HEADER PROTEIN BINDING 27-NOV-23 8X8A TITLE CRYSTAL STRUCTURE OF STBD1 LIR MOTIF IN COMPLEX WITH GABARAPL1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GAMMA-AMINOBUTYRIC ACID RECEPTOR-ASSOCIATED PROTEIN-LIKE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EARLY ESTROGEN-REGULATED PROTEIN,GABA(A) RECEPTOR-ASSOCIATED COMPND 5 PROTEIN-LIKE 1,GLANDULAR EPITHELIAL CELL PROTEIN 1,GEC-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: LIR MOTIF; COMPND 11 SYNONYM: GENETHONIN-1,GLYCOPHAGY CARGO RECEPTOR STBD1; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GABARAPL1, GEC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: STBD1, GENX-3414; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STBD1, LIR, GABARAPL1, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Y.C.ZHANG,L.F.PAN REVDAT 1 18-SEP-24 8X8A 0 JRNL AUTH Y.ZHANG,Y.SUN,J.SHI,P.XU,Y.WANG,J.LIU,X.GONG,Y.WANG,Y.TANG, JRNL AUTH 2 H.LIU,X.ZHOU,Z.LIN,O.BABA,T.MORITA,B.YU,L.PAN JRNL TITL DECODING THE MOLECULAR MECHANISM OF SELECTIVE AUTOPHAGY OF JRNL TITL 2 GLYCOGEN MEDIATED BY AUTOPHAGY RECEPTOR STBD1. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 17121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 39236246 JRNL DOI 10.1073/PNAS.2402817121 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC4_4035 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1000 - 3.1800 1.00 2795 154 0.1428 0.1714 REMARK 3 2 3.1700 - 2.5200 1.00 2715 135 0.1877 0.1771 REMARK 3 3 2.5200 - 2.2000 1.00 2706 162 0.1901 0.1988 REMARK 3 4 2.2000 - 2.0000 1.00 2667 144 0.1966 0.2024 REMARK 3 5 2.0000 - 1.8600 1.00 2705 121 0.1968 0.2028 REMARK 3 6 1.8600 - 1.7500 1.00 2704 128 0.1946 0.2307 REMARK 3 7 1.7500 - 1.6600 1.00 2647 145 0.1931 0.2022 REMARK 3 8 1.6600 - 1.5900 1.00 2695 157 0.1821 0.2429 REMARK 3 9 1.5900 - 1.5300 1.00 2654 148 0.2270 0.2343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.142 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1181 REMARK 3 ANGLE : 1.045 1605 REMARK 3 CHIRALITY : 0.065 160 REMARK 3 PLANARITY : 0.015 212 REMARK 3 DIHEDRAL : 5.555 164 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2643 -21.2083 -20.4093 REMARK 3 T TENSOR REMARK 3 T11: 0.3753 T22: 0.2620 REMARK 3 T33: 0.4566 T12: 0.0411 REMARK 3 T13: -0.0385 T23: -0.0308 REMARK 3 L TENSOR REMARK 3 L11: 8.3383 L22: 9.2986 REMARK 3 L33: 8.7183 L12: 2.9646 REMARK 3 L13: 5.7401 L23: 5.0881 REMARK 3 S TENSOR REMARK 3 S11: -0.4181 S12: -0.1321 S13: 1.0780 REMARK 3 S21: -0.0678 S22: -0.1688 S23: 0.2682 REMARK 3 S31: -1.2347 S32: -0.2574 S33: 0.7242 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5563 -30.1839 -18.7036 REMARK 3 T TENSOR REMARK 3 T11: 0.2405 T22: 0.2450 REMARK 3 T33: 0.1771 T12: 0.0204 REMARK 3 T13: 0.0158 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 7.4647 L22: 1.4856 REMARK 3 L33: 2.8046 L12: -0.7561 REMARK 3 L13: 3.0665 L23: -0.8412 REMARK 3 S TENSOR REMARK 3 S11: -0.2279 S12: -0.6137 S13: 0.4183 REMARK 3 S21: 0.1312 S22: 0.0949 S23: 0.0172 REMARK 3 S31: -0.3339 S32: -0.2697 S33: 0.1271 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2286 -39.2296 -23.1962 REMARK 3 T TENSOR REMARK 3 T11: 0.2473 T22: 0.2243 REMARK 3 T33: 0.2535 T12: -0.0078 REMARK 3 T13: 0.0226 T23: 0.0524 REMARK 3 L TENSOR REMARK 3 L11: 7.0242 L22: 1.3350 REMARK 3 L33: 2.5948 L12: -0.0370 REMARK 3 L13: 2.4959 L23: 0.3062 REMARK 3 S TENSOR REMARK 3 S11: 0.0922 S12: -0.1139 S13: -0.4686 REMARK 3 S21: 0.0864 S22: -0.0327 S23: 0.0375 REMARK 3 S31: 0.0301 S32: -0.1151 S33: -0.0402 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8091 -32.3089 -29.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.1999 T22: 0.2527 REMARK 3 T33: 0.2215 T12: 0.0304 REMARK 3 T13: 0.0244 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 6.4599 L22: 3.1319 REMARK 3 L33: 5.7891 L12: 1.7582 REMARK 3 L13: 0.5792 L23: -1.1405 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.2844 S13: 0.4235 REMARK 3 S21: 0.1145 S22: 0.1457 S23: 0.4105 REMARK 3 S31: -0.0464 S32: -0.8505 S33: -0.1581 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.5390 -31.4221 -30.1308 REMARK 3 T TENSOR REMARK 3 T11: 0.2592 T22: 0.2311 REMARK 3 T33: 0.2210 T12: -0.0142 REMARK 3 T13: 0.0166 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 6.6879 L22: 0.5799 REMARK 3 L33: 2.1364 L12: 0.3453 REMARK 3 L13: 2.4091 L23: 0.3066 REMARK 3 S TENSOR REMARK 3 S11: -0.1323 S12: 0.4029 S13: 0.2952 REMARK 3 S21: -0.0416 S22: 0.0001 S23: -0.1074 REMARK 3 S31: -0.1706 S32: 0.1675 S33: 0.1365 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9960 -41.0664 -17.2548 REMARK 3 T TENSOR REMARK 3 T11: 0.3195 T22: 0.4131 REMARK 3 T33: 0.4129 T12: -0.0111 REMARK 3 T13: 0.0353 T23: 0.0530 REMARK 3 L TENSOR REMARK 3 L11: 9.3154 L22: 2.9780 REMARK 3 L33: 9.7555 L12: 4.7361 REMARK 3 L13: 6.3590 L23: 2.9565 REMARK 3 S TENSOR REMARK 3 S11: 0.6670 S12: -0.7356 S13: -0.8597 REMARK 3 S21: 0.1342 S22: -0.6762 S23: 0.3302 REMARK 3 S31: 0.6484 S32: -1.3756 S33: -0.0526 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8X8A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042870. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROCESS REMARK 200 DATA SCALING SOFTWARE : AUTOPROCESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25598 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.529 REMARK 200 RESOLUTION RANGE LOW (A) : 50.198 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 38.80 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5LXI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% W/V PENTAERYTHRITOL PROPOXYLATE REMARK 280 (5/4 PO/OH), 0.1 M SODIUM ACETATE PH 4.6, 0.05 M MAGNESIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.19750 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 50.19750 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 50.19750 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 50.19750 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 50.19750 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 50.19750 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 50.19750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 50.19750 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 50.19750 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 50.19750 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 50.19750 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 50.19750 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 50.19750 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 50.19750 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 50.19750 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 50.19750 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 50.19750 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 50.19750 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 50.19750 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 50.19750 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 50.19750 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 50.19750 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 50.19750 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 50.19750 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 50.19750 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 50.19750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 196 REMARK 465 PRO B 197 REMARK 465 GLY B 198 REMARK 465 SER B 199 REMARK 465 HIS B 200 REMARK 465 SER B 214 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 54 O HOH A 201 1.94 REMARK 500 NZ LYS A 46 OE1 GLU B 201 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 38 13.65 59.32 REMARK 500 SER B 212 -7.04 -151.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 8X8A A 1 117 UNP Q9H0R8 GBRL1_HUMAN 1 117 DBREF 8X8A B 200 210 UNP O95210 STBD1_HUMAN 200 210 SEQADV 8X8A GLY B 196 UNP O95210 EXPRESSION TAG SEQADV 8X8A PRO B 197 UNP O95210 EXPRESSION TAG SEQADV 8X8A GLY B 198 UNP O95210 EXPRESSION TAG SEQADV 8X8A SER B 199 UNP O95210 EXPRESSION TAG SEQADV 8X8A GLY B 211 UNP O95210 EXPRESSION TAG SEQADV 8X8A SER B 212 UNP O95210 EXPRESSION TAG SEQADV 8X8A GLY B 213 UNP O95210 EXPRESSION TAG SEQADV 8X8A SER B 214 UNP O95210 EXPRESSION TAG SEQRES 1 A 117 MET LYS PHE GLN TYR LYS GLU ASP HIS PRO PHE GLU TYR SEQRES 2 A 117 ARG LYS LYS GLU GLY GLU LYS ILE ARG LYS LYS TYR PRO SEQRES 3 A 117 ASP ARG VAL PRO VAL ILE VAL GLU LYS ALA PRO LYS ALA SEQRES 4 A 117 ARG VAL PRO ASP LEU ASP LYS ARG LYS TYR LEU VAL PRO SEQRES 5 A 117 SER ASP LEU THR VAL GLY GLN PHE TYR PHE LEU ILE ARG SEQRES 6 A 117 LYS ARG ILE HIS LEU ARG PRO GLU ASP ALA LEU PHE PHE SEQRES 7 A 117 PHE VAL ASN ASN THR ILE PRO PRO THR SER ALA THR MET SEQRES 8 A 117 GLY GLN LEU TYR GLU ASP ASN HIS GLU GLU ASP TYR PHE SEQRES 9 A 117 LEU TYR VAL ALA TYR SER ASP GLU SER VAL TYR GLY LYS SEQRES 1 B 19 GLY PRO GLY SER HIS GLU GLU TRP GLU MET VAL PRO ARG SEQRES 2 B 19 HIS SER GLY SER GLY SER FORMUL 3 HOH *144(H2 O) HELIX 1 AA1 PHE A 3 HIS A 9 1 7 HELIX 2 AA2 PRO A 10 TYR A 25 1 16 HELIX 3 AA3 THR A 56 ILE A 68 1 13 HELIX 4 AA4 THR A 90 HIS A 99 1 10 SHEET 1 AA1 5 PHE A 77 PHE A 79 0 SHEET 2 AA1 5 LEU A 105 SER A 110 -1 O SER A 110 N PHE A 77 SHEET 3 AA1 5 ARG A 28 LYS A 35 1 N ILE A 32 O LEU A 105 SHEET 4 AA1 5 LYS A 48 PRO A 52 -1 O TYR A 49 N VAL A 31 SHEET 5 AA1 5 GLU B 204 MET B 205 1 O GLU B 204 N LEU A 50 CRYST1 100.395 100.395 100.395 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009961 0.00000