HEADER TRANSFERASE 18-OCT-23 8WTC TITLE CRYSTAL STRUCTURE OF MCSB KINASE DOMAIN COMPLEXED WITH MCSA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-ARGININE KINASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: MCSB KINASE DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN-ARGININE KINASE ACTIVATOR PROTEIN; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 3 ORGANISM_TAXID: 224308; SOURCE 4 GENE: MCSB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168; SOURCE 9 ORGANISM_TAXID: 224308; SOURCE 10 GENE: MCSA; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PROTEIN-ARGININE KINASE, ZINC-COORDINATION MOTIFS, KINASE ACTIVATOR, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ARIFUZZAMAN,E.KWON,D.Y.KIM REVDAT 1 08-MAY-24 8WTC 0 JRNL AUTH M.ARIFUZZAMAN,E.KWON,D.Y.KIM JRNL TITL STRUCTURAL INSIGHTS INTO THE REGULATION OF PROTEIN-ARGININE JRNL TITL 2 KINASE MCSB BY MCSA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 12121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38625935 JRNL DOI 10.1073/PNAS.2320312121 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19RC5_4047: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.45 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 25631 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.690 REMARK 3 FREE R VALUE TEST SET COUNT : 1970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.4500 - 6.7400 0.87 1595 132 0.1708 0.1991 REMARK 3 2 6.7400 - 5.3500 0.92 1649 137 0.2147 0.2527 REMARK 3 3 5.3500 - 4.6800 0.98 1752 146 0.1821 0.2331 REMARK 3 4 4.6800 - 4.2500 0.92 1629 135 0.1756 0.2336 REMARK 3 5 4.2500 - 3.9500 0.97 1724 144 0.1995 0.2391 REMARK 3 6 3.9500 - 3.7100 0.99 1747 145 0.2224 0.2738 REMARK 3 7 3.7100 - 3.5300 0.99 1735 145 0.2343 0.2672 REMARK 3 8 3.5300 - 3.3700 0.90 1587 132 0.2389 0.2717 REMARK 3 9 3.3700 - 3.2400 0.96 1681 140 0.2617 0.3682 REMARK 3 10 3.2400 - 3.1300 0.98 1742 145 0.2728 0.3608 REMARK 3 11 3.1300 - 3.0300 0.97 1692 142 0.2925 0.3359 REMARK 3 12 3.0300 - 2.9500 0.98 1725 143 0.2838 0.3318 REMARK 3 13 2.9500 - 2.8700 0.99 1741 145 0.2877 0.3703 REMARK 3 14 2.8700 - 2.8000 0.95 1662 139 0.3070 0.3460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5345 REMARK 3 ANGLE : 1.224 7195 REMARK 3 CHIRALITY : 0.065 803 REMARK 3 PLANARITY : 0.012 953 REMARK 3 DIHEDRAL : 6.386 709 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 11C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26019 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.10100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATE SHAPE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% V/V 1,4-DIOXANE, 10% W/V PEG20000, REMARK 280 3% W/V 1,6-HEXANEDIOL, 0.1 M BICINE PH 9.0, MICROBATCH, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 94.05200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.10400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 94.05200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.10400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 ILE A 209 REMARK 465 TYR A 210 REMARK 465 GLY A 211 REMARK 465 GLU A 212 REMARK 465 GLY A 213 REMARK 465 SER A 214 REMARK 465 GLU A 215 REMARK 465 ALA A 216 REMARK 465 VAL A 217 REMARK 465 ILE A 258 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 CYS B 3 REMARK 465 GLN B 4 REMARK 465 GLU B 5 REMARK 465 CYS B 6 REMARK 465 HIS B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 PRO B 10 REMARK 465 ALA B 11 REMARK 465 THR B 12 REMARK 465 PHE B 13 REMARK 465 HIS B 14 REMARK 465 PHE B 15 REMARK 465 THR B 16 REMARK 465 LYS B 17 REMARK 465 VAL B 18 REMARK 465 VAL B 19 REMARK 465 ASN B 20 REMARK 465 GLY B 21 REMARK 465 GLU B 22 REMARK 465 LYS B 23 REMARK 465 ILE B 24 REMARK 465 GLU B 25 REMARK 465 VAL B 26 REMARK 465 HIS B 27 REMARK 465 ILE B 28 REMARK 465 CYS B 29 REMARK 465 GLU B 30 REMARK 465 GLN B 31 REMARK 465 CYS B 32 REMARK 465 ALA B 33 REMARK 465 LYS B 34 REMARK 465 GLU B 35 REMARK 465 ASN B 36 REMARK 465 SER B 37 REMARK 465 ASP B 38 REMARK 465 SER B 39 REMARK 465 TYR B 40 REMARK 465 GLY B 41 REMARK 465 ILE B 42 REMARK 465 SER B 43 REMARK 465 ALA B 44 REMARK 465 ASN B 45 REMARK 465 GLN B 46 REMARK 465 GLY B 47 REMARK 465 PHE B 48 REMARK 465 SER B 49 REMARK 465 ILE B 50 REMARK 465 HIS B 51 REMARK 465 ASN B 52 REMARK 465 LEU B 53 REMARK 465 LEU B 54 REMARK 465 SER B 55 REMARK 465 GLY B 56 REMARK 465 LEU B 57 REMARK 465 LEU B 58 REMARK 465 ASN B 59 REMARK 465 MET B 60 REMARK 465 ASP B 61 REMARK 465 SER B 62 REMARK 465 SER B 63 REMARK 465 PHE B 64 REMARK 465 GLN B 65 REMARK 465 ASN B 66 REMARK 465 ALA B 67 REMARK 465 GLY B 68 REMARK 465 THR B 69 REMARK 465 GLN B 70 REMARK 465 MET B 71 REMARK 465 PHE B 72 REMARK 465 SER B 73 REMARK 465 HIS B 74 REMARK 465 SER B 75 REMARK 465 GLU B 76 REMARK 465 SER B 177 REMARK 465 THR B 178 REMARK 465 ASP B 179 REMARK 465 SER B 180 REMARK 465 GLU B 181 REMARK 465 GLU B 182 REMARK 465 GLU B 183 REMARK 465 GLN B 184 REMARK 465 GLU B 185 REMARK 465 GLY C 16 REMARK 465 SER C 17 REMARK 465 ILE C 209 REMARK 465 TYR C 210 REMARK 465 GLY C 211 REMARK 465 GLU C 212 REMARK 465 GLY C 213 REMARK 465 SER C 214 REMARK 465 GLU C 215 REMARK 465 ALA C 216 REMARK 465 VAL C 217 REMARK 465 ILE C 258 REMARK 465 GLY D -1 REMARK 465 SER D 0 REMARK 465 MET D 1 REMARK 465 ILE D 2 REMARK 465 CYS D 3 REMARK 465 GLN D 4 REMARK 465 GLU D 5 REMARK 465 CYS D 6 REMARK 465 HIS D 7 REMARK 465 GLU D 8 REMARK 465 ARG D 9 REMARK 465 PRO D 10 REMARK 465 ALA D 11 REMARK 465 THR D 12 REMARK 465 PHE D 13 REMARK 465 HIS D 14 REMARK 465 PHE D 15 REMARK 465 THR D 16 REMARK 465 LYS D 17 REMARK 465 VAL D 18 REMARK 465 VAL D 19 REMARK 465 ASN D 20 REMARK 465 GLY D 21 REMARK 465 GLU D 22 REMARK 465 LYS D 23 REMARK 465 ILE D 24 REMARK 465 GLU D 25 REMARK 465 VAL D 26 REMARK 465 HIS D 27 REMARK 465 ILE D 28 REMARK 465 CYS D 29 REMARK 465 GLU D 30 REMARK 465 GLN D 31 REMARK 465 CYS D 32 REMARK 465 ALA D 33 REMARK 465 LYS D 34 REMARK 465 GLU D 35 REMARK 465 ASN D 36 REMARK 465 SER D 37 REMARK 465 ASP D 38 REMARK 465 SER D 39 REMARK 465 TYR D 40 REMARK 465 GLY D 41 REMARK 465 ILE D 42 REMARK 465 SER D 43 REMARK 465 ALA D 44 REMARK 465 ASN D 45 REMARK 465 GLN D 46 REMARK 465 GLY D 47 REMARK 465 PHE D 48 REMARK 465 SER D 49 REMARK 465 ILE D 50 REMARK 465 HIS D 51 REMARK 465 ASN D 52 REMARK 465 LEU D 53 REMARK 465 LEU D 54 REMARK 465 SER D 55 REMARK 465 GLY D 56 REMARK 465 LEU D 57 REMARK 465 LEU D 58 REMARK 465 ASN D 59 REMARK 465 MET D 60 REMARK 465 ASP D 61 REMARK 465 SER D 62 REMARK 465 SER D 63 REMARK 465 PHE D 64 REMARK 465 GLN D 65 REMARK 465 ASN D 66 REMARK 465 ALA D 67 REMARK 465 GLY D 68 REMARK 465 THR D 69 REMARK 465 GLN D 70 REMARK 465 MET D 71 REMARK 465 PHE D 72 REMARK 465 SER D 73 REMARK 465 HIS D 74 REMARK 465 SER D 75 REMARK 465 GLU D 76 REMARK 465 LYS D 176 REMARK 465 SER D 177 REMARK 465 THR D 178 REMARK 465 ASP D 179 REMARK 465 SER D 180 REMARK 465 GLU D 181 REMARK 465 GLU D 182 REMARK 465 GLU D 183 REMARK 465 GLN D 184 REMARK 465 GLU D 185 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 22 OG REMARK 470 SER C 22 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS D 84 SG CYS D 102 1.17 REMARK 500 SG CYS B 84 SG CYS B 102 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS D 102 CB CYS D 102 SG 0.150 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 120 -127.15 -109.15 REMARK 500 THR B 122 -0.11 -142.90 REMARK 500 ALA B 125 48.71 -98.18 REMARK 500 GLN B 155 -179.58 -64.58 REMARK 500 GLU C 112 -153.11 64.42 REMARK 500 GLU C 113 -41.07 73.70 REMARK 500 ASN C 119 35.83 74.85 REMARK 500 GLU C 120 -127.02 -99.33 REMARK 500 ARG C 190 18.02 55.56 REMARK 500 ARG C 207 88.46 -163.40 REMARK 500 HIS D 118 50.30 -108.56 REMARK 500 GLU D 157 70.28 -103.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ZN B 201 REMARK 615 ZN D 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 81 SG REMARK 620 2 CYS B 84 SG 63.0 REMARK 620 3 CYS B 99 SG 90.1 59.2 REMARK 620 4 CYS B 102 N 119.7 147.6 145.6 REMARK 620 5 CYS B 102 SG 93.5 55.7 103.2 92.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 81 SG REMARK 620 2 CYS D 84 N 108.4 REMARK 620 3 CYS D 84 SG 86.2 92.5 REMARK 620 4 CYS D 99 SG 110.7 140.0 82.1 REMARK 620 5 CYS D 102 SG 63.8 116.6 29.4 74.9 REMARK 620 N 1 2 3 4 DBREF 8WTC A 18 258 UNP P37570 MCSB_BACSU 18 258 DBREF 8WTC B 1 185 UNP P37569 MCSA_BACSU 1 185 DBREF 8WTC C 18 258 UNP P37570 MCSB_BACSU 18 258 DBREF 8WTC D 1 185 UNP P37569 MCSA_BACSU 1 185 SEQADV 8WTC GLY A 16 UNP P37570 EXPRESSION TAG SEQADV 8WTC SER A 17 UNP P37570 EXPRESSION TAG SEQADV 8WTC GLY B -1 UNP P37569 EXPRESSION TAG SEQADV 8WTC SER B 0 UNP P37569 EXPRESSION TAG SEQADV 8WTC GLY C 16 UNP P37570 EXPRESSION TAG SEQADV 8WTC SER C 17 UNP P37570 EXPRESSION TAG SEQADV 8WTC GLY D -1 UNP P37569 EXPRESSION TAG SEQADV 8WTC SER D 0 UNP P37569 EXPRESSION TAG SEQRES 1 A 243 GLY SER LYS GLY PRO GLU SER ASP ILE VAL LEU SER SER SEQRES 2 A 243 ARG ILE ARG LEU ALA ARG ASN PHE GLU HIS ILE ARG PHE SEQRES 3 A 243 PRO THR ARG TYR SER ASN GLU GLU ALA SER SER ILE ILE SEQRES 4 A 243 GLN GLN PHE GLU ASP GLN PHE SER GLU GLN GLU ILE PRO SEQRES 5 A 243 GLY ILE GLY LYS PHE VAL LEU ILE ARG MET ASN ASP ALA SEQRES 6 A 243 GLN PRO LEU GLU LYS ARG VAL LEU VAL GLU LYS HIS LEU SEQRES 7 A 243 ILE SER PRO ASN LEU THR GLU SER PRO PHE GLY GLY CYS SEQRES 8 A 243 LEU LEU SER GLU ASN GLU GLU VAL SER VAL MET LEU ASN SEQRES 9 A 243 GLU GLU ASP HIS ILE ARG ILE GLN CYS LEU PHE PRO GLY SEQRES 10 A 243 PHE GLN LEU LEU GLU ALA MET LYS ALA ALA ASN GLN VAL SEQRES 11 A 243 ASP ASP TRP ILE GLU GLU LYS VAL ASP TYR ALA PHE ASN SEQRES 12 A 243 GLU GLN ARG GLY TYR LEU THR SER CYS PRO THR ASN VAL SEQRES 13 A 243 GLY THR GLY LEU ARG ALA SER VAL MET MET HIS LEU PRO SEQRES 14 A 243 ALA LEU VAL LEU THR ARG GLN ILE ASN ARG ILE ILE PRO SEQRES 15 A 243 ALA ILE ASN GLN LEU GLY LEU VAL VAL ARG GLY ILE TYR SEQRES 16 A 243 GLY GLU GLY SER GLU ALA VAL GLY ASN ILE PHE GLN ILE SEQRES 17 A 243 SER ASN GLN ILE THR LEU GLY LYS SER GLU GLN ASP ILE SEQRES 18 A 243 VAL GLU ASP LEU ASN SER VAL ALA ALA GLN LEU ILE GLU SEQRES 19 A 243 GLN GLU ARG SER ALA ARG GLU ALA ILE SEQRES 1 B 187 GLY SER MET ILE CYS GLN GLU CYS HIS GLU ARG PRO ALA SEQRES 2 B 187 THR PHE HIS PHE THR LYS VAL VAL ASN GLY GLU LYS ILE SEQRES 3 B 187 GLU VAL HIS ILE CYS GLU GLN CYS ALA LYS GLU ASN SER SEQRES 4 B 187 ASP SER TYR GLY ILE SER ALA ASN GLN GLY PHE SER ILE SEQRES 5 B 187 HIS ASN LEU LEU SER GLY LEU LEU ASN MET ASP SER SER SEQRES 6 B 187 PHE GLN ASN ALA GLY THR GLN MET PHE SER HIS SER GLU SEQRES 7 B 187 GLN ILE SER ALA CYS PRO LYS CYS GLY MET THR PHE GLN SEQRES 8 B 187 GLN PHE ARG LYS ILE GLY ARG PHE GLY CYS SER GLU CYS SEQRES 9 B 187 TYR LYS THR PHE HIS SER ASN ILE THR PRO ILE LEU ARG SEQRES 10 B 187 LYS VAL HIS SER GLY ASN THR VAL HIS ALA GLY LYS ILE SEQRES 11 B 187 PRO LYS ARG ILE GLY GLY ASN LEU HIS VAL ARG ARG GLN SEQRES 12 B 187 ILE ASP MET LEU LYS LYS GLU LEU GLU SER LEU ILE HIS SEQRES 13 B 187 GLN GLU GLU PHE GLU ASN ALA ALA HIS VAL ARG ASP GLN SEQRES 14 B 187 ILE ARG LEU LEU GLU GLN SER LEU LYS SER THR ASP SER SEQRES 15 B 187 GLU GLU GLU GLN GLU SEQRES 1 C 243 GLY SER LYS GLY PRO GLU SER ASP ILE VAL LEU SER SER SEQRES 2 C 243 ARG ILE ARG LEU ALA ARG ASN PHE GLU HIS ILE ARG PHE SEQRES 3 C 243 PRO THR ARG TYR SER ASN GLU GLU ALA SER SER ILE ILE SEQRES 4 C 243 GLN GLN PHE GLU ASP GLN PHE SER GLU GLN GLU ILE PRO SEQRES 5 C 243 GLY ILE GLY LYS PHE VAL LEU ILE ARG MET ASN ASP ALA SEQRES 6 C 243 GLN PRO LEU GLU LYS ARG VAL LEU VAL GLU LYS HIS LEU SEQRES 7 C 243 ILE SER PRO ASN LEU THR GLU SER PRO PHE GLY GLY CYS SEQRES 8 C 243 LEU LEU SER GLU ASN GLU GLU VAL SER VAL MET LEU ASN SEQRES 9 C 243 GLU GLU ASP HIS ILE ARG ILE GLN CYS LEU PHE PRO GLY SEQRES 10 C 243 PHE GLN LEU LEU GLU ALA MET LYS ALA ALA ASN GLN VAL SEQRES 11 C 243 ASP ASP TRP ILE GLU GLU LYS VAL ASP TYR ALA PHE ASN SEQRES 12 C 243 GLU GLN ARG GLY TYR LEU THR SER CYS PRO THR ASN VAL SEQRES 13 C 243 GLY THR GLY LEU ARG ALA SER VAL MET MET HIS LEU PRO SEQRES 14 C 243 ALA LEU VAL LEU THR ARG GLN ILE ASN ARG ILE ILE PRO SEQRES 15 C 243 ALA ILE ASN GLN LEU GLY LEU VAL VAL ARG GLY ILE TYR SEQRES 16 C 243 GLY GLU GLY SER GLU ALA VAL GLY ASN ILE PHE GLN ILE SEQRES 17 C 243 SER ASN GLN ILE THR LEU GLY LYS SER GLU GLN ASP ILE SEQRES 18 C 243 VAL GLU ASP LEU ASN SER VAL ALA ALA GLN LEU ILE GLU SEQRES 19 C 243 GLN GLU ARG SER ALA ARG GLU ALA ILE SEQRES 1 D 187 GLY SER MET ILE CYS GLN GLU CYS HIS GLU ARG PRO ALA SEQRES 2 D 187 THR PHE HIS PHE THR LYS VAL VAL ASN GLY GLU LYS ILE SEQRES 3 D 187 GLU VAL HIS ILE CYS GLU GLN CYS ALA LYS GLU ASN SER SEQRES 4 D 187 ASP SER TYR GLY ILE SER ALA ASN GLN GLY PHE SER ILE SEQRES 5 D 187 HIS ASN LEU LEU SER GLY LEU LEU ASN MET ASP SER SER SEQRES 6 D 187 PHE GLN ASN ALA GLY THR GLN MET PHE SER HIS SER GLU SEQRES 7 D 187 GLN ILE SER ALA CYS PRO LYS CYS GLY MET THR PHE GLN SEQRES 8 D 187 GLN PHE ARG LYS ILE GLY ARG PHE GLY CYS SER GLU CYS SEQRES 9 D 187 TYR LYS THR PHE HIS SER ASN ILE THR PRO ILE LEU ARG SEQRES 10 D 187 LYS VAL HIS SER GLY ASN THR VAL HIS ALA GLY LYS ILE SEQRES 11 D 187 PRO LYS ARG ILE GLY GLY ASN LEU HIS VAL ARG ARG GLN SEQRES 12 D 187 ILE ASP MET LEU LYS LYS GLU LEU GLU SER LEU ILE HIS SEQRES 13 D 187 GLN GLU GLU PHE GLU ASN ALA ALA HIS VAL ARG ASP GLN SEQRES 14 D 187 ILE ARG LEU LEU GLU GLN SER LEU LYS SER THR ASP SER SEQRES 15 D 187 GLU GLU GLU GLN GLU HET ZN B 201 1 HET ZN D 201 1 HETNAM ZN ZINC ION FORMUL 5 ZN 2(ZN 2+) HELIX 1 AA1 SER A 46 SER A 62 1 17 HELIX 2 AA2 ASN A 78 ALA A 80 5 3 HELIX 3 AA3 GLN A 81 LYS A 91 1 11 HELIX 4 AA4 SER A 95 SER A 101 1 7 HELIX 5 AA5 GLN A 134 VAL A 153 1 20 HELIX 6 AA6 LEU A 183 THR A 189 1 7 HELIX 7 AA7 GLN A 191 LEU A 202 1 12 HELIX 8 AA8 SER A 232 ALA A 257 1 26 HELIX 9 AA9 THR B 87 GLY B 95 1 9 HELIX 10 AB1 CYS B 99 PHE B 106 1 8 HELIX 11 AB2 PHE B 106 HIS B 118 1 13 HELIX 12 AB3 PRO B 129 GLN B 155 1 27 HELIX 13 AB4 GLU B 157 LYS B 176 1 20 HELIX 14 AB5 SER C 46 SER C 62 1 17 HELIX 15 AB6 GLN C 81 LYS C 91 1 11 HELIX 16 AB7 SER C 95 SER C 101 5 7 HELIX 17 AB8 GLN C 134 VAL C 153 1 20 HELIX 18 AB9 CYS C 167 VAL C 171 5 5 HELIX 19 AC1 LEU C 183 THR C 189 1 7 HELIX 20 AC2 GLN C 191 LEU C 202 1 12 HELIX 21 AC3 SER C 232 ALA C 257 1 26 HELIX 22 AC4 THR D 87 GLY D 95 1 9 HELIX 23 AC5 GLU D 101 PHE D 106 1 6 HELIX 24 AC6 PHE D 106 HIS D 118 1 13 HELIX 25 AC7 PRO D 129 GLN D 155 1 27 HELIX 26 AC8 GLU D 157 LEU D 175 1 19 SHEET 1 AA1 9 GLU A 65 ILE A 66 0 SHEET 2 AA1 9 GLY A 70 ARG A 76 -1 O GLY A 70 N ILE A 66 SHEET 3 AA1 9 GLY A 105 SER A 109 -1 O LEU A 108 N VAL A 73 SHEET 4 AA1 9 VAL A 114 LEU A 118 -1 O VAL A 116 N LEU A 107 SHEET 5 AA1 9 ILE A 124 PHE A 130 -1 O GLN A 127 N SER A 115 SHEET 6 AA1 9 VAL A 25 ARG A 34 -1 N ARG A 34 O ILE A 124 SHEET 7 AA1 9 LEU A 175 HIS A 182 -1 O SER A 178 N ARG A 29 SHEET 8 AA1 9 ILE A 220 ASN A 225 -1 O PHE A 221 N MET A 181 SHEET 9 AA1 9 LEU A 204 ARG A 207 -1 N VAL A 205 O SER A 224 SHEET 1 AA2 2 PHE A 157 ASN A 158 0 SHEET 2 AA2 2 GLY A 162 TYR A 163 -1 O GLY A 162 N ASN A 158 SHEET 1 AA3 9 GLU C 65 ILE C 66 0 SHEET 2 AA3 9 GLY C 70 ARG C 76 -1 O GLY C 70 N ILE C 66 SHEET 3 AA3 9 GLY C 105 SER C 109 -1 O LEU C 108 N VAL C 73 SHEET 4 AA3 9 VAL C 114 LEU C 118 -1 O LEU C 118 N GLY C 105 SHEET 5 AA3 9 ILE C 124 PHE C 130 -1 O GLN C 127 N SER C 115 SHEET 6 AA3 9 VAL C 25 ARG C 34 -1 N LEU C 32 O ILE C 126 SHEET 7 AA3 9 LEU C 175 HIS C 182 -1 O SER C 178 N ARG C 29 SHEET 8 AA3 9 ILE C 220 ASN C 225 -1 O PHE C 221 N MET C 181 SHEET 9 AA3 9 LEU C 204 VAL C 206 -1 N VAL C 205 O SER C 224 SHEET 1 AA4 2 PHE C 157 ASN C 158 0 SHEET 2 AA4 2 GLY C 162 TYR C 163 -1 O GLY C 162 N ASN C 158 LINK SG CYS B 81 ZN ZN B 201 1555 1555 2.30 LINK SG CYS B 84 ZN ZN B 201 1555 1555 2.26 LINK SG CYS B 99 ZN ZN B 201 1555 1555 2.31 LINK N CYS B 102 ZN ZN B 201 1555 1555 1.87 LINK SG CYS B 102 ZN ZN B 201 1555 1555 2.31 LINK SG CYS D 81 ZN ZN D 201 1555 1555 2.24 LINK N CYS D 84 ZN ZN D 201 1555 1555 1.84 LINK SG CYS D 84 ZN ZN D 201 1555 1555 2.22 LINK SG CYS D 99 ZN ZN D 201 1555 1555 2.24 LINK SG CYS D 102 ZN ZN D 201 1555 1555 2.35 CRYST1 188.104 74.208 79.935 90.00 100.84 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005316 0.000000 0.001018 0.00000 SCALE2 0.000000 0.013476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012737 0.00000