HEADER HYDROLASE 27-OCT-23 8WX7 TITLE CRYSTAL STRUCTURE OF SHP2 IN COMPLEX WITH JAB-3186 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 11; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-TYROSINE PHOSPHATASE 1D,PTP-1D,PROTEIN-TYROSINE COMPND 5 PHOSPHATASE 2C,PTP-2C,SH-PTP2,SHP-2,SHP2,SH-PTP3; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPN11, PTP2C, SHPTP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATASE CANCER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.MA,P.GAO,D.KANG,H.HAN,X.SUN,W.ZHANG,D.QIAN,Y.WANG,W.LONG REVDAT 2 04-SEP-24 8WX7 1 JRNL REVDAT 1 14-AUG-24 8WX7 0 JRNL AUTH C.MA,D.KANG,P.GAO,W.ZHANG,X.WU,Z.XU,H.HAN,L.ZHANG,Y.CAI, JRNL AUTH 2 Y.WANG,Y.WANG,W.LONG JRNL TITL DISCOVERY OF JAB-3312, A POTENT SHP2 ALLOSTERIC INHIBITOR JRNL TITL 2 FOR CANCER TREATMENT. JRNL REF J.MED.CHEM. V. 67 13534 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 39110625 JRNL DOI 10.1021/ACS.JMEDCHEM.4C00360 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 64516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3417 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4684 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 252 REMARK 3 BIN FREE R VALUE : 0.3400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7868 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.010 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8184 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7326 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11091 ; 1.474 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16954 ; 1.271 ; 1.586 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 991 ; 7.125 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 447 ;31.237 ;22.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1365 ;14.523 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;18.739 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1043 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9114 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1741 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3982 ; 3.267 ; 4.404 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3981 ; 3.265 ; 4.403 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4958 ; 4.580 ; 6.584 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4959 ; 4.581 ; 6.585 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4202 ; 3.614 ; 4.662 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4143 ; 3.535 ; 4.615 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6041 ; 5.257 ; 6.803 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8852 ; 7.200 ;49.460 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8818 ; 7.173 ;49.400 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8WX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 02-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042177. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97893 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68653 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M AMMONIUM REMARK 280 SULPHATE, 28 % W/V PEG3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 105.56050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 86 REMARK 465 LYS A 89 REMARK 465 GLU A 90 REMARK 465 LYS A 91 REMARK 465 ASN A 92 REMARK 465 GLY A 93 REMARK 465 ASP A 94 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 LYS A 157 REMARK 465 GLY A 158 REMARK 465 GLU A 159 REMARK 465 LEU A 236 REMARK 465 ALA A 237 REMARK 465 GLU A 238 REMARK 465 THR A 239 REMARK 465 THR A 240 REMARK 465 ASP A 241 REMARK 465 LYS A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 GLY A 295 REMARK 465 ASP A 296 REMARK 465 PRO A 297 REMARK 465 ASN A 298 REMARK 465 GLU A 299 REMARK 465 PRO A 300 REMARK 465 VAL A 301 REMARK 465 GLU A 313 REMARK 465 PHE A 314 REMARK 465 GLU A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 CYS A 318 REMARK 465 ASN A 319 REMARK 465 ASN A 320 REMARK 465 SER A 321 REMARK 465 LYS A 322 REMARK 465 PRO A 323 REMARK 465 GLY B 0 REMARK 465 MET B 1 REMARK 465 GLY B 86 REMARK 465 LYS B 157 REMARK 465 GLY B 158 REMARK 465 GLU B 159 REMARK 465 SER B 160 REMARK 465 ASP B 241 REMARK 465 LYS B 242 REMARK 465 GLU B 315 REMARK 465 THR B 316 REMARK 465 LYS B 317 REMARK 465 CYS B 318 REMARK 465 ASN B 319 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 37 CG OD1 ND2 REMARK 470 ARG A 47 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 55 CG CD CE NZ REMARK 470 HIS A 84 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 87 CG CD OE1 NE2 REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLN A 141 CG CD OE1 NE2 REMARK 470 ASN A 161 CG OD1 ND2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 LEU A 177 CG CD1 CD2 REMARK 470 THR A 205 OG1 CG2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 LYS A 274 CG CD CE NZ REMARK 470 ASP A 294 CG OD1 OD2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 ARG A 421 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 426 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 482 CG CD CE NZ REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 48 CG OD1 ND2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 HIS B 116 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 470 GLU B 123 CG CD OE1 OE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 GLN B 141 CG CD OE1 NE2 REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 ASN B 161 CG OD1 ND2 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 LEU B 177 CG CD1 CD2 REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 470 LYS B 199 CG CD CE NZ REMARK 470 GLU B 225 CG CD OE1 OE2 REMARK 470 LEU B 236 CG CD1 CD2 REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 THR B 239 OG1 CG2 REMARK 470 THR B 240 OG1 CG2 REMARK 470 ASN B 298 CG OD1 ND2 REMARK 470 GLU B 299 CG CD OE1 OE2 REMARK 470 GLN B 335 CG CD OE1 NE2 REMARK 470 LYS B 402 CG CD CE NZ REMARK 470 ARG B 421 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 523 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 84 79.31 22.73 REMARK 500 LEU A 262 59.55 -90.16 REMARK 500 CYS A 367 126.15 -171.70 REMARK 500 TYR A 375 -11.48 78.91 REMARK 500 LYS A 389 143.73 -172.27 REMARK 500 CYS A 459 -115.68 -127.89 REMARK 500 SER A 460 -80.76 -91.97 REMARK 500 VAL A 505 106.81 78.21 REMARK 500 ASN B 48 46.75 36.43 REMARK 500 HIS B 143 76.05 -117.87 REMARK 500 TYR B 375 -0.89 83.03 REMARK 500 CYS B 459 -118.09 -134.47 REMARK 500 SER B 460 -75.22 -91.17 REMARK 500 VAL B 505 108.24 77.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 8WX7 A 1 525 UNP Q06124 PTN11_HUMAN 1 525 DBREF 8WX7 B 1 525 UNP Q06124 PTN11_HUMAN 1 525 SEQADV 8WX7 GLY A 0 UNP Q06124 EXPRESSION TAG SEQADV 8WX7 GLY B 0 UNP Q06124 EXPRESSION TAG SEQRES 1 A 526 GLY MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR SEQRES 2 A 526 GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL SEQRES 3 A 526 ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO SEQRES 4 A 526 GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL SEQRES 5 A 526 THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP SEQRES 6 A 526 LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU SEQRES 7 A 526 VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU SEQRES 8 A 526 LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN SEQRES 9 A 526 CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS SEQRES 10 A 526 LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS SEQRES 11 A 526 GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER SEQRES 12 A 526 HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP SEQRES 13 A 526 ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR SEQRES 14 A 526 HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL SEQRES 15 A 526 GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL SEQRES 16 A 526 GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY SEQRES 17 A 526 THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG SEQRES 18 A 526 ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SEQRES 19 A 526 SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY SEQRES 20 A 526 PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS SEQRES 21 A 526 LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU SEQRES 22 A 526 ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE SEQRES 23 A 526 ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN SEQRES 24 A 526 GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET SEQRES 25 A 526 PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS SEQRES 26 A 526 LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR SEQRES 27 A 526 VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER SEQRES 28 A 526 ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY SEQRES 29 A 526 LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA SEQRES 30 A 526 LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS SEQRES 31 A 526 GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS SEQRES 32 A 526 LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL SEQRES 33 A 526 TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL SEQRES 34 A 526 PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU SEQRES 35 A 526 VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO SEQRES 36 A 526 VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 37 A 526 THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG SEQRES 38 A 526 GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR SEQRES 39 A 526 ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN SEQRES 40 A 526 THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN SEQRES 41 A 526 HIS TYR ILE GLU THR LEU SEQRES 1 B 526 GLY MET THR SER ARG ARG TRP PHE HIS PRO ASN ILE THR SEQRES 2 B 526 GLY VAL GLU ALA GLU ASN LEU LEU LEU THR ARG GLY VAL SEQRES 3 B 526 ASP GLY SER PHE LEU ALA ARG PRO SER LYS SER ASN PRO SEQRES 4 B 526 GLY ASP PHE THR LEU SER VAL ARG ARG ASN GLY ALA VAL SEQRES 5 B 526 THR HIS ILE LYS ILE GLN ASN THR GLY ASP TYR TYR ASP SEQRES 6 B 526 LEU TYR GLY GLY GLU LYS PHE ALA THR LEU ALA GLU LEU SEQRES 7 B 526 VAL GLN TYR TYR MET GLU HIS HIS GLY GLN LEU LYS GLU SEQRES 8 B 526 LYS ASN GLY ASP VAL ILE GLU LEU LYS TYR PRO LEU ASN SEQRES 9 B 526 CYS ALA ASP PRO THR SER GLU ARG TRP PHE HIS GLY HIS SEQRES 10 B 526 LEU SER GLY LYS GLU ALA GLU LYS LEU LEU THR GLU LYS SEQRES 11 B 526 GLY LYS HIS GLY SER PHE LEU VAL ARG GLU SER GLN SER SEQRES 12 B 526 HIS PRO GLY ASP PHE VAL LEU SER VAL ARG THR GLY ASP SEQRES 13 B 526 ASP LYS GLY GLU SER ASN ASP GLY LYS SER LYS VAL THR SEQRES 14 B 526 HIS VAL MET ILE ARG CYS GLN GLU LEU LYS TYR ASP VAL SEQRES 15 B 526 GLY GLY GLY GLU ARG PHE ASP SER LEU THR ASP LEU VAL SEQRES 16 B 526 GLU HIS TYR LYS LYS ASN PRO MET VAL GLU THR LEU GLY SEQRES 17 B 526 THR VAL LEU GLN LEU LYS GLN PRO LEU ASN THR THR ARG SEQRES 18 B 526 ILE ASN ALA ALA GLU ILE GLU SER ARG VAL ARG GLU LEU SEQRES 19 B 526 SER LYS LEU ALA GLU THR THR ASP LYS VAL LYS GLN GLY SEQRES 20 B 526 PHE TRP GLU GLU PHE GLU THR LEU GLN GLN GLN GLU CYS SEQRES 21 B 526 LYS LEU LEU TYR SER ARG LYS GLU GLY GLN ARG GLN GLU SEQRES 22 B 526 ASN LYS ASN LYS ASN ARG TYR LYS ASN ILE LEU PRO PHE SEQRES 23 B 526 ASP HIS THR ARG VAL VAL LEU HIS ASP GLY ASP PRO ASN SEQRES 24 B 526 GLU PRO VAL SER ASP TYR ILE ASN ALA ASN ILE ILE MET SEQRES 25 B 526 PRO GLU PHE GLU THR LYS CYS ASN ASN SER LYS PRO LYS SEQRES 26 B 526 LYS SER TYR ILE ALA THR GLN GLY CYS LEU GLN ASN THR SEQRES 27 B 526 VAL ASN ASP PHE TRP ARG MET VAL PHE GLN GLU ASN SER SEQRES 28 B 526 ARG VAL ILE VAL MET THR THR LYS GLU VAL GLU ARG GLY SEQRES 29 B 526 LYS SER LYS CYS VAL LYS TYR TRP PRO ASP GLU TYR ALA SEQRES 30 B 526 LEU LYS GLU TYR GLY VAL MET ARG VAL ARG ASN VAL LYS SEQRES 31 B 526 GLU SER ALA ALA HIS ASP TYR THR LEU ARG GLU LEU LYS SEQRES 32 B 526 LEU SER LYS VAL GLY GLN GLY ASN THR GLU ARG THR VAL SEQRES 33 B 526 TRP GLN TYR HIS PHE ARG THR TRP PRO ASP HIS GLY VAL SEQRES 34 B 526 PRO SER ASP PRO GLY GLY VAL LEU ASP PHE LEU GLU GLU SEQRES 35 B 526 VAL HIS HIS LYS GLN GLU SER ILE MET ASP ALA GLY PRO SEQRES 36 B 526 VAL VAL VAL HIS CYS SER ALA GLY ILE GLY ARG THR GLY SEQRES 37 B 526 THR PHE ILE VAL ILE ASP ILE LEU ILE ASP ILE ILE ARG SEQRES 38 B 526 GLU LYS GLY VAL ASP CYS ASP ILE ASP VAL PRO LYS THR SEQRES 39 B 526 ILE GLN MET VAL ARG SER GLN ARG SER GLY MET VAL GLN SEQRES 40 B 526 THR GLU ALA GLN TYR ARG PHE ILE TYR MET ALA VAL GLN SEQRES 41 B 526 HIS TYR ILE GLU THR LEU HET EDO A 601 4 HET XD8 A 602 31 HET SO4 A 603 5 HET SO4 A 604 5 HET SO4 A 605 5 HET SO4 A 606 5 HET SO4 A 607 5 HET SO4 A 608 5 HET SO4 A 609 5 HET SO4 A 610 5 HET SO4 A 611 5 HET EDO B 601 4 HET XD8 B 602 31 HET SO4 B 603 5 HET SO4 B 604 5 HET SO4 B 605 5 HET SO4 B 606 5 HET SO4 B 607 5 HET SO4 B 608 5 HET CL B 609 1 HET CL B 610 1 HET CL B 611 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM XD8 (5~{S})-1'-[6-AZANYL-5-(2-AZANYL-3-CHLORANYL-PYRIDIN-4- HETNAM 2 XD8 YL)SULFANYL-PYRAZIN-2-YL]SPIRO[5,7- HETNAM 3 XD8 DIHYDROCYCLOPENTA[B]PYRIDINE-6,4'-PIPERIDINE]-5-AMINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 2(C2 H6 O2) FORMUL 4 XD8 2(C21 H23 CL N8 S) FORMUL 5 SO4 15(O4 S 2-) FORMUL 22 CL 3(CL 1-) FORMUL 25 HOH *314(H2 O) HELIX 1 AA1 THR A 12 ARG A 23 1 12 HELIX 2 AA2 THR A 73 GLU A 83 1 11 HELIX 3 AA3 SER A 118 GLY A 130 1 13 HELIX 4 AA4 SER A 189 ASN A 200 1 12 HELIX 5 AA5 GLU A 225 SER A 234 1 10 HELIX 6 AA6 GLY A 246 GLN A 257 1 12 HELIX 7 AA7 GLU A 258 LEU A 262 5 5 HELIX 8 AA8 LYS A 266 ASN A 277 5 12 HELIX 9 AA9 LEU A 334 ASN A 336 5 3 HELIX 10 AB1 THR A 337 GLU A 348 1 12 HELIX 11 AB2 PRO A 432 SER A 448 1 17 HELIX 12 AB3 ILE A 463 GLY A 483 1 21 HELIX 13 AB4 ASP A 489 SER A 499 1 11 HELIX 14 AB5 THR A 507 THR A 524 1 18 HELIX 15 AB6 THR B 12 ARG B 23 1 12 HELIX 16 AB7 THR B 73 GLU B 83 1 11 HELIX 17 AB8 SER B 118 GLY B 130 1 13 HELIX 18 AB9 SER B 189 ASN B 200 1 12 HELIX 19 AC1 GLU B 225 LYS B 235 1 11 HELIX 20 AC2 GLN B 245 GLN B 257 1 13 HELIX 21 AC3 GLU B 258 LEU B 262 5 5 HELIX 22 AC4 LYS B 266 ASN B 277 5 12 HELIX 23 AC5 PHE B 285 HIS B 287 5 3 HELIX 24 AC6 LYS B 322 LYS B 325 5 4 HELIX 25 AC7 LEU B 334 ASN B 336 5 3 HELIX 26 AC8 THR B 337 GLU B 348 1 12 HELIX 27 AC9 PRO B 432 SER B 448 1 17 HELIX 28 AD1 GLY B 464 GLY B 483 1 20 HELIX 29 AD2 ASP B 489 SER B 499 1 11 HELIX 30 AD3 THR B 507 THR B 524 1 18 SHEET 1 AA1 6 LYS A 70 PHE A 71 0 SHEET 2 AA1 6 TYR A 63 LEU A 65 -1 N TYR A 63 O PHE A 71 SHEET 3 AA1 6 ALA A 50 GLN A 57 -1 N GLN A 57 O ASP A 64 SHEET 4 AA1 6 PHE A 41 ARG A 47 -1 N PHE A 41 O ILE A 56 SHEET 5 AA1 6 SER A 28 PRO A 33 -1 N ARG A 32 O THR A 42 SHEET 6 AA1 6 TYR A 100 PRO A 101 1 O TYR A 100 N PHE A 29 SHEET 1 AA2 5 LYS A 178 ASP A 180 0 SHEET 2 AA2 5 LYS A 166 GLN A 175 -1 N ARG A 173 O ASP A 180 SHEET 3 AA2 5 PHE A 147 THR A 153 -1 N LEU A 149 O VAL A 170 SHEET 4 AA2 5 SER A 134 GLU A 139 -1 N ARG A 138 O VAL A 148 SHEET 5 AA2 5 GLN A 214 PRO A 215 1 O GLN A 214 N PHE A 135 SHEET 1 AA3 2 ILE A 221 ASN A 222 0 SHEET 2 AA3 2 ASP A 487 ILE A 488 -1 O ILE A 488 N ILE A 221 SHEET 1 AA4 9 ARG A 289 VAL A 291 0 SHEET 2 AA4 9 TYR A 304 ILE A 310 -1 O ALA A 307 N VAL A 290 SHEET 3 AA4 9 TYR A 327 THR A 330 -1 O TYR A 327 N ILE A 310 SHEET 4 AA4 9 VAL A 455 HIS A 458 1 O VAL A 457 N ILE A 328 SHEET 5 AA4 9 VAL A 352 MET A 355 1 N VAL A 354 O VAL A 456 SHEET 6 AA4 9 GLN A 408 PHE A 420 1 O TYR A 418 N ILE A 353 SHEET 7 AA4 9 TYR A 396 LYS A 405 -1 N THR A 397 O HIS A 419 SHEET 8 AA4 9 MET A 383 ALA A 392 -1 N ARG A 384 O SER A 404 SHEET 9 AA4 9 LEU A 377 TYR A 380 -1 N TYR A 380 O MET A 383 SHEET 1 AA5 2 VAL A 360 GLU A 361 0 SHEET 2 AA5 2 LYS A 364 SER A 365 -1 O LYS A 364 N GLU A 361 SHEET 1 AA6 6 LYS B 70 PHE B 71 0 SHEET 2 AA6 6 TYR B 63 LEU B 65 -1 N TYR B 63 O PHE B 71 SHEET 3 AA6 6 ALA B 50 GLN B 57 -1 N GLN B 57 O ASP B 64 SHEET 4 AA6 6 PHE B 41 ARG B 47 -1 N ARG B 47 O ALA B 50 SHEET 5 AA6 6 SER B 28 PRO B 33 -1 N SER B 28 O ARG B 46 SHEET 6 AA6 6 TYR B 100 PRO B 101 1 O TYR B 100 N PHE B 29 SHEET 1 AA7 2 LEU B 88 LYS B 89 0 SHEET 2 AA7 2 VAL B 95 ILE B 96 -1 O ILE B 96 N LEU B 88 SHEET 1 AA8 5 LYS B 178 ASP B 180 0 SHEET 2 AA8 5 LYS B 166 GLN B 175 -1 N ARG B 173 O ASP B 180 SHEET 3 AA8 5 PHE B 147 THR B 153 -1 N PHE B 147 O ILE B 172 SHEET 4 AA8 5 SER B 134 GLU B 139 -1 N LEU B 136 O SER B 150 SHEET 5 AA8 5 GLN B 214 PRO B 215 1 O GLN B 214 N PHE B 135 SHEET 1 AA9 2 ILE B 221 ASN B 222 0 SHEET 2 AA9 2 ASP B 487 ILE B 488 -1 O ILE B 488 N ILE B 221 SHEET 1 AB1 9 ARG B 289 VAL B 291 0 SHEET 2 AB1 9 TYR B 304 ILE B 310 -1 O ALA B 307 N VAL B 290 SHEET 3 AB1 9 TYR B 327 THR B 330 -1 O TYR B 327 N ILE B 310 SHEET 4 AB1 9 VAL B 455 HIS B 458 1 O VAL B 457 N ILE B 328 SHEET 5 AB1 9 VAL B 352 MET B 355 1 N VAL B 354 O VAL B 456 SHEET 6 AB1 9 GLN B 408 PHE B 420 1 O TYR B 418 N MET B 355 SHEET 7 AB1 9 TYR B 396 LYS B 405 -1 N ARG B 399 O GLN B 417 SHEET 8 AB1 9 MET B 383 ALA B 392 -1 N ARG B 384 O SER B 404 SHEET 9 AB1 9 LEU B 377 TYR B 380 -1 N TYR B 380 O MET B 383 SHEET 1 AB2 2 VAL B 360 GLU B 361 0 SHEET 2 AB2 2 LYS B 364 SER B 365 -1 O LYS B 364 N GLU B 361 CRYST1 45.711 211.121 55.839 90.00 95.83 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021877 0.000000 0.002235 0.00000 SCALE2 0.000000 0.004737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018002 0.00000