HEADER VIRAL PROTEIN 11-OCT-23 8WQK TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF PEDV NUCLEOCAPSID TITLE 2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEOPROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F, G, H; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORCINE EPIDEMIC DIARRHEA VIRUS; SOURCE 3 ORGANISM_TAXID: 28295; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PEDV, NUCLEOCAPSID PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.T.ZHANG,Z.JIAO,R.LIANG,Y.J.SHI,G.Q.PENG REVDAT 1 16-OCT-24 8WQK 0 JRNL AUTH J.T.ZHANG,Z.JIAO,R.LIANG,Y.J.SHI,G.Q.PENG JRNL TITL CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF PEDV JRNL TITL 2 NUCLEOCAPSID PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 20089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 1049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 5.5000 0.99 2933 161 0.1997 0.2287 REMARK 3 2 5.4900 - 4.3700 1.00 2905 156 0.1851 0.2109 REMARK 3 3 4.3700 - 3.8200 0.90 2617 129 0.1935 0.2664 REMARK 3 4 3.8200 - 3.4700 0.90 2585 140 0.2447 0.3131 REMARK 3 5 3.4700 - 3.2200 0.88 2542 134 0.2526 0.3080 REMARK 3 6 3.2200 - 3.0300 1.00 2850 185 0.2639 0.3379 REMARK 3 7 3.0300 - 2.8800 0.91 2608 144 0.3111 0.4234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.028 6227 REMARK 3 ANGLE : 1.887 8434 REMARK 3 CHIRALITY : 0.085 909 REMARK 3 PLANARITY : 0.020 1120 REMARK 3 DIHEDRAL : 18.879 2248 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 67.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.3 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.15600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.83000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE 0.1 M BIS REMARK 280 -TRIS:HCL PH 6.5 25% (W/V) PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.75100 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9720 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LEU A 104 REMARK 465 GLU A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108 REMARK 465 HIS A 109 REMARK 465 HIS A 110 REMARK 465 HIS A 111 REMARK 465 HIS A 112 REMARK 465 HIS A 113 REMARK 465 MET B 0 REMARK 465 ARG B 1 REMARK 465 ASP B 2 REMARK 465 ARG B 10 REMARK 465 ALA B 72 REMARK 465 LEU B 104 REMARK 465 GLU B 105 REMARK 465 HIS B 106 REMARK 465 HIS B 107 REMARK 465 HIS B 108 REMARK 465 HIS B 109 REMARK 465 HIS B 110 REMARK 465 HIS B 111 REMARK 465 HIS B 112 REMARK 465 HIS B 113 REMARK 465 MET C 0 REMARK 465 ARG C 1 REMARK 465 LEU C 3 REMARK 465 LEU C 104 REMARK 465 GLU C 105 REMARK 465 HIS C 106 REMARK 465 HIS C 107 REMARK 465 HIS C 108 REMARK 465 HIS C 109 REMARK 465 HIS C 110 REMARK 465 HIS C 111 REMARK 465 HIS C 112 REMARK 465 HIS C 113 REMARK 465 MET D 0 REMARK 465 ARG D 1 REMARK 465 ASP D 2 REMARK 465 ARG D 10 REMARK 465 LEU D 104 REMARK 465 GLU D 105 REMARK 465 HIS D 106 REMARK 465 HIS D 107 REMARK 465 HIS D 108 REMARK 465 HIS D 109 REMARK 465 HIS D 110 REMARK 465 HIS D 111 REMARK 465 HIS D 112 REMARK 465 HIS D 113 REMARK 465 MET E 0 REMARK 465 ARG E 1 REMARK 465 ASP E 2 REMARK 465 LEU E 3 REMARK 465 LYS E 4 REMARK 465 GLU E 16 REMARK 465 LEU E 104 REMARK 465 GLU E 105 REMARK 465 HIS E 106 REMARK 465 HIS E 107 REMARK 465 HIS E 108 REMARK 465 HIS E 109 REMARK 465 HIS E 110 REMARK 465 HIS E 111 REMARK 465 HIS E 112 REMARK 465 HIS E 113 REMARK 465 MET F 0 REMARK 465 ARG F 1 REMARK 465 ASP F 2 REMARK 465 LEU F 3 REMARK 465 LYS F 4 REMARK 465 ARG F 10 REMARK 465 ARG F 11 REMARK 465 LEU F 104 REMARK 465 GLU F 105 REMARK 465 HIS F 106 REMARK 465 HIS F 107 REMARK 465 HIS F 108 REMARK 465 HIS F 109 REMARK 465 HIS F 110 REMARK 465 HIS F 111 REMARK 465 HIS F 112 REMARK 465 HIS F 113 REMARK 465 MET G 0 REMARK 465 ARG G 10 REMARK 465 ARG G 11 REMARK 465 LEU G 104 REMARK 465 GLU G 105 REMARK 465 HIS G 106 REMARK 465 HIS G 107 REMARK 465 HIS G 108 REMARK 465 HIS G 109 REMARK 465 HIS G 110 REMARK 465 HIS G 111 REMARK 465 HIS G 112 REMARK 465 HIS G 113 REMARK 465 MET H 0 REMARK 465 ARG H 1 REMARK 465 ARG H 10 REMARK 465 LEU H 104 REMARK 465 GLU H 105 REMARK 465 HIS H 106 REMARK 465 HIS H 107 REMARK 465 HIS H 108 REMARK 465 HIS H 109 REMARK 465 HIS H 110 REMARK 465 HIS H 111 REMARK 465 HIS H 112 REMARK 465 HIS H 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG B 69 OE1 GLU D 8 1455 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 119.02 -169.61 REMARK 500 SER A 18 -160.10 -105.24 REMARK 500 ILE B 6 117.59 -35.39 REMARK 500 PRO B 13 108.46 -59.85 REMARK 500 SER B 18 -153.00 -110.46 REMARK 500 ARG C 10 28.10 -143.21 REMARK 500 LYS C 14 119.31 -166.52 REMARK 500 SER C 18 -152.12 -110.95 REMARK 500 LYS C 40 -21.57 -144.88 REMARK 500 SER D 18 -160.61 -109.71 REMARK 500 SER E 18 -153.70 -110.48 REMARK 500 ASP E 73 38.72 -140.75 REMARK 500 LYS F 14 90.61 -161.70 REMARK 500 GLU F 39 -60.92 -100.60 REMARK 500 LEU F 53 58.48 -106.88 REMARK 500 LYS G 14 113.07 -164.36 REMARK 500 SER G 18 -151.59 -114.01 REMARK 500 LYS H 4 2.79 -66.32 REMARK 500 LYS H 14 112.96 -168.32 REMARK 500 ASN H 17 57.22 -105.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 11 0.14 SIDE CHAIN REMARK 500 ARG B 69 0.19 SIDE CHAIN REMARK 500 ARG C 26 0.20 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8WQK A 1 103 UNP Q07499 NCAP_PEDV7 273 375 DBREF 8WQK B 1 103 UNP Q07499 NCAP_PEDV7 273 375 DBREF 8WQK C 1 103 UNP Q07499 NCAP_PEDV7 273 375 DBREF 8WQK D 1 103 UNP Q07499 NCAP_PEDV7 273 375 DBREF 8WQK E 1 103 UNP Q07499 NCAP_PEDV7 273 375 DBREF 8WQK F 1 103 UNP Q07499 NCAP_PEDV7 273 375 DBREF 8WQK G 1 103 UNP Q07499 NCAP_PEDV7 273 375 DBREF 8WQK H 1 103 UNP Q07499 NCAP_PEDV7 273 375 SEQADV 8WQK MET A 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU A 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU A 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS A 113 UNP Q07499 EXPRESSION TAG SEQADV 8WQK MET B 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU B 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU B 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS B 113 UNP Q07499 EXPRESSION TAG SEQADV 8WQK MET C 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU C 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU C 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS C 113 UNP Q07499 EXPRESSION TAG SEQADV 8WQK MET D 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU D 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU D 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS D 113 UNP Q07499 EXPRESSION TAG SEQADV 8WQK MET E 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU E 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU E 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS E 113 UNP Q07499 EXPRESSION TAG SEQADV 8WQK MET F 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU F 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU F 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS F 113 UNP Q07499 EXPRESSION TAG SEQADV 8WQK MET G 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU G 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU G 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS G 113 UNP Q07499 EXPRESSION TAG SEQADV 8WQK MET H 0 UNP Q07499 INITIATING METHIONINE SEQADV 8WQK LEU H 104 UNP Q07499 EXPRESSION TAG SEQADV 8WQK GLU H 105 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 106 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 107 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 108 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 109 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 110 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 111 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 112 UNP Q07499 EXPRESSION TAG SEQADV 8WQK HIS H 113 UNP Q07499 EXPRESSION TAG SEQRES 1 A 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 A 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 A 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 A 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 A 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 A 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 A 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 A 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 A 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 B 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 B 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 B 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 B 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 B 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 B 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 B 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 B 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 C 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 C 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 C 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 C 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 C 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 C 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 C 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 C 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 D 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 D 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 D 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 D 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 D 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 D 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 D 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 D 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 D 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 E 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 E 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 E 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 E 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 E 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 E 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 E 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 E 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 E 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 F 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 F 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 F 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 F 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 F 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 F 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 F 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 F 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 F 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 G 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 G 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 G 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 G 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 G 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 G 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 G 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 G 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 G 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 H 114 MET ARG ASP LEU LYS ASP ILE PRO GLU TRP ARG ARG ILE SEQRES 2 H 114 PRO LYS GLY GLU ASN SER VAL ALA ALA CYS PHE GLY PRO SEQRES 3 H 114 ARG GLY GLY PHE LYS ASN PHE GLY ASP ALA GLU PHE VAL SEQRES 4 H 114 GLU LYS GLY VAL ASP ALA SER GLY TYR ALA GLN ILE ALA SEQRES 5 H 114 SER LEU ALA PRO ASN VAL ALA ALA LEU LEU PHE GLY GLY SEQRES 6 H 114 ASN VAL ALA VAL ARG GLU LEU ALA ASP SER TYR GLU ILE SEQRES 7 H 114 THR TYR ASN TYR LYS MET THR VAL PRO LYS SER ASP PRO SEQRES 8 H 114 ASN VAL GLU LEU LEU VAL SER GLN VAL ASP ALA PHE LYS SEQRES 9 H 114 LEU GLU HIS HIS HIS HIS HIS HIS HIS HIS FORMUL 9 HOH *95(H2 O) HELIX 1 AA1 PRO A 7 ARG A 11 5 5 HELIX 2 AA2 SER A 18 GLY A 24 1 7 HELIX 3 AA3 ASP A 34 GLY A 41 1 8 HELIX 4 AA4 VAL A 42 ALA A 44 5 3 HELIX 5 AA5 GLY A 46 SER A 52 1 7 HELIX 6 AA6 ASN A 56 GLY A 63 1 8 HELIX 7 AA7 ASN A 91 SER A 97 1 7 HELIX 8 AA8 SER B 18 GLY B 24 1 7 HELIX 9 AA9 ASP B 34 GLY B 41 1 8 HELIX 10 AB1 VAL B 42 ALA B 44 5 3 HELIX 11 AB2 GLY B 46 SER B 52 1 7 HELIX 12 AB3 ASN B 56 GLY B 63 1 8 HELIX 13 AB4 ASN B 91 VAL B 99 1 9 HELIX 14 AB5 PRO C 7 ARG C 11 5 5 HELIX 15 AB6 SER C 18 PHE C 23 1 6 HELIX 16 AB7 ASP C 34 GLU C 39 1 6 HELIX 17 AB8 LYS C 40 ALA C 44 5 5 HELIX 18 AB9 GLY C 46 SER C 52 1 7 HELIX 19 AC1 ASN C 56 GLY C 64 1 9 HELIX 20 AC2 ASN C 91 VAL C 99 1 9 HELIX 21 AC3 SER D 18 GLY D 24 1 7 HELIX 22 AC4 ASP D 34 GLY D 41 1 8 HELIX 23 AC5 VAL D 42 ALA D 44 5 3 HELIX 24 AC6 GLY D 46 SER D 52 1 7 HELIX 25 AC7 ASN D 56 GLY D 64 1 9 HELIX 26 AC8 ASN D 91 VAL D 99 1 9 HELIX 27 AC9 PRO E 7 ARG E 11 5 5 HELIX 28 AD1 SER E 18 GLY E 24 1 7 HELIX 29 AD2 ASP E 34 GLY E 41 1 8 HELIX 30 AD3 VAL E 42 ALA E 44 5 3 HELIX 31 AD4 GLY E 46 SER E 52 1 7 HELIX 32 AD5 ASN E 56 GLY E 63 1 8 HELIX 33 AD6 ASN E 91 VAL E 99 1 9 HELIX 34 AD7 SER F 18 GLY F 24 1 7 HELIX 35 AD8 ASP F 34 GLY F 41 1 8 HELIX 36 AD9 VAL F 42 ALA F 44 5 3 HELIX 37 AE1 GLY F 46 LEU F 53 1 8 HELIX 38 AE2 ASN F 56 GLY F 63 1 8 HELIX 39 AE3 ASN F 91 VAL F 99 1 9 HELIX 40 AE4 SER G 18 GLY G 24 1 7 HELIX 41 AE5 ASP G 34 GLY G 41 1 8 HELIX 42 AE6 VAL G 42 ALA G 44 5 3 HELIX 43 AE7 GLY G 46 SER G 52 1 7 HELIX 44 AE8 ASN G 56 GLY G 63 1 8 HELIX 45 AE9 ASN G 91 VAL G 99 1 9 HELIX 46 AF1 SER H 18 GLY H 24 1 7 HELIX 47 AF2 ASP H 34 GLY H 41 1 8 HELIX 48 AF3 VAL H 42 ALA H 44 5 3 HELIX 49 AF4 GLY H 46 ALA H 51 1 6 HELIX 50 AF5 SER H 52 ALA H 54 5 3 HELIX 51 AF6 ASN H 56 GLY H 63 1 8 HELIX 52 AF7 ASN H 91 VAL H 99 1 9 SHEET 1 AA1 4 ASN A 65 GLU A 70 0 SHEET 2 AA1 4 SER A 74 PRO A 86 -1 O GLU A 76 N ARG A 69 SHEET 3 AA1 4 SER D 74 PRO D 86 -1 O VAL D 85 N TYR A 75 SHEET 4 AA1 4 ASN D 65 GLU D 70 -1 N ASN D 65 O ASN D 80 SHEET 1 AA2 4 ASN B 65 GLU B 70 0 SHEET 2 AA2 4 SER B 74 PRO B 86 -1 O THR B 78 N ALA B 67 SHEET 3 AA2 4 SER G 74 PRO G 86 -1 O MET G 83 N ILE B 77 SHEET 4 AA2 4 ASN G 65 GLU G 70 -1 N ARG G 69 O GLU G 76 SHEET 1 AA3 4 ASN C 65 GLU C 70 0 SHEET 2 AA3 4 SER C 74 PRO C 86 -1 O GLU C 76 N ARG C 69 SHEET 3 AA3 4 SER E 74 PRO E 86 -1 O TYR E 81 N TYR C 79 SHEET 4 AA3 4 ASN E 65 GLU E 70 -1 N ARG E 69 O GLU E 76 SHEET 1 AA4 4 ASN F 65 GLU F 70 0 SHEET 2 AA4 4 SER F 74 PRO F 86 -1 O GLU F 76 N ARG F 69 SHEET 3 AA4 4 SER H 74 PRO H 86 -1 O MET H 83 N ILE F 77 SHEET 4 AA4 4 ASN H 65 GLU H 70 -1 N ALA H 67 O THR H 78 CRYST1 52.920 93.502 97.200 90.00 97.37 90.00 P 1 21 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018896 0.000000 0.002444 0.00000 SCALE2 0.000000 0.010695 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010374 0.00000