HEADER HYDROLASE 01-NOV-23 8WZ6 TITLE THE CRYSTAL STRUCTURE OF LEGIONELLA PNEUMOPHILA ADENOSYLHOMOCYSTEINASE TITLE 2 LPG2021 IN TERNARY COMPLEX WITH NAD AND DZNEP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENOSYLHOMOCYSTEINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: AHCY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LEGIONELLA PNEUMOPHILA, SAH HYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.GAO,R.XIE,Y.N.CHEN,J.M.MA,H.H.GE REVDAT 2 20-NOV-24 8WZ6 1 JRNL REVDAT 1 06-NOV-24 8WZ6 0 JRNL AUTH Y.GAO,R.XIE,Y.CHEN,B.YANG,M.WANG,L.HUA,X.WANG,W.WANG,N.WANG, JRNL AUTH 2 H.GE,J.MA JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE RECOGNITION BY A JRNL TITL 2 S-ADENOSYLHOMOCYSTEINE HYDROLASE LPG2021 FROM LEGIONELLA JRNL TITL 3 PNEUMOPHILA. JRNL REF INT.J.BIOL.MACROMOL. V. 270 32289 2024 JRNL REFN ISSN 0141-8130 JRNL PMID 38735607 JRNL DOI 10.1016/J.IJBIOMAC.2024.132289 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 29682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7300 - 4.8100 0.96 2815 160 0.2305 0.2898 REMARK 3 2 4.8100 - 3.8200 0.99 2777 138 0.1659 0.1878 REMARK 3 3 3.8200 - 3.3400 0.99 2700 154 0.1762 0.2174 REMARK 3 4 3.3400 - 3.0300 0.99 2670 146 0.2121 0.2534 REMARK 3 5 3.0300 - 2.8100 0.98 2647 142 0.1938 0.2460 REMARK 3 6 2.8100 - 2.6500 0.96 2568 140 0.2105 0.2687 REMARK 3 7 2.6500 - 2.5200 0.94 2545 132 0.2024 0.2617 REMARK 3 8 2.5100 - 2.4100 0.93 2477 144 0.1978 0.2755 REMARK 3 9 2.4100 - 2.3100 0.89 2410 118 0.2177 0.2706 REMARK 3 10 2.3100 - 2.2300 0.88 2337 121 0.2345 0.3017 REMARK 3 11 2.2300 - 2.1600 0.83 2228 113 0.2676 0.3291 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 NULL REMARK 3 ANGLE : 1.356 NULL REMARK 3 CHIRALITY : 0.063 532 REMARK 3 PLANARITY : 0.010 595 REMARK 3 DIHEDRAL : 10.125 475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 95 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7639 -26.3974 -0.5971 REMARK 3 T TENSOR REMARK 3 T11: 0.7178 T22: 0.5359 REMARK 3 T33: 0.5689 T12: -0.0099 REMARK 3 T13: -0.0103 T23: 0.0905 REMARK 3 L TENSOR REMARK 3 L11: 0.2362 L22: 0.2584 REMARK 3 L33: 0.2712 L12: -0.2133 REMARK 3 L13: 0.1248 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.0003 S13: 0.1334 REMARK 3 S21: -0.0249 S22: 0.0331 S23: 0.0687 REMARK 3 S31: -0.6169 S32: 0.0219 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 96 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.9611 -27.8245 -6.5491 REMARK 3 T TENSOR REMARK 3 T11: 0.7278 T22: 0.6870 REMARK 3 T33: 0.7379 T12: 0.1221 REMARK 3 T13: -0.0648 T23: 0.0855 REMARK 3 L TENSOR REMARK 3 L11: 0.1077 L22: 0.0633 REMARK 3 L33: 0.1271 L12: 0.1227 REMARK 3 L13: 0.0222 L23: -0.0010 REMARK 3 S TENSOR REMARK 3 S11: -0.1882 S12: 0.2645 S13: 0.3138 REMARK 3 S21: 0.0458 S22: 0.2272 S23: 0.4079 REMARK 3 S31: -0.6235 S32: -0.4044 S33: 0.0002 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3141 -42.8435 -5.6158 REMARK 3 T TENSOR REMARK 3 T11: 0.4653 T22: 0.6310 REMARK 3 T33: 0.5517 T12: 0.0015 REMARK 3 T13: -0.0600 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 0.2904 L22: 0.3468 REMARK 3 L33: 0.2910 L12: -0.0197 REMARK 3 L13: 0.3634 L23: 0.0672 REMARK 3 S TENSOR REMARK 3 S11: 0.0004 S12: 0.1951 S13: -0.0468 REMARK 3 S21: -0.0765 S22: -0.0572 S23: 0.0576 REMARK 3 S31: -0.2852 S32: -0.0144 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4444 -56.5117 11.9650 REMARK 3 T TENSOR REMARK 3 T11: 0.3573 T22: 0.5494 REMARK 3 T33: 0.4837 T12: -0.0698 REMARK 3 T13: -0.0041 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.3743 L22: 0.0950 REMARK 3 L33: 0.0892 L12: 0.0484 REMARK 3 L13: -0.1517 L23: 0.0946 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: -0.0210 S13: 0.0100 REMARK 3 S21: -0.0222 S22: 0.1019 S23: -0.0213 REMARK 3 S31: -0.0432 S32: 0.1185 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 267 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2690 -54.4689 10.8424 REMARK 3 T TENSOR REMARK 3 T11: 0.3447 T22: 0.7473 REMARK 3 T33: 0.5154 T12: -0.0715 REMARK 3 T13: -0.0078 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.1722 L22: 0.3667 REMARK 3 L33: 0.6004 L12: 0.1504 REMARK 3 L13: 0.0141 L23: 0.3900 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: 0.1142 S13: 0.0816 REMARK 3 S21: 0.0400 S22: -0.0355 S23: -0.0422 REMARK 3 S31: 0.1690 S32: -0.5262 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9075 -43.5825 13.0057 REMARK 3 T TENSOR REMARK 3 T11: 0.4838 T22: 0.9548 REMARK 3 T33: 0.6907 T12: 0.0732 REMARK 3 T13: -0.0147 T23: -0.0344 REMARK 3 L TENSOR REMARK 3 L11: 0.0463 L22: 0.0824 REMARK 3 L33: 0.1640 L12: 0.0620 REMARK 3 L13: 0.0855 L23: 0.0843 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.1449 S13: 0.1672 REMARK 3 S21: 0.0771 S22: -0.0653 S23: 0.0630 REMARK 3 S31: -0.2622 S32: -0.9205 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 344 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3949 -38.1729 -0.1527 REMARK 3 T TENSOR REMARK 3 T11: 0.4937 T22: 0.5758 REMARK 3 T33: 0.6336 T12: -0.0076 REMARK 3 T13: 0.0005 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.4334 L22: 0.6072 REMARK 3 L33: 0.4321 L12: -0.2185 REMARK 3 L13: 0.4337 L23: 0.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0181 S12: 0.2459 S13: 0.3741 REMARK 3 S21: -0.0543 S22: 0.0461 S23: -0.0956 REMARK 3 S31: -0.3446 S32: -0.2705 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 388 THROUGH 441 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.5697 -48.5577 -6.2400 REMARK 3 T TENSOR REMARK 3 T11: 0.4514 T22: 0.6919 REMARK 3 T33: 0.4758 T12: -0.0770 REMARK 3 T13: 0.0330 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 0.5052 L22: 0.5680 REMARK 3 L33: 0.2806 L12: -0.1915 REMARK 3 L13: -0.2707 L23: -0.1251 REMARK 3 S TENSOR REMARK 3 S11: 0.1072 S12: 0.1815 S13: 0.0509 REMARK 3 S21: -0.1161 S22: -0.1231 S23: -0.0926 REMARK 3 S31: -0.1151 S32: 0.1000 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WZ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042164. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 7.21 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 7.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31464 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 39.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.70 REMARK 200 STARTING MODEL: Q5ZTY7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE 0.1 M BIS-TRIS REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.98200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 38.49100 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.98200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 38.49100 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 76.98200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 38.49100 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.98200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.49100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 65.27350 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -113.05702 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 5 REMARK 465 GLY A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 128 CG CD1 CD2 REMARK 470 LYS A 343 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 18 107.52 -160.25 REMARK 500 HIS A 65 114.19 -35.57 REMARK 500 ALA A 111 139.21 -174.89 REMARK 500 LYS A 197 -75.69 -107.80 REMARK 500 PHE A 200 -63.55 -133.10 REMARK 500 ALA A 286 38.21 -142.83 REMARK 500 ASN A 289 -166.40 -115.78 REMARK 500 ALA A 359 -143.91 -137.56 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8WZ6 A 15 441 UNP A0A2S6F4T2_LEGPN DBREF2 8WZ6 A A0A2S6F4T2 15 441 SEQADV 8WZ6 MET A 5 UNP A0A2S6F4T INITIATING METHIONINE SEQADV 8WZ6 GLY A 6 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 7 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 8 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 9 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 10 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 11 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 12 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 13 UNP A0A2S6F4T EXPRESSION TAG SEQADV 8WZ6 HIS A 14 UNP A0A2S6F4T EXPRESSION TAG SEQRES 1 A 437 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS GLN ASP TYR SEQRES 2 A 437 LYS VAL ALA GLU ILE SER LEU ALA ASP TRP GLY ARG LYS SEQRES 3 A 437 GLU ILE ALA ILE ALA GLU THR GLU MET PRO GLY LEU MET SEQRES 4 A 437 ALA LEU ARG GLU GLU PHE SER ALA LYS LYS PRO LEU GLN SEQRES 5 A 437 GLY ALA ARG ILE ALA GLY CYS LEU HIS MET THR ILE GLN SEQRES 6 A 437 THR ALA VAL LEU ILE GLU THR LEU VAL ALA LEU GLY ALA SEQRES 7 A 437 GLU VAL ARG TRP SER SER CYS ASN ILE PHE SER THR GLN SEQRES 8 A 437 ASP HIS ALA ALA SER ALA ILE ALA ALA LYS GLY ILE PRO SEQRES 9 A 437 VAL PHE ALA TRP LYS GLY GLU THR GLU GLU GLU TYR TRP SEQRES 10 A 437 TRP CYS VAL GLU GLN THR LEU SER GLY PRO ASN GLY TRP SEQRES 11 A 437 THR PRO ASN LEU LEU LEU ASP ASP GLY GLY ASP LEU THR SEQRES 12 A 437 GLN VAL VAL HIS GLN LYS HIS PRO LYS LEU LEU THR ALA SEQRES 13 A 437 ILE LYS GLY VAL SER GLU GLU THR THR THR GLY VAL ALA SEQRES 14 A 437 ARG LEU TYR GLU MET ALA LYS HIS GLY GLN LEU LYS ILE SEQRES 15 A 437 PRO ALA ILE ASN VAL ASN ASN ALA VAL THR LYS SER LYS SEQRES 16 A 437 PHE ASP ASN LEU TYR GLY CYS ARG GLU SER LEU LEU ASP SEQRES 17 A 437 GLY LEU LYS ARG ALA THR ASP VAL MET ILE ALA GLY LYS SEQRES 18 A 437 VAL ALA LEU ILE LEU GLY TYR GLY ASP VAL GLY LYS GLY SEQRES 19 A 437 CYS ALA GLN ALA LEU ARG GLY GLN GLY ALA THR VAL LEU SEQRES 20 A 437 VAL ALA GLU ILE ASP PRO ILE CYS ALA LEU GLN ALA ALA SEQRES 21 A 437 MET GLU GLY TYR ARG VAL VAL THR LEU ASP ASP VAL ALA SEQRES 22 A 437 GLU GLN VAL ASP ILE VAL VAL THR ALA THR GLY ASN TYR SEQRES 23 A 437 HIS VAL VAL THR HIS ASP HIS MET LYS ARG MET ARG ASN SEQRES 24 A 437 GLN ALA ILE LEU CYS ASN ILE GLY HIS PHE ASP SER GLU SEQRES 25 A 437 ILE ASP ILE GLN SER LEU LYS GLN TYR GLN TRP GLU ASN SEQRES 26 A 437 ILE LYS PRO GLN VAL ASP HIS VAL ILE PHE PRO ASP GLY SEQRES 27 A 437 LYS ARG ILE ILE ILE LEU ALA GLU GLY ARG LEU VAL ASN SEQRES 28 A 437 LEU GLY CYS ALA THR GLY HIS PRO SER PHE VAL MET SER SEQRES 29 A 437 ALA SER PHE THR ASN GLN VAL LEU ALA GLN ILE GLU LEU SEQRES 30 A 437 PHE GLN ASN SER SER GLN TYR GLN ASN GLN VAL TYR VAL SEQRES 31 A 437 LEU PRO LYS VAL LEU ASP GLU LYS VAL ALA ARG LEU HIS SEQRES 32 A 437 LEU GLY ARG ILE GLY ALA LYS LEU THR GLN LEU SER ASN SEQRES 33 A 437 GLU GLN ALA ASP TYR ILE GLY VAL ASP LYS ASN GLY PRO SEQRES 34 A 437 TYR LYS PRO ASP HIS TYR ARG TYR HET NAD A 501 44 HET XI6 A 502 19 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM XI6 DZNEP HETSYN XI6 (1~{S},2~{R},5~{R})-5-(4-AZANYLIMIDAZO[4,5-C]PYRIDIN-1- HETSYN 2 XI6 YL)-3-(HYDROXYMETHYL)CYCLOPENT-3-ENE-1,2-DIOL; 3- HETSYN 3 XI6 DEAZANEPLANOCIN FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 XI6 C12 H14 N4 O3 FORMUL 4 HOH *86(H2 O) HELIX 1 AA1 GLU A 21 SER A 23 5 3 HELIX 2 AA2 LEU A 24 THR A 37 1 14 HELIX 3 AA3 MET A 39 SER A 50 1 12 HELIX 4 AA4 THR A 67 LEU A 80 1 14 HELIX 5 AA5 GLN A 95 LYS A 105 1 11 HELIX 6 AA6 THR A 116 SER A 129 1 14 HELIX 7 AA7 GLY A 130 TRP A 134 5 5 HELIX 8 AA8 GLY A 144 HIS A 154 1 11 HELIX 9 AA9 HIS A 154 ILE A 161 1 8 HELIX 10 AB1 THR A 168 HIS A 181 1 14 HELIX 11 AB2 ALA A 194 LYS A 199 1 6 HELIX 12 AB3 PHE A 200 ASP A 219 1 20 HELIX 13 AB4 GLY A 233 GLN A 246 1 14 HELIX 14 AB5 ASP A 256 GLU A 266 1 11 HELIX 15 AB6 THR A 272 ALA A 277 1 6 HELIX 16 AB7 GLU A 278 VAL A 280 5 3 HELIX 17 AB8 THR A 294 ARG A 300 1 7 HELIX 18 AB9 PHE A 313 ILE A 317 5 5 HELIX 19 AC1 ILE A 319 LYS A 323 5 5 HELIX 20 AC2 GLU A 350 ARG A 352 5 3 HELIX 21 AC3 LEU A 353 ALA A 359 1 7 HELIX 22 AC4 PRO A 363 SER A 385 1 23 HELIX 23 AC5 SER A 386 TYR A 388 5 3 HELIX 24 AC6 PRO A 396 GLY A 409 1 14 HELIX 25 AC7 ARG A 410 GLY A 412 5 3 HELIX 26 AC8 SER A 419 ILE A 426 1 8 SHEET 1 AA1 7 VAL A 109 PHE A 110 0 SHEET 2 AA1 7 GLU A 83 SER A 87 1 N TRP A 86 O PHE A 110 SHEET 3 AA1 7 ARG A 59 CYS A 63 1 N GLY A 62 O ARG A 85 SHEET 4 AA1 7 LEU A 138 ASP A 141 1 O LEU A 140 N CYS A 63 SHEET 5 AA1 7 GLY A 163 GLU A 166 1 O SER A 165 N ASP A 141 SHEET 6 AA1 7 ALA A 188 ASN A 190 1 O ILE A 189 N VAL A 164 SHEET 7 AA1 7 VAL A 392 TYR A 393 1 O TYR A 393 N ASN A 190 SHEET 1 AA2 8 ARG A 269 VAL A 270 0 SHEET 2 AA2 8 THR A 249 ALA A 253 1 N VAL A 252 O ARG A 269 SHEET 3 AA2 8 VAL A 226 LEU A 230 1 N ALA A 227 O LEU A 251 SHEET 4 AA2 8 ILE A 282 THR A 285 1 O ILE A 282 N LEU A 228 SHEET 5 AA2 8 ALA A 305 ASN A 309 1 O CYS A 308 N VAL A 283 SHEET 6 AA2 8 ARG A 344 LEU A 348 1 O ILE A 346 N LEU A 307 SHEET 7 AA2 8 VAL A 334 ILE A 338 -1 N ASP A 335 O ILE A 347 SHEET 8 AA2 8 GLN A 326 LYS A 331 -1 N GLU A 328 O HIS A 336 CISPEP 1 GLY A 432 PRO A 433 0 1.03 CRYST1 130.547 130.547 115.473 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007660 0.004423 0.000000 0.00000 SCALE2 0.000000 0.008845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008660 0.00000 CONECT 3301 3302 3303 3304 3323 CONECT 3302 3301 CONECT 3303 3301 CONECT 3304 3301 3305 CONECT 3305 3304 3306 CONECT 3306 3305 3307 3308 CONECT 3307 3306 3312 CONECT 3308 3306 3309 3310 CONECT 3309 3308 CONECT 3310 3308 3311 3312 CONECT 3311 3310 CONECT 3312 3307 3310 3313 CONECT 3313 3312 3314 3322 CONECT 3314 3313 3315 CONECT 3315 3314 3316 CONECT 3316 3315 3317 3322 CONECT 3317 3316 3318 3319 CONECT 3318 3317 CONECT 3319 3317 3320 CONECT 3320 3319 3321 CONECT 3321 3320 3322 CONECT 3322 3313 3316 3321 CONECT 3323 3301 3324 CONECT 3324 3323 3325 3326 3327 CONECT 3325 3324 CONECT 3326 3324 CONECT 3327 3324 3328 CONECT 3328 3327 3329 CONECT 3329 3328 3330 3331 CONECT 3330 3329 3335 CONECT 3331 3329 3332 3333 CONECT 3332 3331 CONECT 3333 3331 3334 3335 CONECT 3334 3333 CONECT 3335 3330 3333 3336 CONECT 3336 3335 3337 3344 CONECT 3337 3336 3338 CONECT 3338 3337 3339 3342 CONECT 3339 3338 3340 3341 CONECT 3340 3339 CONECT 3341 3339 CONECT 3342 3338 3343 CONECT 3343 3342 3344 CONECT 3344 3336 3343 CONECT 3345 3352 3353 CONECT 3346 3347 3353 3360 CONECT 3347 3346 3351 3359 CONECT 3348 3359 3360 CONECT 3349 3350 3357 3359 CONECT 3350 3349 3355 CONECT 3351 3347 3352 CONECT 3352 3345 3351 CONECT 3353 3345 3346 3361 CONECT 3354 3357 CONECT 3355 3350 3356 3358 CONECT 3356 3355 3357 3362 CONECT 3357 3349 3354 3356 CONECT 3358 3355 3363 CONECT 3359 3347 3348 3349 CONECT 3360 3346 3348 CONECT 3361 3353 CONECT 3362 3356 CONECT 3363 3358 MASTER 407 0 2 26 15 0 0 6 3448 1 63 34 END