HEADER IMMUNE SYSTEM 17-OCT-23 8WSM TITLE NLRP3 NACHT DOMAIN IN COMPLEX WITH COMPOUND 32 COMPND MOL_ID: 1; COMPND 2 MOLECULE: NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NLRP3; SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469 KEYWDS INFLAMMASOME, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.AKAI,T.ORITA,T.ADACHI REVDAT 2 03-JAN-24 8WSM 1 JRNL REVDAT 1 22-NOV-23 8WSM 0 JRNL AUTH Y.OHBA,K.ADACHI,T.FURUKAWA,T.NISHIMARU,K.SAKURAI,R.MASUO, JRNL AUTH 2 T.INAMI,T.ORITA,S.AKAI,T.ADACHI,K.USUI,Y.HAMADA,M.MORI, JRNL AUTH 3 T.KURIMOTO,T.WAKASHIMA,Y.AKIYAMA,S.MIYAZAKI,S.NOJI JRNL TITL DISCOVERY OF NOVEL NLRP3 INFLAMMASOME INHIBITORS COMPOSED OF JRNL TITL 2 AN OXAZOLE SCAFFOLD BEARING AN ACYLSULFAMIDE. JRNL REF ACS MED.CHEM.LETT. V. 14 1833 2023 JRNL REFN ISSN 1948-5875 JRNL PMID 38116417 JRNL DOI 10.1021/ACSMEDCHEMLETT.3C00433 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20_4459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 84.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 21126 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 84.0000 - 5.1700 1.00 3108 167 0.2093 0.2602 REMARK 3 2 5.1700 - 4.1000 1.00 2903 149 0.1766 0.1840 REMARK 3 3 4.1000 - 3.5800 1.00 2870 138 0.2040 0.2538 REMARK 3 4 3.5800 - 3.2600 1.00 2849 127 0.2237 0.2476 REMARK 3 5 3.2600 - 3.0200 1.00 2815 143 0.2524 0.2898 REMARK 3 6 3.0200 - 2.8500 1.00 2815 134 0.2853 0.3436 REMARK 3 7 2.8500 - 2.7000 0.99 2794 114 0.3056 0.3918 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.376 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.431 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.54 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4037 REMARK 3 ANGLE : 0.515 5436 REMARK 3 CHIRALITY : 0.036 590 REMARK 3 PLANARITY : 0.003 671 REMARK 3 DIHEDRAL : 11.511 1519 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 134 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3453 44.9500 150.1994 REMARK 3 T TENSOR REMARK 3 T11: 0.5894 T22: 0.8479 REMARK 3 T33: 0.7207 T12: -0.1704 REMARK 3 T13: -0.0754 T23: -0.2564 REMARK 3 L TENSOR REMARK 3 L11: 6.6520 L22: 3.7675 REMARK 3 L33: 9.3560 L12: -2.6364 REMARK 3 L13: -1.6837 L23: -2.9383 REMARK 3 S TENSOR REMARK 3 S11: -0.0336 S12: -0.6036 S13: 0.4491 REMARK 3 S21: 0.2063 S22: 0.1909 S23: -0.4580 REMARK 3 S31: -0.1320 S32: 0.9321 S33: -0.1576 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.5461 37.9529 142.0469 REMARK 3 T TENSOR REMARK 3 T11: 0.5104 T22: 0.4837 REMARK 3 T33: 0.6229 T12: -0.0669 REMARK 3 T13: 0.0662 T23: -0.0821 REMARK 3 L TENSOR REMARK 3 L11: 2.2655 L22: 1.2487 REMARK 3 L33: 3.7740 L12: -1.3916 REMARK 3 L13: -1.9598 L23: 1.7001 REMARK 3 S TENSOR REMARK 3 S11: -0.1253 S12: -0.1926 S13: -0.0523 REMARK 3 S21: 0.2533 S22: 0.0590 S23: 0.0422 REMARK 3 S31: 0.5091 S32: 0.1903 S33: 0.0278 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 676 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.6001 25.2095 124.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.6939 T22: 0.6176 REMARK 3 T33: 0.8708 T12: -0.0717 REMARK 3 T13: 0.1274 T23: -0.2241 REMARK 3 L TENSOR REMARK 3 L11: 2.5949 L22: 4.0139 REMARK 3 L33: 6.1430 L12: 0.4308 REMARK 3 L13: -0.5232 L23: -1.2594 REMARK 3 S TENSOR REMARK 3 S11: -0.1060 S12: 0.1613 S13: -0.5150 REMARK 3 S21: 0.1417 S22: -0.1495 S23: 0.2655 REMARK 3 S31: 0.9759 S32: -0.2496 S33: 0.2760 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WSM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041574. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21147 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 84.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.01600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.5, 1.2 M SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 88.68567 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 177.37133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 133.02850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 221.71417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.34283 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 88.68567 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 177.37133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 221.71417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 133.02850 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.34283 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 130 REMARK 465 LYS A 131 REMARK 465 MET A 132 REMARK 465 LYS A 133 REMARK 465 ASP A 153 REMARK 465 ARG A 154 REMARK 465 ASN A 155 REMARK 465 ALA A 156 REMARK 465 ARG A 157 REMARK 465 LEU A 158 REMARK 465 GLY A 159 REMARK 465 GLU A 160 REMARK 465 SER A 161 REMARK 465 HIS A 177 REMARK 465 ARG A 178 REMARK 465 SER A 179 REMARK 465 GLN A 180 REMARK 465 GLN A 181 REMARK 465 GLU A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 184 REMARK 465 GLN A 185 REMARK 465 GLU A 186 REMARK 465 LEU A 187 REMARK 465 LEU A 188 REMARK 465 ALA A 189 REMARK 465 ILE A 190 REMARK 465 GLY A 191 REMARK 465 LYS A 192 REMARK 465 THR A 193 REMARK 465 LYS A 194 REMARK 465 THR A 195 REMARK 465 CYS A 196 REMARK 465 GLU A 197 REMARK 465 SER A 198 REMARK 465 PRO A 199 REMARK 465 VAL A 200 REMARK 465 ASP A 213 REMARK 465 GLU A 214 REMARK 465 HIS A 215 REMARK 465 GLN A 452 REMARK 465 PRO A 453 REMARK 465 ARG A 454 REMARK 465 GLY A 455 REMARK 465 GLY A 456 REMARK 465 SER A 457 REMARK 465 GLN A 458 REMARK 465 GLU A 459 REMARK 465 HIS A 460 REMARK 465 GLY A 461 REMARK 465 LEU A 462 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 CYS A 514 REMARK 465 GLU A 515 REMARK 465 GLU A 539 REMARK 465 LYS A 540 REMARK 465 GLU A 541 REMARK 465 GLY A 542 REMARK 465 ARG A 543 REMARK 465 THR A 544 REMARK 465 ASN A 545 REMARK 465 VAL A 546 REMARK 465 PRO A 547 REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 ARG A 550 REMARK 465 LEU A 551 REMARK 465 LYS A 552 REMARK 465 LEU A 553 REMARK 465 ALA A 618 REMARK 465 LYS A 619 REMARK 465 LYS A 620 REMARK 465 LEU A 621 REMARK 465 GLN A 622 REMARK 465 GLU A 677 REMARK 465 SER A 678 REMARK 465 LEU A 679 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 211 -165.66 -76.89 REMARK 500 ASN A 284 73.35 -112.09 REMARK 500 PHE A 311 107.58 -175.68 REMARK 500 ALA A 433 116.35 -172.77 REMARK 500 GLN A 480 75.67 54.04 REMARK 500 TYR A 572 -26.40 76.71 REMARK 500 GLN A 638 -40.31 73.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 233 OG1 REMARK 620 2 ADP A 702 O1B 91.8 REMARK 620 3 HOH A 801 O 82.1 98.9 REMARK 620 4 HOH A 807 O 154.5 87.8 72.8 REMARK 620 5 HOH A 811 O 95.0 83.8 176.0 110.3 REMARK 620 6 HOH A 812 O 86.5 168.3 92.3 98.7 84.8 REMARK 620 N 1 2 3 4 5 DBREF 8WSM A 131 679 UNP Q96P20 NLRP3_HUMAN 131 679 SEQADV 8WSM GLY A 130 UNP Q96P20 EXPRESSION TAG SEQRES 1 A 550 GLY LYS MET LYS LYS ASP TYR ARG LYS LYS TYR ARG LYS SEQRES 2 A 550 TYR VAL ARG SER ARG PHE GLN CYS ILE GLU ASP ARG ASN SEQRES 3 A 550 ALA ARG LEU GLY GLU SER VAL SER LEU ASN LYS ARG TYR SEQRES 4 A 550 THR ARG LEU ARG LEU ILE LYS GLU HIS ARG SER GLN GLN SEQRES 5 A 550 GLU ARG GLU GLN GLU LEU LEU ALA ILE GLY LYS THR LYS SEQRES 6 A 550 THR CYS GLU SER PRO VAL SER PRO ILE LYS MET GLU LEU SEQRES 7 A 550 LEU PHE ASP PRO ASP ASP GLU HIS SER GLU PRO VAL HIS SEQRES 8 A 550 THR VAL VAL PHE GLN GLY ALA ALA GLY ILE GLY LYS THR SEQRES 9 A 550 ILE LEU ALA ARG LYS MET MET LEU ASP TRP ALA SER GLY SEQRES 10 A 550 THR LEU TYR GLN ASP ARG PHE ASP TYR LEU PHE TYR ILE SEQRES 11 A 550 HIS CYS ARG GLU VAL SER LEU VAL THR GLN ARG SER LEU SEQRES 12 A 550 GLY ASP LEU ILE MET SER CYS CYS PRO ASP PRO ASN PRO SEQRES 13 A 550 PRO ILE HIS LYS ILE VAL ARG LYS PRO SER ARG ILE LEU SEQRES 14 A 550 PHE LEU MET ASP GLY PHE ASP GLU LEU GLN GLY ALA PHE SEQRES 15 A 550 ASP GLU HIS ILE GLY PRO LEU CYS THR ASP TRP GLN LYS SEQRES 16 A 550 ALA GLU ARG GLY ASP ILE LEU LEU SER SER LEU ILE ARG SEQRES 17 A 550 LYS LYS LEU LEU PRO GLU ALA SER LEU LEU ILE THR THR SEQRES 18 A 550 ARG PRO VAL ALA LEU GLU LYS LEU GLN HIS LEU LEU ASP SEQRES 19 A 550 HIS PRO ARG HIS VAL GLU ILE LEU GLY PHE SER GLU ALA SEQRES 20 A 550 LYS ARG LYS GLU TYR PHE PHE LYS TYR PHE SER ASP GLU SEQRES 21 A 550 ALA GLN ALA ARG ALA ALA PHE SER LEU ILE GLN GLU ASN SEQRES 22 A 550 GLU VAL LEU PHE THR MET CYS PHE ILE PRO LEU VAL CYS SEQRES 23 A 550 TRP ILE VAL CYS THR GLY LEU LYS GLN GLN MET GLU SER SEQRES 24 A 550 GLY LYS SER LEU ALA GLN THR SER LYS THR THR THR ALA SEQRES 25 A 550 VAL TYR VAL PHE PHE LEU SER SER LEU LEU GLN PRO ARG SEQRES 26 A 550 GLY GLY SER GLN GLU HIS GLY LEU CYS ALA HIS LEU TRP SEQRES 27 A 550 GLY LEU CYS SER LEU ALA ALA ASP GLY ILE TRP ASN GLN SEQRES 28 A 550 LYS ILE LEU PHE GLU GLU SER ASP LEU ARG ASN HIS GLY SEQRES 29 A 550 LEU GLN LYS ALA ASP VAL SER ALA PHE LEU ARG MET ASN SEQRES 30 A 550 LEU PHE GLN LYS GLU VAL ASP CYS GLU LYS PHE TYR SER SEQRES 31 A 550 PHE ILE HIS MET THR PHE GLN GLU PHE PHE ALA ALA MET SEQRES 32 A 550 TYR TYR LEU LEU GLU GLU GLU LYS GLU GLY ARG THR ASN SEQRES 33 A 550 VAL PRO GLY SER ARG LEU LYS LEU PRO SER ARG ASP VAL SEQRES 34 A 550 THR VAL LEU LEU GLU ASN TYR GLY LYS PHE GLU LYS GLY SEQRES 35 A 550 TYR LEU ILE PHE VAL VAL ARG PHE LEU PHE GLY LEU VAL SEQRES 36 A 550 ASN GLN GLU ARG THR SER TYR LEU GLU LYS LYS LEU SER SEQRES 37 A 550 CYS LYS ILE SER GLN GLN ILE ARG LEU GLU LEU LEU LYS SEQRES 38 A 550 TRP ILE GLU VAL LYS ALA LYS ALA LYS LYS LEU GLN ILE SEQRES 39 A 550 GLN PRO SER GLN LEU GLU LEU PHE TYR CYS LEU TYR GLU SEQRES 40 A 550 MET GLN GLU GLU ASP PHE VAL GLN ARG ALA MET ASP TYR SEQRES 41 A 550 PHE PRO LYS ILE GLU ILE ASN LEU SER THR ARG MET ASP SEQRES 42 A 550 HIS MET VAL SER SER PHE CYS ILE GLU ASN CYS HIS ARG SEQRES 43 A 550 VAL GLU SER LEU HET MG A 701 1 HET ADP A 702 27 HET XE3 A 703 30 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM XE3 2-[[2-METHYL-5-(TRIFLUOROMETHYL)PHENYL]AMINO]-~{N}-(1, HETNAM 2 XE3 4-OXAZEPAN-4-YLSULFONYL)-1,3-OXAZOLE-4-CARBOXAMIDE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 XE3 C17 H19 F3 N4 O5 S FORMUL 5 HOH *17(H2 O) HELIX 1 AA1 LYS A 134 PHE A 148 1 15 HELIX 2 AA2 SER A 163 TYR A 168 1 6 HELIX 3 AA3 MET A 205 ASP A 210 5 6 HELIX 4 AA4 GLY A 231 SER A 245 1 15 HELIX 5 AA5 ARG A 262 VAL A 264 5 3 HELIX 6 AA6 SER A 271 CYS A 279 1 9 HELIX 7 AA7 PRO A 286 VAL A 291 1 6 HELIX 8 AA8 ARG A 292 SER A 295 5 4 HELIX 9 AA9 GLY A 303 LEU A 307 5 5 HELIX 10 AB1 GLY A 328 ARG A 337 1 10 HELIX 11 AB2 ARG A 351 VAL A 353 5 3 HELIX 12 AB3 ALA A 354 GLN A 359 1 6 HELIX 13 AB4 SER A 374 PHE A 386 1 13 HELIX 14 AB5 ASP A 388 ASN A 402 1 15 HELIX 15 AB6 ASN A 402 CYS A 409 1 8 HELIX 16 AB7 ILE A 411 GLY A 429 1 19 HELIX 17 AB8 THR A 438 LEU A 451 1 14 HELIX 18 AB9 HIS A 465 ASN A 479 1 15 HELIX 19 AC1 GLU A 485 HIS A 492 1 8 HELIX 20 AC2 GLN A 495 MET A 505 1 11 HELIX 21 AC3 HIS A 522 TYR A 534 1 13 HELIX 22 AC4 ASP A 557 ASN A 564 1 8 HELIX 23 AC5 LYS A 567 GLY A 571 5 5 HELIX 24 AC6 LEU A 573 VAL A 584 1 12 HELIX 25 AC7 LEU A 592 LEU A 596 5 5 HELIX 26 AC8 SER A 597 LYS A 617 1 21 HELIX 27 AC9 SER A 626 GLN A 638 1 13 HELIX 28 AD1 GLU A 639 ASP A 648 1 10 HELIX 29 AD2 THR A 659 GLU A 671 1 13 SHEET 1 AA1 6 ARG A 172 LYS A 175 0 SHEET 2 AA1 6 ARG A 366 GLY A 372 -1 O LEU A 371 N ARG A 172 SHEET 3 AA1 6 THR A 221 GLN A 225 1 N VAL A 223 O VAL A 368 SHEET 4 AA1 6 SER A 345 THR A 350 1 O ILE A 348 N PHE A 224 SHEET 5 AA1 6 ILE A 297 ASP A 302 1 N PHE A 299 O LEU A 347 SHEET 6 AA1 6 TYR A 255 HIS A 260 1 N ILE A 259 O LEU A 300 SHEET 1 AA2 2 GLN A 269 ARG A 270 0 SHEET 2 AA2 2 GLU A 326 ARG A 327 -1 O GLU A 326 N ARG A 270 SHEET 1 AA3 2 PHE A 508 LYS A 510 0 SHEET 2 AA3 2 TYR A 518 PHE A 520 -1 O SER A 519 N GLN A 509 LINK OG1 THR A 233 MG MG A 701 1555 1555 2.12 LINK MG MG A 701 O1B ADP A 702 1555 1555 2.09 LINK MG MG A 701 O HOH A 801 1555 1555 2.08 LINK MG MG A 701 O HOH A 807 1555 1555 2.07 LINK MG MG A 701 O HOH A 811 1555 1555 2.08 LINK MG MG A 701 O HOH A 812 1555 1555 2.08 CISPEP 1 GLY A 316 PRO A 317 0 -0.38 CISPEP 2 GLN A 624 PRO A 625 0 -2.17 CRYST1 96.997 96.997 266.057 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010310 0.005952 0.000000 0.00000 SCALE2 0.000000 0.011904 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003759 0.00000