HEADER NUCLEAR PROTEIN 30-OCT-23 8WXR TITLE STRUCTURE OF WDR5 IN COMPLEX WITH WIN MOTIF CONTAINING MBD3C F47A COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MBD3C; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_TAXID: 10090; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, MBD3C, WIN MOTIF, CHROMATIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.XU,Y.YANG REVDAT 2 17-JUL-24 8WXR 1 JRNL REVDAT 1 26-JUN-24 8WXR 0 JRNL AUTH Y.YANG,L.XU,S.ZHANG,L.YAO,Y.DING,W.LI,X.CHEN JRNL TITL STRUCTURAL STUDIES OF WDR5 IN COMPLEX WITH MBD3C WIN MOTIF JRNL TITL 2 REVEAL A UNIQUE BINDING MODE. JRNL REF J.BIOL.CHEM. V. 300 07468 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38876301 JRNL DOI 10.1016/J.JBC.2024.107468 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.6 REMARK 3 NUMBER OF REFLECTIONS : 31827 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.750 REMARK 3 FREE R VALUE TEST SET COUNT : 3103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 12.6500 - 5.6700 0.95 1448 160 0.1616 0.1829 REMARK 3 2 5.6700 - 4.5700 0.98 1484 130 0.1401 0.1627 REMARK 3 3 4.5700 - 4.0100 0.96 1392 189 0.1302 0.1553 REMARK 3 4 4.0100 - 3.6600 0.98 1415 179 0.1364 0.1731 REMARK 3 5 3.6600 - 3.4000 0.98 1427 153 0.1463 0.1829 REMARK 3 6 3.4000 - 3.2000 0.97 1423 143 0.1504 0.1834 REMARK 3 7 3.2000 - 3.0400 0.96 1404 170 0.1564 0.2045 REMARK 3 8 3.0400 - 2.9100 0.94 1376 128 0.1681 0.2333 REMARK 3 9 2.9100 - 2.8000 0.94 1342 169 0.1664 0.2132 REMARK 3 10 2.8000 - 2.7100 0.93 1345 160 0.1618 0.2330 REMARK 3 11 2.7100 - 2.6200 0.91 1320 125 0.1616 0.2135 REMARK 3 12 2.6200 - 2.5500 0.90 1328 131 0.1618 0.2224 REMARK 3 13 2.5500 - 2.4800 0.90 1269 149 0.1630 0.2189 REMARK 3 14 2.4800 - 2.4200 0.88 1281 142 0.1649 0.2347 REMARK 3 15 2.4200 - 2.3700 0.87 1261 132 0.1598 0.2275 REMARK 3 16 2.3700 - 2.3200 0.88 1295 124 0.1508 0.2083 REMARK 3 17 2.3200 - 2.2700 0.85 1234 126 0.1585 0.2339 REMARK 3 18 2.2700 - 2.2300 0.85 1201 133 0.1585 0.2307 REMARK 3 19 2.2300 - 2.1900 0.83 1220 132 0.1577 0.2277 REMARK 3 20 2.1900 - 2.1500 0.83 1171 128 0.1588 0.2502 REMARK 3 21 2.1500 - 2.1200 0.82 1196 122 0.1575 0.2329 REMARK 3 22 2.1200 - 2.0800 0.60 892 78 0.1667 0.2215 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4910 REMARK 3 ANGLE : 1.022 6664 REMARK 3 CHIRALITY : 0.063 758 REMARK 3 PLANARITY : 0.006 827 REMARK 3 DIHEDRAL : 7.679 651 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 31 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0573 11.6157 -5.2152 REMARK 3 T TENSOR REMARK 3 T11: 0.0775 T22: 0.1377 REMARK 3 T33: 0.0653 T12: 0.0005 REMARK 3 T13: -0.0042 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.3245 L22: 1.6403 REMARK 3 L33: 1.2913 L12: -0.1647 REMARK 3 L13: 0.0684 L23: -0.0419 REMARK 3 S TENSOR REMARK 3 S11: 0.0711 S12: 0.0726 S13: -0.0196 REMARK 3 S21: -0.0897 S22: -0.0932 S23: 0.0297 REMARK 3 S31: 0.0337 S32: -0.1845 S33: 0.0162 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 40 THROUGH 48) REMARK 3 ORIGIN FOR THE GROUP (A): -3.0797 16.2946 -3.7180 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.2712 REMARK 3 T33: 0.2185 T12: 0.0486 REMARK 3 T13: -0.0107 T23: -0.0407 REMARK 3 L TENSOR REMARK 3 L11: 6.9246 L22: 5.2380 REMARK 3 L33: 5.8562 L12: 1.8404 REMARK 3 L13: 1.8198 L23: -1.6632 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.2478 S13: -0.3082 REMARK 3 S21: -0.2941 S22: 0.0778 S23: -0.7111 REMARK 3 S31: 0.3403 S32: 0.7986 S33: -0.1196 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 31 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0471 8.0544 -43.6635 REMARK 3 T TENSOR REMARK 3 T11: 0.0736 T22: 0.0539 REMARK 3 T33: 0.1150 T12: 0.0133 REMARK 3 T13: 0.0028 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 2.0694 L22: 1.9044 REMARK 3 L33: 1.4895 L12: 0.5027 REMARK 3 L13: -0.1595 L23: 0.5405 REMARK 3 S TENSOR REMARK 3 S11: 0.0376 S12: 0.0324 S13: 0.0767 REMARK 3 S21: 0.0940 S22: -0.0243 S23: 0.0383 REMARK 3 S31: 0.0284 S32: 0.0206 S33: -0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 40 THROUGH 47) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7899 13.6864 -46.4128 REMARK 3 T TENSOR REMARK 3 T11: 0.1318 T22: 0.1284 REMARK 3 T33: 0.2791 T12: 0.0349 REMARK 3 T13: -0.0001 T23: 0.0476 REMARK 3 L TENSOR REMARK 3 L11: 5.4177 L22: 8.5827 REMARK 3 L33: 5.2930 L12: -3.6812 REMARK 3 L13: 3.2784 L23: -0.1723 REMARK 3 S TENSOR REMARK 3 S11: -0.0737 S12: -0.2068 S13: 0.1081 REMARK 3 S21: 0.4616 S22: -0.0116 S23: 0.6278 REMARK 3 S31: -0.2661 S32: -0.6035 S33: 0.0829 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31841 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.51400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 MET A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 PRO C 49 REMARK 465 GLN C 50 REMARK 465 GLY C 51 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 HIS B 22 REMARK 465 MET B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 ASP B 213 REMARK 465 SER D 48 REMARK 465 PRO D 49 REMARK 465 GLN D 50 REMARK 465 GLY D 51 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 LYS A 247 CG CD CE NZ REMARK 470 LYS B 87 CG CD CE NZ REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 ARG B 181 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 48 CG1 - CB - CG2 ANGL. DEV. = -11.2 DEGREES REMARK 500 LYS B 227 CA - CB - CG ANGL. DEV. = -13.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 212 -122.19 51.79 REMARK 500 ASP B 324 -61.35 -120.23 REMARK 500 REMARK 500 REMARK: NULL DBREF 8WXR A 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXR C 40 51 PDB 8WXR 8WXR 40 51 DBREF 8WXR B 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXR D 40 51 PDB 8WXR 8WXR 40 51 SEQADV 8WXR GLY A 20 UNP P61964 EXPRESSION TAG SEQADV 8WXR SER A 21 UNP P61964 EXPRESSION TAG SEQADV 8WXR HIS A 22 UNP P61964 EXPRESSION TAG SEQADV 8WXR MET A 23 UNP P61964 EXPRESSION TAG SEQADV 8WXR GLY B 20 UNP P61964 EXPRESSION TAG SEQADV 8WXR SER B 21 UNP P61964 EXPRESSION TAG SEQADV 8WXR HIS B 22 UNP P61964 EXPRESSION TAG SEQADV 8WXR MET B 23 UNP P61964 EXPRESSION TAG SEQRES 1 A 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 A 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 A 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 A 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 A 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 A 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 A 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 A 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 A 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 A 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 A 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 A 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 A 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 A 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 A 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 A 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 A 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 A 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 A 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 A 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 A 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 A 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 A 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 A 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 A 315 SER ASP CYS SEQRES 1 C 12 GLY ALA ALA ARG CYS ARG VAL ALA SER PRO GLN GLY SEQRES 1 B 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 B 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 B 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 B 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 B 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 B 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 B 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 B 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 B 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 B 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 B 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 B 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 B 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 B 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 B 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 B 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 B 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 B 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 B 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 B 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 B 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 B 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 B 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 B 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 B 315 SER ASP CYS SEQRES 1 D 12 GLY ALA ALA ARG CYS ARG VAL ALA SER PRO GLN GLY FORMUL 5 HOH *383(H2 O) HELIX 1 AA1 ALA C 41 ARG C 45 5 5 HELIX 2 AA2 ALA D 41 ARG D 45 5 5 SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O LYS A 70 N SER A 62 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O ILE A 83 N ILE A 69 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O VAL A 103 N ALA A 94 SHEET 3 AA3 4 THR A 110 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LYS A 126 -1 O LEU A 122 N ILE A 113 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 206 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LYS A 247 N ASP A 242 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O ALA B 61 N LYS B 52 SHEET 3 AA9 4 ILE B 69 GLY B 73 -1 O LYS B 70 N SER B 62 SHEET 4 AA9 4 PHE B 79 ILE B 83 -1 O GLU B 80 N ILE B 71 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O ALA B 105 N SER B 91 SHEET 3 AB1 4 LEU B 111 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 AB1 4 CYS B 121 LEU B 125 -1 O LEU B 125 N LEU B 111 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 209 N CYS B 195 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 ILE B 229 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O THR B 237 N THR B 233 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O LYS B 247 N ASP B 242 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267 SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O VAL B 294 N ILE B 285 CRYST1 64.697 47.028 103.050 90.00 107.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015457 0.000000 0.004864 0.00000 SCALE2 0.000000 0.021264 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010173 0.00000