HEADER TRANSCRIPTION 14-OCT-23 8WRG TITLE SOLUTION STRUCTURE OF THE TAD DOMAIN (450-504) OF HUMAN TITLE 2 TRANSCRIPTIONAL COACTIVATOR YAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL COACTIVATOR YAP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 VARIANT: YAP1-2GAMMA; SOURCE 6 GENE: YAP1; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS TRANSCRIPTIONAL COACTIVATOR, TRANSCRIPTION FACTOR COMPLEX, KEYWDS 2 TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR H.ZHANG,Y.LI REVDAT 1 16-OCT-24 8WRG 0 JRNL AUTH H.ZHANG,Y.LI JRNL TITL SOLUTION STRUCTURE OF THE TAD DOMAIN (450-504) OF HUMAN JRNL TITL 2 TRANSCRIPTIONAL COACTIVATOR YAP1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS ARIA2.3 REMARK 3 AUTHORS : WOLFGANG RIEPING, MICHAEL HABECK, BENJAMIN REMARK 3 BARDIAUX, AYMERIC BERNARD, THERESE E. MALLIAVIN REMARK 3 AND MICHAEL NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300040862. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.95 MM [U-99% 13C; U-99% 15N] REMARK 210 YAP-TAD, 20 MM HEPES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 % V/V [U-99% REMARK 210 2H] D2O, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D CBCANH; 3D HNCO; 3D H(CCO)NH; REMARK 210 3D C(CO)NH; 3D HBHA(CO)NH; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRFAM-SPARKY POKY BUILD REMARK 210 20230213 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 23 -67.40 -109.67 REMARK 500 1 SER A 28 78.85 57.25 REMARK 500 1 GLN A 30 -64.07 -138.11 REMARK 500 1 GLU A 31 87.29 57.55 REMARK 500 1 THR A 48 91.96 60.27 REMARK 500 1 LYS A 49 -32.82 -149.72 REMARK 500 2 VAL A 8 -35.17 -144.11 REMARK 500 2 THR A 12 -57.98 -137.89 REMARK 500 2 LEU A 13 91.64 56.80 REMARK 500 2 ASN A 19 -86.76 60.75 REMARK 500 2 ILE A 20 26.44 -141.63 REMARK 500 2 GLU A 23 31.89 -95.63 REMARK 500 2 ALA A 32 -73.84 -155.52 REMARK 500 2 SER A 34 85.66 -160.35 REMARK 500 2 SER A 35 -37.17 -147.51 REMARK 500 2 LEU A 38 -28.55 -140.30 REMARK 500 2 THR A 48 -17.85 -163.80 REMARK 500 2 SER A 54 18.08 -149.90 REMARK 500 2 TRP A 58 95.24 -66.22 REMARK 500 3 ASN A 7 90.34 56.62 REMARK 500 3 VAL A 8 -70.72 -79.55 REMARK 500 3 LEU A 10 -57.45 -158.35 REMARK 500 3 MET A 18 82.87 56.50 REMARK 500 3 SER A 28 -20.75 -149.32 REMARK 500 3 ALA A 32 -18.17 -147.09 REMARK 500 3 SER A 35 96.39 59.96 REMARK 500 3 ILE A 37 -66.08 -123.22 REMARK 500 3 LEU A 38 90.06 58.25 REMARK 500 3 LYS A 49 -61.09 -167.24 REMARK 500 3 LEU A 50 93.60 57.60 REMARK 500 3 GLU A 53 76.78 54.99 REMARK 500 4 SER A 4 70.62 57.03 REMARK 500 4 LEU A 29 75.76 -100.18 REMARK 500 4 ASP A 36 92.49 57.40 REMARK 500 4 ALA A 46 19.70 58.36 REMARK 500 4 LYS A 49 -172.02 57.47 REMARK 500 4 LEU A 50 95.87 -164.49 REMARK 500 4 LEU A 56 45.52 -94.24 REMARK 500 5 SER A 4 86.62 57.70 REMARK 500 5 ASP A 9 83.88 54.52 REMARK 500 5 LEU A 10 -60.57 -103.37 REMARK 500 5 THR A 12 -46.27 -132.32 REMARK 500 5 LEU A 13 -34.80 -146.75 REMARK 500 5 GLU A 14 82.17 52.44 REMARK 500 5 ASN A 19 -52.60 -125.34 REMARK 500 5 SER A 35 -54.09 -152.38 REMARK 500 5 ALA A 47 51.81 -94.17 REMARK 500 5 SER A 54 -15.06 -144.48 REMARK 500 5 LEU A 56 96.75 59.71 REMARK 500 6 ASP A 9 63.45 -159.58 REMARK 500 REMARK 500 THIS ENTRY HAS 224 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 51948 RELATED DB: BMRB DBREF 8WRG A 5 59 UNP P46937 YAP1_HUMAN 450 504 SEQADV 8WRG MET A -4 UNP P46937 INITIATING METHIONINE SEQADV 8WRG HIS A -3 UNP P46937 EXPRESSION TAG SEQADV 8WRG HIS A -2 UNP P46937 EXPRESSION TAG SEQADV 8WRG HIS A -1 UNP P46937 EXPRESSION TAG SEQADV 8WRG HIS A 0 UNP P46937 EXPRESSION TAG SEQADV 8WRG HIS A 1 UNP P46937 EXPRESSION TAG SEQADV 8WRG HIS A 2 UNP P46937 EXPRESSION TAG SEQADV 8WRG GLY A 3 UNP P46937 EXPRESSION TAG SEQADV 8WRG SER A 4 UNP P46937 EXPRESSION TAG SEQRES 1 A 64 MET HIS HIS HIS HIS HIS HIS GLY SER GLY THR ASN VAL SEQRES 2 A 64 ASP LEU GLY THR LEU GLU GLY ASP GLY MET ASN ILE GLU SEQRES 3 A 64 GLY GLU GLU LEU MET PRO SER LEU GLN GLU ALA LEU SER SEQRES 4 A 64 SER ASP ILE LEU ASN ASP MET GLU SER VAL LEU ALA ALA SEQRES 5 A 64 THR LYS LEU ASP LYS GLU SER PHE LEU THR TRP LEU HELIX 1 AA1 ASP A 40 LEU A 45 1 6 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1