LYS TYR SER LEU LYS PRO SEQRES 5 A 214 LEU PRO ASP ASN CYS SER TYR LYS ALA VAL ASN LYS LYS SEQRES 6 A 214 GLY GLU ILE ILE GLY VAL PHE LEU ASN GLY LEU MET ARG SEQRES 7 A 214 ARG PRO SER PRO ASP ASP VAL PRO GLU LYS ALA ALA ASP SEQRES 8 A 214 SER CYS GLU HIS PRO LYS PHE LYS LYS ILE LEU SER LEU SEQRES 9 A 214 MET ASP HIS VAL GLU GLU GLN PHE ASN ILE PHE ASP VAL SEQRES 10 A 214 TYR PRO ASP GLU GLU LEU ILE LEU ASP GLY LYS ILE LEU SEQRES 11 A 214 SER VAL ASP THR ASN TYR ARG GLY LEU GLY ILE ALA GLY SEQRES 12 A 214 ARG LEU THR GLU ARG ALA TYR GLU TYR MET ARG GLU ASN SEQRES 13 A 214 GLY ILE ASN VAL TYR HIS VAL LEU CYS SER SER HIS TYR SEQRES 14 A 214 SER ALA ARG VAL MET GLU LYS LEU GLY PHE HIS GLU VAL SEQRES 15 A 214 PHE ARG MET GLN PHE ALA ASP TYR LYS PRO GLN GLY GLU SEQRES 16 A 214 VAL VAL PHE LYS PRO ALA ALA PRO HIS VAL GLY ILE GLN SEQRES 17 A 214 VAL MET ALA LYS GLU VAL HET ACO A 301 51 HETNAM ACO ACETYL COENZYME *A FORMUL 2 ACO C23 H38 N7 O17 P3 S FORMUL 3 HOH *238(H2 O) HELIX 1 AA1 GLN A 28 GLU A 30 5 3 HELIX 2 AA2 ASP A 31 PHE A 43 1 13 HELIX 3 AA3 PHE A 44 ALA A 46 5 3 HELIX 4 AA4 GLU A 47 ASP A 54 1 8 HELIX 5 AA5 CYS A 58 LEU A 66 1 9 HELIX 6 AA6 LYS A 67 ASN A 72 5 6 HELIX 7 AA7 HIS A 111 PHE A 128 1 18 HELIX 8 AA8 ASN A 129 TYR A 134 1 6 HELIX 9 AA9 GLY A 156 GLY A 173 1 18 HELIX 10 AB1 SER A 183 LEU A 193 1 11 HELIX 11 AB2 ALA A 204 TYR A 206 5 3 SHEET 1 AA1 7 THR A 23 LEU A 26 0 SHEET 2 AA1 7 TYR A 75 VAL A 78 -1 O LYS A 76 N GLU A 25 SHEET 3 AA1 7 ILE A 84 ARG A 94 -1 O ILE A 85 N ALA A 77 SHEET 4 AA1 7 LEU A 139 VAL A 148 -1 O ASP A 142 N GLY A 91 SHEET 5 AA1 7 VAL A 176 CYS A 181 1 O HIS A 178 N LEU A 141 SHEET 6 AA1 7 GLY A 222 GLU A 229 -1 O MET A 226 N VAL A 179 SHEET 7 AA1 7 HIS A 196 GLN A 202 -1 N VAL A 198 O VAL A 225 CISPEP 1 MET A 20 PRO A 21 0 4.82 CRYST1 43.948 53.162 85.754 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022754 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018810 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011661 0.00000