HEADER CELL CYCLE 16-OCT-23 8WS0 TITLE CRYSTAL STRUCTURE OF HUMAN NEK7 S195D MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE NEK7; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NEVER IN MITOSIS A-RELATED KINASE 7,NIMA-RELATED PROTEIN COMPND 5 KINASE 7; COMPND 6 EC: 2.7.11.34; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NEK7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, COMPLEX, AUTOINHIBITORY, HUMAN, INFLAMMASOMES, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR S.BIJPURIA,S.ATHRESH,R.SUBBIAH,A.MOLLARD,D.BEARSS REVDAT 1 16-APR-25 8WS0 0 JRNL AUTH S.BIJPURIA,S.ATHRESH,R.SUBBIAH,A.MOLLARD,D.BEARSS JRNL TITL CRYSTAL STRUCTURE OF HUMAN NEK7 S195D MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 39008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1948 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.17 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2704 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4324 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.82000 REMARK 3 B12 (A**2) : 0.28000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.192 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.178 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.265 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4449 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4241 ; 0.004 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6016 ; 1.917 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9782 ; 1.419 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 543 ; 6.831 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 236 ;32.829 ;22.076 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 795 ;16.020 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;24.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 563 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4986 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1020 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2160 ; 3.871 ; 4.596 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2159 ; 3.871 ; 4.595 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2698 ; 5.271 ; 6.866 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2699 ; 5.270 ; 6.868 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2289 ; 4.671 ; 5.126 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2290 ; 4.670 ; 5.127 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3316 ; 6.991 ; 7.463 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4953 ; 9.012 ;53.546 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4933 ; 9.013 ;53.415 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 22.9521 25.2949 -24.3789 REMARK 3 T TENSOR REMARK 3 T11: 0.0979 T22: 0.0059 REMARK 3 T33: 0.0891 T12: -0.0036 REMARK 3 T13: 0.0037 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.0393 L22: 0.2068 REMARK 3 L33: 0.3181 L12: -0.1285 REMARK 3 L13: 0.0220 L23: 0.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: 0.0277 S13: -0.0958 REMARK 3 S21: -0.1069 S22: 0.0110 S23: 0.0368 REMARK 3 S31: -0.0639 S32: 0.0211 S33: 0.0663 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 19 B 299 REMARK 3 ORIGIN FOR THE GROUP (A): 32.5051 6.0035 0.1178 REMARK 3 T TENSOR REMARK 3 T11: 0.0463 T22: 0.0949 REMARK 3 T33: 0.1652 T12: 0.0547 REMARK 3 T13: 0.0137 T23: -0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.3230 L22: 4.2342 REMARK 3 L33: 0.8971 L12: 0.2060 REMARK 3 L13: -0.2920 L23: -1.4491 REMARK 3 S TENSOR REMARK 3 S11: -0.0106 S12: 0.0030 S13: -0.0291 REMARK 3 S21: -0.0598 S22: 0.0311 S23: 0.5784 REMARK 3 S31: 0.0638 S32: -0.0428 S33: -0.0205 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8WS0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300039425. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953643918037 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41004 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.117 REMARK 200 RESOLUTION RANGE LOW (A) : 44.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 20.00 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.14900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.02933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.05867 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.05867 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.02933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 GLN A 6 REMARK 465 GLY A 7 REMARK 465 MET A 8 REMARK 465 GLN A 9 REMARK 465 GLY A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 GLN A 15 REMARK 465 PHE A 16 REMARK 465 GLN A 17 REMARK 465 PRO A 18 REMARK 465 GLN A 19 REMARK 465 PHE A 186 REMARK 465 SER A 187 REMARK 465 SER A 188 REMARK 465 LYS A 189 REMARK 465 THR A 190 REMARK 465 THR A 191 REMARK 465 ALA A 192 REMARK 465 ALA A 193 REMARK 465 HIS A 194 REMARK 465 ASP A 195 REMARK 465 LEU A 196 REMARK 465 VAL A 197 REMARK 465 GLY A 198 REMARK 465 THR A 199 REMARK 465 SER A 301 REMARK 465 SER A 302 REMARK 465 LEU A 303 REMARK 465 GLU A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 HIS A 308 REMARK 465 HIS A 309 REMARK 465 HIS A 310 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 SER B 5 REMARK 465 GLN B 6 REMARK 465 GLY B 7 REMARK 465 MET B 8 REMARK 465 GLN B 9 REMARK 465 GLY B 10 REMARK 465 PRO B 11 REMARK 465 PRO B 12 REMARK 465 VAL B 13 REMARK 465 PRO B 14 REMARK 465 GLN B 15 REMARK 465 PHE B 16 REMARK 465 GLN B 17 REMARK 465 PRO B 18 REMARK 465 SER B 188 REMARK 465 LYS B 189 REMARK 465 THR B 190 REMARK 465 THR B 191 REMARK 465 ALA B 192 REMARK 465 ALA B 193 REMARK 465 HIS B 194 REMARK 465 ASP B 195 REMARK 465 LEU B 196 REMARK 465 VAL B 197 REMARK 465 GLY B 198 REMARK 465 ALA B 300 REMARK 465 SER B 301 REMARK 465 SER B 302 REMARK 465 LEU B 303 REMARK 465 GLU B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307 REMARK 465 HIS B 308 REMARK 465 HIS B 309 REMARK 465 HIS B 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 GLN B 19 CG CD OE1 NE2 REMARK 470 LYS B 130 CG CD CE NZ REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 132 CG CD1 CD2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 THR B 199 OG1 CG2 REMARK 470 MET B 241 CG SD CE REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 50 CZ NH1 NH2 REMARK 480 LYS A 124 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 50 NE ARG A 50 CZ -0.139 REMARK 500 LYS A 124 CD LYS A 124 CE 0.238 REMARK 500 GLU B 135 CG GLU B 135 CD 0.098 REMARK 500 ARG B 136 C ARG B 136 O 0.242 REMARK 500 CYS B 146 C CYS B 146 O 0.135 REMARK 500 TYR B 263 CB TYR B 263 CG 0.116 REMARK 500 HIS B 296 ND1 HIS B 296 CE1 -0.115 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 50 CD - NE - CZ ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG A 50 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 50 NE - CZ - NH2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 56 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 114 -68.45 -101.17 REMARK 500 ASP A 115 17.97 43.78 REMARK 500 ARG A 160 -8.86 88.07 REMARK 500 ASP A 161 59.66 -151.63 REMARK 500 ASP A 179 70.94 -164.76 REMARK 500 ASN A 211 -72.40 -62.68 REMARK 500 CYS A 253 58.15 37.35 REMARK 500 LYS B 128 -5.56 -57.87 REMARK 500 LYS B 128 -5.67 -57.87 REMARK 500 LYS B 130 78.80 30.48 REMARK 500 LYS B 130 78.80 28.16 REMARK 500 ARG B 160 -17.05 86.54 REMARK 500 ASP B 161 68.86 -152.01 REMARK 500 REMARK 500 REMARK: NULL DBREF 8WS0 A 1 302 UNP Q8TDX7 NEK7_HUMAN 1 302 DBREF 8WS0 B 1 302 UNP Q8TDX7 NEK7_HUMAN 1 302 SEQADV 8WS0 ASP A 195 UNP Q8TDX7 SER 195 ENGINEERED MUTATION SEQADV 8WS0 LEU A 303 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 GLU A 304 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS A 305 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS A 306 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS A 307 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS A 308 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS A 309 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS A 310 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 ASP B 195 UNP Q8TDX7 SER 195 ENGINEERED MUTATION SEQADV 8WS0 LEU B 303 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 GLU B 304 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS B 305 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS B 306 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS B 307 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS B 308 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS B 309 UNP Q8TDX7 EXPRESSION TAG SEQADV 8WS0 HIS B 310 UNP Q8TDX7 EXPRESSION TAG SEQRES 1 A 310 MET ASP GLU GLN SER GLN GLY MET GLN GLY PRO PRO VAL SEQRES 2 A 310 PRO GLN PHE GLN PRO GLN LYS ALA LEU ARG PRO ASP MET SEQRES 3 A 310 GLY TYR ASN THR LEU ALA ASN PHE ARG ILE GLU LYS LYS SEQRES 4 A 310 ILE GLY ARG GLY GLN PHE SER GLU VAL TYR ARG ALA ALA SEQRES 5 A 310 CYS LEU LEU ASP GLY VAL PRO VAL ALA LEU LYS LYS VAL SEQRES 6 A 310 GLN ILE PHE ASP LEU MET ASP ALA LYS ALA ARG ALA ASP SEQRES 7 A 310 CYS ILE LYS GLU ILE ASP LEU LEU LYS GLN LEU ASN HIS SEQRES 8 A 310 PRO ASN VAL ILE LYS TYR TYR ALA SER PHE ILE GLU ASP SEQRES 9 A 310 ASN GLU LEU ASN ILE VAL LEU GLU LEU ALA ASP ALA GLY SEQRES 10 A 310 ASP LEU SER ARG MET ILE LYS HIS PHE LYS LYS GLN LYS SEQRES 11 A 310 ARG LEU ILE PRO GLU ARG THR VAL TRP LYS TYR PHE VAL SEQRES 12 A 310 GLN LEU CYS SER ALA LEU GLU HIS MET HIS SER ARG ARG SEQRES 13 A 310 VAL MET HIS ARG ASP ILE LYS PRO ALA ASN VAL PHE ILE SEQRES 14 A 310 THR ALA THR GLY VAL VAL LYS LEU GLY ASP LEU GLY LEU SEQRES 15 A 310 GLY ARG PHE PHE SER SER LYS THR THR ALA ALA HIS ASP SEQRES 16 A 310 LEU VAL GLY THR PRO TYR TYR MET SER PRO GLU ARG ILE SEQRES 17 A 310 HIS GLU ASN GLY TYR ASN PHE LYS SER ASP ILE TRP SER SEQRES 18 A 310 LEU GLY CYS LEU LEU TYR GLU MET ALA ALA LEU GLN SER SEQRES 19 A 310 PRO PHE TYR GLY ASP LYS MET ASN LEU TYR SER LEU CYS SEQRES 20 A 310 LYS LYS ILE GLU GLN CYS ASP TYR PRO PRO LEU PRO SER SEQRES 21 A 310 ASP HIS TYR SER GLU GLU LEU ARG GLN LEU VAL ASN MET SEQRES 22 A 310 CYS ILE ASN PRO ASP PRO GLU LYS ARG PRO ASP VAL THR SEQRES 23 A 310 TYR VAL TYR ASP VAL ALA LYS ARG MET HIS ALA CYS THR SEQRES 24 A 310 ALA SER SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 310 MET ASP GLU GLN SER GLN GLY MET GLN GLY PRO PRO VAL SEQRES 2 B 310 PRO GLN PHE GLN PRO GLN LYS ALA LEU ARG PRO ASP MET SEQRES 3 B 310 GLY TYR ASN THR LEU ALA ASN PHE ARG ILE GLU LYS LYS SEQRES 4 B 310 ILE GLY ARG GLY GLN PHE SER GLU VAL TYR ARG ALA ALA SEQRES 5 B 310 CYS LEU LEU ASP GLY VAL PRO VAL ALA LEU LYS LYS VAL SEQRES 6 B 310 GLN ILE PHE ASP LEU MET ASP ALA LYS ALA ARG ALA ASP SEQRES 7 B 310 CYS ILE LYS GLU ILE ASP LEU LEU LYS GLN LEU ASN HIS SEQRES 8 B 310 PRO ASN VAL ILE LYS TYR TYR ALA SER PHE ILE GLU ASP SEQRES 9 B 310 ASN GLU LEU ASN ILE VAL LEU GLU LEU ALA ASP ALA GLY SEQRES 10 B 310 ASP LEU SER ARG MET ILE LYS HIS PHE LYS LYS GLN LYS SEQRES 11 B 310 ARG LEU ILE PRO GLU ARG THR VAL TRP LYS TYR PHE VAL SEQRES 12 B 310 GLN LEU CYS SER ALA LEU GLU HIS MET HIS SER ARG ARG SEQRES 13 B 310 VAL MET HIS ARG ASP ILE LYS PRO ALA ASN VAL PHE ILE SEQRES 14 B 310 THR ALA THR GLY VAL VAL LYS LEU GLY ASP LEU GLY LEU SEQRES 15 B 310 GLY ARG PHE PHE SER SER LYS THR THR ALA ALA HIS ASP SEQRES 16 B 310 LEU VAL GLY THR PRO TYR TYR MET SER PRO GLU ARG ILE SEQRES 17 B 310 HIS GLU ASN GLY TYR ASN PHE LYS SER ASP ILE TRP SER SEQRES 18 B 310 LEU GLY CYS LEU LEU TYR GLU MET ALA ALA LEU GLN SER SEQRES 19 B 310 PRO PHE TYR GLY ASP LYS MET ASN LEU TYR SER LEU CYS SEQRES 20 B 310 LYS LYS ILE GLU GLN CYS ASP TYR PRO PRO LEU PRO SER SEQRES 21 B 310 ASP HIS TYR SER GLU GLU LEU ARG GLN LEU VAL ASN MET SEQRES 22 B 310 CYS ILE ASN PRO ASP PRO GLU LYS ARG PRO ASP VAL THR SEQRES 23 B 310 TYR VAL TYR ASP VAL ALA LYS ARG MET HIS ALA CYS THR SEQRES 24 B 310 ALA SER SER LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *190(H2 O) HELIX 1 AA1 ARG A 23 ALA A 32 5 10 HELIX 2 AA2 ASP A 72 LYS A 87 1 16 HELIX 3 AA3 ASP A 118 GLN A 129 1 12 HELIX 4 AA4 PRO A 134 ARG A 155 1 22 HELIX 5 AA5 LYS A 163 ALA A 165 5 3 HELIX 6 AA6 SER A 204 HIS A 209 1 6 HELIX 7 AA7 ASN A 214 LEU A 232 1 19 HELIX 8 AA8 ASN A 242 GLN A 252 1 11 HELIX 9 AA9 SER A 264 ILE A 275 1 12 HELIX 10 AB1 ASP A 278 ARG A 282 5 5 HELIX 11 AB2 ASP A 284 ALA A 300 1 17 HELIX 12 AB3 ARG B 23 GLY B 27 5 5 HELIX 13 AB4 THR B 30 ALA B 32 5 3 HELIX 14 AB5 ASP B 72 LYS B 87 1 16 HELIX 15 AB6 LEU B 119 LYS B 128 1 10 HELIX 16 AB7 PRO B 134 ARG B 155 1 22 HELIX 17 AB8 LYS B 163 ALA B 165 5 3 HELIX 18 AB9 SER B 204 ASN B 211 1 8 HELIX 19 AC1 ASN B 214 LEU B 232 1 19 HELIX 20 AC2 GLY B 238 MET B 241 5 4 HELIX 21 AC3 ASN B 242 GLN B 252 1 11 HELIX 22 AC4 SER B 264 ILE B 275 1 12 HELIX 23 AC5 ASP B 278 ARG B 282 5 5 HELIX 24 AC6 ASP B 284 THR B 299 1 16 SHEET 1 AA1 5 PHE A 34 ARG A 42 0 SHEET 2 AA1 5 SER A 46 CYS A 53 -1 O VAL A 48 N ILE A 40 SHEET 3 AA1 5 PRO A 59 VAL A 65 -1 O VAL A 60 N ALA A 51 SHEET 4 AA1 5 GLU A 106 GLU A 112 -1 O ILE A 109 N LYS A 63 SHEET 5 AA1 5 TYR A 97 GLU A 103 -1 N PHE A 101 O ASN A 108 SHEET 1 AA2 2 VAL A 167 ILE A 169 0 SHEET 2 AA2 2 VAL A 175 LEU A 177 -1 O LYS A 176 N PHE A 168 SHEET 1 AA3 5 PHE B 34 ARG B 42 0 SHEET 2 AA3 5 SER B 46 CYS B 53 -1 O ARG B 50 N GLU B 37 SHEET 3 AA3 5 PRO B 59 VAL B 65 -1 O LYS B 64 N GLU B 47 SHEET 4 AA3 5 GLU B 106 GLU B 112 -1 O LEU B 107 N VAL B 65 SHEET 5 AA3 5 TYR B 97 GLU B 103 -1 N PHE B 101 O ASN B 108 SHEET 1 AA4 3 ALA B 116 ASP B 118 0 SHEET 2 AA4 3 VAL B 167 THR B 170 -1 O ILE B 169 N GLY B 117 SHEET 3 AA4 3 VAL B 175 LEU B 177 -1 O LYS B 176 N PHE B 168 CRYST1 88.601 88.601 156.088 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011287 0.006516 0.000000 0.00000 SCALE2 0.000000 0.013033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006407 0.00000 MASTER 469 0 0 24 15 0 0 6 4514 2 0 48 END