HEADER VIRAL PROTEIN 29-NOV-23 8X8V TITLE CRYSTAL STRUCTURE OF CYPOVIRUS POLYHEDRA MUTANT FUSED WITH C-MYC TITLE 2 FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYHEDRIN,MYC PROTO-ONCOGENE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: C-POLYHEDRIN,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 39, COMPND 5 BHLHE39,PROTO-ONCOGENE C-MYC,TRANSCRIPTION FACTOR P64; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI CYPOVIRUS 1, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 110829, 9606; SOURCE 5 GENE: MYC, BHLHE39; SOURCE 6 EXPRESSION_SYSTEM: TRITICUM AESTIVUM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4565 KEYWDS POLYHEDRA, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.KOJIMA,T.UENO,S.ABE,K.HIRATA REVDAT 2 03-JUL-24 8X8V 1 JRNL REVDAT 1 05-JUN-24 8X8V 0 JRNL AUTH M.KOJIMA,S.ABE,T.FURUTA,K.HIRATA,X.YAO,A.KOBAYASHI, JRNL AUTH 2 R.KOBAYASHI,T.UENO JRNL TITL HIGH-THROUGHPUT STRUCTURE DETERMINATION OF AN INTRINSICALLY JRNL TITL 2 DISORDERED PROTEIN USING CELL-FREE PROTEIN CRYSTALLIZATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 52121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38861600 JRNL DOI 10.1073/PNAS.2322452121 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 13784 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1381 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6900 - 4.3100 1.00 1297 147 0.1709 0.2276 REMARK 3 2 4.3000 - 3.4200 1.00 1247 140 0.1723 0.2356 REMARK 3 3 3.4200 - 2.9900 1.00 1245 140 0.1972 0.2280 REMARK 3 4 2.9900 - 2.7100 1.00 1238 137 0.2160 0.2741 REMARK 3 5 2.7100 - 2.5200 1.00 1233 131 0.2464 0.2483 REMARK 3 6 2.5200 - 2.3700 1.00 1237 133 0.2011 0.2664 REMARK 3 7 2.3700 - 2.2500 1.00 1220 139 0.2374 0.2924 REMARK 3 8 2.2500 - 2.1600 1.00 1213 140 0.2181 0.2841 REMARK 3 9 2.1500 - 2.0700 1.00 1244 138 0.2302 0.2877 REMARK 3 10 2.0700 - 2.0000 1.00 1229 136 0.2561 0.3413 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.259 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.451 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1533 REMARK 3 ANGLE : 0.824 2081 REMARK 3 CHIRALITY : 0.057 226 REMARK 3 PLANARITY : 0.006 269 REMARK 3 DIHEDRAL : 5.558 209 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8X8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13787 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 29.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CELL-FREE CRYSTALLIZATION, SMALL REMARK 280 TUBES, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.29500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 53.29500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 53.29500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 53.29500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 53.29500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 53.29500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 53.29500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 53.29500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 53.29500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 53.29500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 53.29500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 53.29500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 53.29500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 53.29500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 53.29500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 53.29500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 53.29500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 53.29500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 53.29500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 53.29500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 53.29500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 53.29500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 53.29500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 53.29500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 53.29500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 53.29500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 VAL A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 SER A 8 REMARK 465 ASN A 9 REMARK 465 ARG A 10 REMARK 465 GLU A 70 REMARK 465 TYR A 71 REMARK 465 ARG A 72 REMARK 465 GLU A 73 REMARK 465 GLY A 74 REMARK 465 GLN A 75 REMARK 465 HIS A 76 REMARK 465 ASN A 77 REMARK 465 ASP A 78 REMARK 465 SER A 79 REMARK 465 TYR A 80 REMARK 465 ASP A 81 REMARK 465 GLU A 82 REMARK 465 TYR A 83 REMARK 465 GLU A 84 REMARK 465 VAL A 85 REMARK 465 ASN A 86 REMARK 465 GLN A 87 REMARK 465 SER A 88 REMARK 465 ILE A 89 REMARK 465 TYR A 90 REMARK 465 TYR A 91 REMARK 465 PRO A 92 REMARK 465 ASN A 93 REMARK 465 GLY A 94 REMARK 465 GLY A 95 REMARK 465 ASP A 96 REMARK 465 ALA A 97 REMARK 465 ARG A 98 REMARK 465 LYS A 99 REMARK 465 PHE A 100 REMARK 465 HIS A 101 REMARK 465 SER A 102 REMARK 465 ASN A 103 REMARK 465 ALA A 129 REMARK 465 VAL A 130 REMARK 465 SER A 131 REMARK 465 VAL A 132 REMARK 465 PRO A 133 REMARK 465 ASP A 134 REMARK 465 SER A 193 REMARK 465 ALA A 194 REMARK 465 SER A 245 REMARK 465 ASN A 246 REMARK 465 ARG A 247 REMARK 465 GLN A 248 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 15 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 LYS A 69 CG CD CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 ARG A 107 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 HIS A 170 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 TYR A 172 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TRP A 215 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 215 CZ3 CH2 REMARK 470 LEU A 244 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -50.84 73.78 REMARK 500 LEU A 68 -162.52 -127.95 REMARK 500 GLU A 171 22.88 -75.57 REMARK 500 VAL A 191 97.30 -68.22 REMARK 500 TYR A 224 -51.66 -120.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8J2Q RELATED DB: PDB REMARK 900 SAME CIATION DBREF 8X8V A 1 14 UNP P11041 PYHD_CPVBM 1 14 DBREF 8X8V A 15 25 UNP P01106 MYC_HUMAN 417 427 DBREF 8X8V A 26 248 UNP P11041 PYHD_CPVBM 26 248 SEQADV 8X8V GLN A 151 UNP P11041 ARG 151 ENGINEERED MUTATION SEQRES 1 A 248 MET ALA ASP VAL ALA GLY THR SER ASN ARG ASP PHE ARG SEQRES 2 A 248 GLY TYR ILE LEU SER VAL GLN ALA GLU GLU GLN LYS ASN SEQRES 3 A 248 TYR ASN ASN SER LEU ASN GLY GLU VAL SER VAL TRP VAL SEQRES 4 A 248 TYR ALA TYR TYR SER ASP GLY SER VAL LEU VAL ILE ASN SEQRES 5 A 248 LYS ASN SER GLN TYR LYS VAL GLY ILE SER GLU THR PHE SEQRES 6 A 248 LYS ALA LEU LYS GLU TYR ARG GLU GLY GLN HIS ASN ASP SEQRES 7 A 248 SER TYR ASP GLU TYR GLU VAL ASN GLN SER ILE TYR TYR SEQRES 8 A 248 PRO ASN GLY GLY ASP ALA ARG LYS PHE HIS SER ASN ALA SEQRES 9 A 248 LYS PRO ARG ALA ILE GLN ILE ILE PHE SER PRO SER VAL SEQRES 10 A 248 ASN VAL ARG THR ILE LYS MET ALA LYS GLY ASN ALA VAL SEQRES 11 A 248 SER VAL PRO ASP GLU TYR LEU GLN ARG SER HIS PRO TRP SEQRES 12 A 248 GLU ALA THR GLY ILE LYS TYR GLN LYS ILE LYS ARG ASP SEQRES 13 A 248 GLY GLU ILE VAL GLY TYR SER HIS TYR PHE GLU LEU PRO SEQRES 14 A 248 HIS GLU TYR ASN SER ILE SER LEU ALA VAL SER GLY VAL SEQRES 15 A 248 HIS LYS ASN PRO SER SER TYR ASN VAL GLY SER ALA HIS SEQRES 16 A 248 ASN VAL MET ASP VAL PHE GLN SER CYS ASP LEU ALA LEU SEQRES 17 A 248 ARG PHE CYS ASN ARG TYR TRP ALA GLU LEU GLU LEU VAL SEQRES 18 A 248 ASN HIS TYR ILE SER PRO ASN ALA TYR PRO TYR LEU ASP SEQRES 19 A 248 ILE ASN ASN HIS SER TYR GLY VAL ALA LEU SER ASN ARG SEQRES 20 A 248 GLN FORMUL 2 HOH *47(H2 O) HELIX 1 AA1 PHE A 12 SER A 30 1 19 HELIX 2 AA2 ASN A 118 ILE A 122 5 5 HELIX 3 AA3 TYR A 136 SER A 140 5 5 HELIX 4 AA4 THR A 146 TYR A 150 5 5 HELIX 5 AA5 ASN A 196 ALA A 207 1 12 HELIX 6 AA6 ALA A 216 TYR A 224 1 9 SHEET 1 AA1 6 GLN A 151 ARG A 155 0 SHEET 2 AA1 6 GLU A 158 GLU A 167 -1 O GLY A 161 N ILE A 153 SHEET 3 AA1 6 PRO A 106 PHE A 113 -1 N ILE A 109 O PHE A 166 SHEET 4 AA1 6 GLU A 34 TYR A 43 -1 N TYR A 42 O ARG A 107 SHEET 5 AA1 6 VAL A 48 GLN A 56 -1 O SER A 55 N VAL A 35 SHEET 6 AA1 6 LEU A 208 TYR A 214 -1 O PHE A 210 N ASN A 52 SHEET 1 AA2 3 LYS A 58 LYS A 66 0 SHEET 2 AA2 3 SER A 174 VAL A 182 -1 O ILE A 175 N PHE A 65 SHEET 3 AA2 3 LYS A 123 GLY A 127 -1 N ALA A 125 O ALA A 178 SHEET 1 AA3 2 TYR A 232 LEU A 233 0 SHEET 2 AA3 2 SER A 239 TYR A 240 -1 O TYR A 240 N TYR A 232 CRYST1 106.590 106.590 106.590 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009382 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009382 0.00000