HEADER NUCLEAR PROTEIN 30-OCT-23 8WXQ TITLE STRUCTURE OF WDR5 IN COMPLEX WITH WIN MOTIF CONTAINING MBD3C COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: GLY-ALA-ALA-ARG-CYS-ARG-VAL-PHE-SER-PRO; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, MBD3C, WIN MOTIF, CHROMATIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.XU,Y.YANG REVDAT 2 17-JUL-24 8WXQ 1 JRNL REVDAT 1 26-JUN-24 8WXQ 0 JRNL AUTH Y.YANG,L.XU,S.ZHANG,L.YAO,Y.DING,W.LI,X.CHEN JRNL TITL STRUCTURAL STUDIES OF WDR5 IN COMPLEX WITH MBD3C WIN MOTIF JRNL TITL 2 REVEAL A UNIQUE BINDING MODE. JRNL REF J.BIOL.CHEM. V. 300 07468 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38876301 JRNL DOI 10.1016/J.JBC.2024.107468 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 50398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 5086 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.6700 - 5.9000 0.94 1563 162 0.2118 0.2193 REMARK 3 2 5.9000 - 4.6800 0.99 1567 180 0.1654 0.1736 REMARK 3 3 4.6800 - 4.0900 0.99 1553 189 0.1400 0.1632 REMARK 3 4 4.0900 - 3.7200 0.99 1549 183 0.1518 0.1871 REMARK 3 5 3.7200 - 3.4500 1.00 1508 213 0.1629 0.1850 REMARK 3 6 3.4500 - 3.2500 1.00 1553 185 0.1668 0.1841 REMARK 3 7 3.2500 - 3.0900 1.00 1563 161 0.1752 0.2082 REMARK 3 8 3.0900 - 2.9500 1.00 1537 171 0.1857 0.2210 REMARK 3 9 2.9500 - 2.8400 1.00 1552 169 0.1843 0.2218 REMARK 3 10 2.8400 - 2.7400 1.00 1572 154 0.1811 0.2520 REMARK 3 11 2.7400 - 2.6500 1.00 1571 146 0.1876 0.1982 REMARK 3 12 2.6500 - 2.5800 1.00 1571 161 0.1892 0.2472 REMARK 3 13 2.5800 - 2.5100 1.00 1514 156 0.1880 0.2202 REMARK 3 14 2.5100 - 2.4500 0.99 1570 183 0.1839 0.2471 REMARK 3 15 2.4500 - 2.3900 1.00 1490 189 0.1886 0.2128 REMARK 3 16 2.3900 - 2.3400 1.00 1537 164 0.1923 0.2202 REMARK 3 17 2.3400 - 2.3000 1.00 1538 179 0.1988 0.2359 REMARK 3 18 2.3000 - 2.2500 1.00 1487 193 0.2005 0.2184 REMARK 3 19 2.2500 - 2.2100 1.00 1575 177 0.1929 0.2482 REMARK 3 20 2.2100 - 2.1700 0.99 1478 178 0.1909 0.2102 REMARK 3 21 2.1700 - 2.1400 1.00 1555 181 0.1923 0.2220 REMARK 3 22 2.1400 - 2.1100 0.99 1532 168 0.2005 0.2209 REMARK 3 23 2.1100 - 2.0800 0.99 1534 155 0.1948 0.2514 REMARK 3 24 2.0800 - 2.0500 0.98 1483 175 0.2066 0.2250 REMARK 3 25 2.0500 - 2.0200 0.97 1483 195 0.2084 0.2433 REMARK 3 26 2.0200 - 1.9900 0.96 1449 149 0.2240 0.2640 REMARK 3 27 1.9900 - 1.9700 0.94 1440 144 0.2483 0.2504 REMARK 3 28 1.9700 - 1.9400 0.91 1453 142 0.2507 0.2856 REMARK 3 29 1.9400 - 1.9200 0.89 1370 162 0.2523 0.2606 REMARK 3 30 1.9200 - 1.9000 0.78 1165 122 0.2568 0.2696 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4931 REMARK 3 ANGLE : 0.868 6693 REMARK 3 CHIRALITY : 0.058 758 REMARK 3 PLANARITY : 0.006 831 REMARK 3 DIHEDRAL : 7.499 654 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 31 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9184 10.5001 45.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.1342 REMARK 3 T33: 0.1325 T12: 0.0101 REMARK 3 T13: 0.0204 T23: -0.0221 REMARK 3 L TENSOR REMARK 3 L11: 2.9750 L22: 1.8303 REMARK 3 L33: 2.5922 L12: 0.1859 REMARK 3 L13: -0.8328 L23: -0.1767 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: -0.0806 S13: -0.1670 REMARK 3 S21: 0.1180 S22: -0.0418 S23: 0.0261 REMARK 3 S31: 0.0459 S32: 0.1095 S33: 0.0566 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 40 THROUGH 49) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8516 13.8991 58.0241 REMARK 3 T TENSOR REMARK 3 T11: 0.4700 T22: 0.2952 REMARK 3 T33: 0.1868 T12: 0.0128 REMARK 3 T13: 0.1426 T23: 0.0099 REMARK 3 L TENSOR REMARK 3 L11: 6.0810 L22: 9.4951 REMARK 3 L33: 3.4602 L12: -3.0153 REMARK 3 L13: 1.0939 L23: 1.0362 REMARK 3 S TENSOR REMARK 3 S11: -0.1039 S12: -0.9874 S13: -0.2070 REMARK 3 S21: 1.1232 S22: 0.1989 S23: 0.4439 REMARK 3 S31: -0.3557 S32: -0.4003 S33: -0.1261 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 31 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7815 33.7963 13.4507 REMARK 3 T TENSOR REMARK 3 T11: 0.2035 T22: 0.0788 REMARK 3 T33: 0.1868 T12: -0.0308 REMARK 3 T13: 0.0292 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.6418 L22: 2.4617 REMARK 3 L33: 5.0856 L12: -0.5347 REMARK 3 L13: -0.6879 L23: 0.0949 REMARK 3 S TENSOR REMARK 3 S11: 0.0107 S12: -0.0417 S13: -0.0624 REMARK 3 S21: 0.0103 S22: -0.1941 S23: 0.1405 REMARK 3 S31: -0.1414 S32: 0.1407 S33: 0.1664 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 40 THROUGH 49) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3276 37.7965 1.5913 REMARK 3 T TENSOR REMARK 3 T11: 0.4688 T22: 0.1970 REMARK 3 T33: 0.2433 T12: -0.0118 REMARK 3 T13: 0.0779 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 8.6936 L22: 7.8514 REMARK 3 L33: 6.6544 L12: 0.3166 REMARK 3 L13: -0.8843 L23: -1.6267 REMARK 3 S TENSOR REMARK 3 S11: -0.0648 S12: 0.7642 S13: -0.4424 REMARK 3 S21: -0.8352 S22: -0.3380 S23: -0.0893 REMARK 3 S31: -0.1236 S32: 0.2385 S33: 0.3145 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042214. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50606 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 18% PEG 600, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.17450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.71000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.17450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.71000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 MET A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 ASP A 212 REMARK 465 ASP A 213 REMARK 465 ASN A 214 REMARK 465 GLN C 50 REMARK 465 GLY C 51 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 HIS B 22 REMARK 465 MET B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 GLN D 50 REMARK 465 GLY D 51 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 ILE A 210 CG1 CG2 CD1 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS B 227 CG CD CE NZ REMARK 470 LYS B 331 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 67 6.19 80.52 REMARK 500 GLU A 151 6.07 80.35 REMARK 500 LEU A 234 34.83 -83.83 REMARK 500 LYS B 67 4.65 80.74 REMARK 500 LEU B 234 42.64 -81.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 594 DISTANCE = 6.35 ANGSTROMS DBREF 8WXQ A 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXQ C 40 51 PDB 8WXQ 8WXQ 40 51 DBREF 8WXQ B 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXQ D 40 51 PDB 8WXQ 8WXQ 40 51 SEQADV 8WXQ GLY A 20 UNP P61964 EXPRESSION TAG SEQADV 8WXQ SER A 21 UNP P61964 EXPRESSION TAG SEQADV 8WXQ HIS A 22 UNP P61964 EXPRESSION TAG SEQADV 8WXQ MET A 23 UNP P61964 EXPRESSION TAG SEQADV 8WXQ GLY B 20 UNP P61964 EXPRESSION TAG SEQADV 8WXQ SER B 21 UNP P61964 EXPRESSION TAG SEQADV 8WXQ HIS B 22 UNP P61964 EXPRESSION TAG SEQADV 8WXQ MET B 23 UNP P61964 EXPRESSION TAG SEQRES 1 A 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 A 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 A 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 A 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 A 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 A 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 A 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 A 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 A 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 A 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 A 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 A 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 A 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 A 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 A 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 A 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 A 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 A 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 A 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 A 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 A 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 A 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 A 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 A 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 A 315 SER ASP CYS SEQRES 1 C 12 GLY ALA ALA ARG CYS ARG VAL PHE SER PRO GLN GLY SEQRES 1 B 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 B 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 B 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 B 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 B 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 B 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 B 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 B 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 B 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 B 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 B 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 B 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 B 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 B 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 B 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 B 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 B 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 B 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 B 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 B 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 B 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 B 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 B 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 B 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 B 315 SER ASP CYS SEQRES 1 D 12 GLY ALA ALA ARG CYS ARG VAL PHE SER PRO GLN GLY FORMUL 5 HOH *390(H2 O) HELIX 1 AA1 ALA C 41 ARG C 45 5 5 HELIX 2 AA2 ALA D 41 ARG D 45 5 5 SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O SER A 63 N SER A 49 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O GLU A 80 N ILE A 71 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O ALA A 105 N SER A 91 SHEET 3 AA3 4 LEU A 111 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LEU A 125 -1 O LEU A 122 N ILE A 113 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 206 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O ALA B 61 N LYS B 52 SHEET 3 AA9 4 ILE B 69 GLY B 73 -1 O TRP B 72 N LEU B 60 SHEET 4 AA9 4 PHE B 79 ILE B 83 -1 O ILE B 83 N ILE B 69 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O ALA B 105 N SER B 91 SHEET 3 AB1 4 LEU B 111 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 AB1 4 CYS B 121 LEU B 125 -1 O LEU B 122 N ILE B 113 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 206 N ILE B 197 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 ILE B 229 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O LEU B 249 N LEU B 240 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267 SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O VAL B 294 N ILE B 285 CRYST1 116.349 47.420 129.474 90.00 113.18 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008595 0.000000 0.003680 0.00000 SCALE2 0.000000 0.021088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008402 0.00000