HEADER RNA BINDING PROTEIN 06-OCT-23 8WO8 TITLE CRYSTAL STRUCTURE OF AN RNA-BINDING PROTEIN, FAU-1, FROM PYROCOCCUS TITLE 2 FURIOSUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBONUCLEASE FAU-1; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.26.-; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: GB:AB055587.1(THE EHHHHHH AT THE C-TARMINAL IS COMPND 7 EXPRESSION TAG); COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(P*AP*UP*A)-3'); COMPND 10 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 186497; SOURCE 4 STRAIN: JCM 8422 (DSM 3638); SOURCE 5 GENE: FAU-1, AUBA, PF0022; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-23B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 13 ORGANISM_TAXID: 562 KEYWDS RNASE E, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.KAWAI,K.OKADA,S.BABA,A.SATO,T.SAKAMOTO,A.KANAI REVDAT 1 14-FEB-24 8WO8 0 JRNL AUTH G.KAWAI,K.OKADA,S.BABA,A.SATO,T.SAKAMOTO,A.KANAI JRNL TITL HOMO-TRIMERIC STRUCTURE OF THE RIBONUCLEASE FOR RRNA JRNL TITL 2 PROCESSING, FAU-1, FROM PYROCOCCUS FURIOSUS. JRNL REF J.BIOCHEM. 2024 JRNL REFN ISSN 0021-924X JRNL PMID 38302756 JRNL DOI 10.1093/JB/MVAE010 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 18594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1043 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1269 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3330 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3757 REMARK 3 NUCLEIC ACID ATOMS : 47 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.633 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.345 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.134 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.874 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3890 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3787 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5267 ; 1.733 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8756 ; 0.548 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 461 ; 8.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 25 ; 8.647 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 715 ;20.819 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4417 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 834 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1850 ; 5.156 ; 4.980 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1850 ; 5.152 ; 4.979 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2309 ; 7.633 ; 8.937 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2310 ; 7.635 ; 8.937 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2040 ; 6.484 ; 5.661 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2038 ; 6.485 ; 5.660 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2956 ; 9.954 ;10.105 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4324 ;12.319 ;48.900 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4325 ;12.318 ;48.900 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8WO8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : BL38B1 AT SPRING-8 IS EQUIPPED REMARK 200 THE SPRING-8 STANDARD DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR (DCM) WITH REMARK 200 SI (111) AND A VERTICALLY BENT REMARK 200 CYLINDRICAL MIRROR. REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 38.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: AF-Q8U4Q7-F1-MODEL_V4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40%(V/V) PEG-300, 0.1 MM HEPES (PH REMARK 280 7.5), 0.2 M NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 59.78650 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 103.55326 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -59.78650 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 103.55326 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 VAL A -1 REMARK 465 LYS A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLU A 4 REMARK 465 ILE A 163 REMARK 465 GLY A 164 REMARK 465 GLU A 470 REMARK 465 HIS A 471 REMARK 465 HIS A 472 REMARK 465 HIS A 473 REMARK 465 HIS A 474 REMARK 465 HIS A 475 REMARK 465 HIS A 476 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 A B 3 C5' C4' O4' C3' O3' C2' O2' REMARK 470 A B 3 C1' N9 C8 N7 C5 C6 N6 REMARK 470 A B 3 N1 C2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A B 1 OP1 - P - OP2 ANGL. DEV. = -9.8 DEGREES REMARK 500 A B 1 O4' - C1' - N9 ANGL. DEV. = 5.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 32 49.64 35.61 REMARK 500 SER A 46 140.50 -30.23 REMARK 500 ILE A 80 -71.55 -103.54 REMARK 500 HIS A 92 -3.02 77.43 REMARK 500 VAL A 100 -0.57 -148.28 REMARK 500 LYS A 101 145.90 -177.66 REMARK 500 ASP A 103 -152.76 -144.02 REMARK 500 ASN A 113 -62.59 -91.17 REMARK 500 GLU A 121 -3.52 -58.04 REMARK 500 LEU A 123 59.58 -154.09 REMARK 500 LYS A 137 -72.89 -91.37 REMARK 500 ASN A 140 -179.85 169.72 REMARK 500 LEU A 148 77.97 -65.36 REMARK 500 ARG A 167 102.99 -162.03 REMARK 500 ALA A 205 128.36 -37.95 REMARK 500 GLU A 230 -39.10 173.25 REMARK 500 TYR A 277 -57.47 -151.94 REMARK 500 ASP A 278 129.89 176.62 REMARK 500 PRO A 279 -66.57 -14.58 REMARK 500 LEU A 295 56.38 -141.52 REMARK 500 LEU A 357 106.44 -40.09 REMARK 500 PHE A 362 124.79 66.99 REMARK 500 GLU A 422 -50.90 76.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 173 0.08 SIDE CHAIN REMARK 500 ARG A 261 0.07 SIDE CHAIN REMARK 500 ARG A 460 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8WO8 A -2 476 PDB 8WO8 8WO8 -2 476 DBREF 8WO8 B 1 3 PDB 8WO8 8WO8 1 3 SEQRES 1 A 479 MET VAL LYS VAL SER THR GLU SER GLU ILE ALA VAL ARG SEQRES 2 A 479 ILE ARG GLY ILE TYR SER THR ALA LEU THR LYS LEU LEU SEQRES 3 A 479 MET ASP ARG GLY PHE LYS ILE VAL GLN PRO SER ASP VAL SEQRES 4 A 479 ILE ALA GLU ARG PHE GLY ILE GLU LYS SER TYR GLU ASP SEQRES 5 A 479 PHE ASP VAL ASP ILE TYR ASP LYS ASN HIS GLY VAL THR SEQRES 6 A 479 ILE VAL GLY THR LYS VAL GLU ALA VAL LYS LYS VAL PHE SEQRES 7 A 479 GLU GLU GLU PHE ILE ASP VAL PHE PHE ARG LYS LEU PRO SEQRES 8 A 479 TYR LYS LEU HIS GLY ILE TYR LYS GLY LEU VAL VAL LYS SEQRES 9 A 479 ARG ASP ASP ARG PHE VAL TYR VAL ASP ILE GLY ASN VAL SEQRES 10 A 479 ILE GLY THR VAL LEU ILE GLU GLU LEU PRO ASP ALA ALA SEQRES 11 A 479 GLU GLY ASP GLU VAL VAL VAL GLN VAL LYS LYS HIS ASN SEQRES 12 A 479 VAL LEU PRO HIS LEU SER THR LEU ILE THR ILE PRO GLY SEQRES 13 A 479 ASP TYR ALA VAL LEU ILE PRO LYS PRO ILE GLY VAL GLN SEQRES 14 A 479 ARG HIS VAL LYS ILE SER ARG LYS ILE LYS ASP PRO GLU SEQRES 15 A 479 GLU ARG GLU ARG LEU ARG ILE LEU GLY LEU SER VAL ASP SEQRES 16 A 479 LEU GLY GLU TRP GLY VAL LEU TRP ARG THR ALA ALA ALA SEQRES 17 A 479 TYR LYS ASP TRP ASN THR LEU ARG ASP GLU LEU VAL ARG SEQRES 18 A 479 LEU SER LYS ILE ALA ASP LYS LEU LYS GLU ALA GLU LYS SEQRES 19 A 479 PHE SER ALA PRO ALA GLU ILE ILE GLU GLY ARG GLU ILE SEQRES 20 A 479 TYR GLU ILE GLU PHE GLY GLY GLY VAL LYS LYS LYS LEU SEQRES 21 A 479 ASP GLU ILE ARG ASN GLU VAL VAL PRO THR ILE GLU GLY SEQRES 22 A 479 HIS HIS GLN PHE LYS SER TYR ASP PRO GLU PHE THR LEU SEQRES 23 A 479 ALA VAL ASP VAL ALA GLU GLY ILE LEU ALA LYS LEU PRO SEQRES 24 A 479 SER GLN ARG GLN LYS ILE SER LYS GLY PHE LEU GLU ALA SEQRES 25 A 479 ILE ILE THR SER LYS GLY PRO LYS VAL GLY TRP ILE PHE SEQRES 26 A 479 THR LEU ASN HIS VAL LYS PRO ASP GLY GLN ILE ILE LYS SEQRES 27 A 479 ILE GLY PRO GLY GLU VAL ILE GLU VAL SER THR ASP PRO SEQRES 28 A 479 LEU LYS VAL THR ILE LYS ARG TYR LEU ARG PRO GLY LYS SEQRES 29 A 479 PHE TYR ASP GLY LEU GLU VAL PRO ILE GLU SER GLY ASP SEQRES 30 A 479 TYR ALA ILE THR GLU ILE GLU ALA GLY LYS TRP TRP PHE SEQRES 31 A 479 VAL HIS ARG TYR TYR ASP LYS ASP GLY ASN LEU LYS GLY SEQRES 32 A 479 GLU PHE TYR ASN ILE ASN THR PRO VAL GLU ILE TYR PRO SEQRES 33 A 479 ASP LYS ALA ARG TYR VAL ASP LEU GLU VAL ASP ILE VAL SEQRES 34 A 479 ARG TRP PRO ASP GLY LYS LYS GLU ILE ILE ASP LYS GLU SEQRES 35 A 479 LYS LEU LYS GLU HIS TYR GLU GLU GLY ILE ILE SER GLU SEQRES 36 A 479 LYS LEU TYR LYS ALA THR LEU ARG ILE ALA GLN GLU VAL SEQRES 37 A 479 TYR ASP ARG LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 3 A U A FORMUL 3 HOH *23(H2 O) HELIX 1 AA1 TYR A 15 ARG A 26 1 12 HELIX 2 AA2 SER A 34 GLY A 42 1 9 HELIX 3 AA3 LYS A 67 PHE A 79 1 13 HELIX 4 AA4 GLU A 121 LEU A 123 5 3 HELIX 5 AA5 ASP A 177 SER A 190 1 14 HELIX 6 AA6 THR A 202 ALA A 205 5 4 HELIX 7 AA7 ASP A 208 LYS A 225 1 18 HELIX 8 AA8 GLY A 250 ASN A 262 1 13 HELIX 9 AA9 GLY A 270 SER A 276 1 7 HELIX 10 AB1 ASP A 278 LEU A 295 1 18 HELIX 11 AB2 GLN A 298 LYS A 314 1 17 HELIX 12 AB3 ASP A 437 GLU A 447 1 11 HELIX 13 AB4 SER A 451 LEU A 469 1 19 SHEET 1 AA1 6 LYS A 29 ILE A 30 0 SHEET 2 AA1 6 ALA A 8 ILE A 11 1 N VAL A 9 O LYS A 29 SHEET 3 AA1 6 VAL A 52 LYS A 57 1 O VAL A 52 N ARG A 10 SHEET 4 AA1 6 GLY A 60 GLY A 65 -1 O THR A 62 N TYR A 55 SHEET 5 AA1 6 ILE A 244 PHE A 249 -1 O ILE A 247 N VAL A 61 SHEET 6 AA1 6 VAL A 82 LYS A 86 -1 N PHE A 83 O GLU A 248 SHEET 1 AA2 7 ALA A 236 ILE A 239 0 SHEET 2 AA2 7 ILE A 94 ARG A 102 -1 N ILE A 94 O ILE A 238 SHEET 3 AA2 7 GLU A 131 LYS A 138 -1 O VAL A 134 N TYR A 95 SHEET 4 AA2 7 HIS A 144 SER A 146 -1 O HIS A 144 N LYS A 137 SHEET 5 AA2 7 ILE A 115 LEU A 119 1 N THR A 117 O LEU A 145 SHEET 6 AA2 7 PHE A 106 ASP A 110 -1 N VAL A 109 O GLY A 116 SHEET 7 AA2 7 ILE A 94 ARG A 102 -1 N LYS A 101 O TYR A 108 SHEET 1 AA3 4 ILE A 151 PRO A 152 0 SHEET 2 AA3 4 ALA A 156 PRO A 160 -1 O LEU A 158 N ILE A 151 SHEET 3 AA3 4 TRP A 196 TRP A 200 -1 O GLY A 197 N ILE A 159 SHEET 4 AA3 4 VAL A 169 ILE A 171 1 N LYS A 170 O TRP A 200 SHEET 1 AA410 GLU A 410 ILE A 411 0 SHEET 2 AA410 LYS A 433 ILE A 436 0 SHEET 3 AA410 ILE A 321 VAL A 327 0 SHEET 4 AA410 ILE A 333 SER A 345 -1 O ILE A 334 N HIS A 326 SHEET 5 AA410 LYS A 350 TYR A 356 -1 O THR A 352 N ILE A 342 SHEET 6 AA410 TYR A 375 GLU A 381 -1 O THR A 378 N ILE A 353 SHEET 7 AA410 TRP A 386 TYR A 392 -1 O VAL A 388 N GLU A 379 SHEET 8 AA410 LEU A 398 ASN A 406 -1 O PHE A 402 N HIS A 389 SHEET 9 AA410 LYS A 415 ARG A 427 -1 O ILE A 425 N TYR A 403 SHEET 10 AA410 LYS A 433 ILE A 436 -1 O GLU A 434 N VAL A 426 CISPEP 1 ALA A 234 PRO A 235 0 -9.35 CISPEP 2 GLY A 337 PRO A 338 0 22.36 CISPEP 3 ASP A 347 PRO A 348 0 9.76 CRYST1 119.573 119.573 93.472 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008363 0.004828 0.000000 0.00000 SCALE2 0.000000 0.009657 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010698 0.00000