HEADER DNA BINDING PROTEIN 05-DEC-23 8XAS TITLE CRYSTAL STRUCTURE OF ATARR1-DBD IN COMPLEX WITH A DNA FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO-COMPONENT RESPONSE REGULATOR ARR1; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (50-MER); COMPND 7 CHAIN: X, Y; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (50-MER); COMPND 11 CHAIN: G, H; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: ARR1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS CYTOKININ, PHOSPHORELAY, B-ARR, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.X.LI,C.M.ZHOU,P.ZHANG,J.W.WANG REVDAT 2 23-OCT-24 8XAS 1 REMARK REVDAT 1 24-JAN-24 8XAS 0 JRNL AUTH C.M.ZHOU,J.X.LI,T.Q.ZHANG,Z.G.XU,M.L.MA,P.ZHANG,J.W.WANG JRNL TITL THE STRUCTURE OF B-ARR REVEALS THE MOLECULAR BASIS OF JRNL TITL 2 TRANSCRIPTIONAL ACTIVATION BY CYTOKININ. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 35121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38198526 JRNL DOI 10.1073/PNAS.2319335121 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.2 REMARK 3 NUMBER OF REFLECTIONS : 62499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.480 REMARK 3 FREE R VALUE TEST SET COUNT : 3424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.2340 - 6.7559 0.97 2932 168 0.1836 0.2239 REMARK 3 2 6.7559 - 5.3671 1.00 3040 176 0.1873 0.2458 REMARK 3 3 5.3671 - 4.6900 1.00 3003 181 0.1620 0.1993 REMARK 3 4 4.6900 - 4.2618 1.00 3054 180 0.1433 0.2111 REMARK 3 5 4.2618 - 3.9567 1.00 3021 169 0.1580 0.1789 REMARK 3 6 3.9567 - 3.7236 0.99 3000 161 0.1754 0.2255 REMARK 3 7 3.7236 - 3.5373 0.99 3022 174 0.1816 0.2190 REMARK 3 8 3.5373 - 3.3834 1.00 3000 189 0.2002 0.2249 REMARK 3 9 3.3834 - 3.2532 1.00 3054 172 0.1973 0.2973 REMARK 3 10 3.2532 - 3.1410 0.97 2959 164 0.2117 0.2493 REMARK 3 11 3.1410 - 3.0429 0.96 2904 163 0.2208 0.2563 REMARK 3 12 3.0429 - 2.9559 0.93 2803 166 0.2313 0.2937 REMARK 3 13 2.9559 - 2.8781 0.91 2768 180 0.2387 0.2852 REMARK 3 14 2.8781 - 2.8079 0.86 2614 144 0.2515 0.2865 REMARK 3 15 2.8079 - 2.7441 0.78 2342 146 0.2505 0.2505 REMARK 3 16 2.7441 - 2.6857 0.77 2365 124 0.2342 0.2931 REMARK 3 17 2.6857 - 2.6320 0.71 2119 134 0.2299 0.2831 REMARK 3 18 2.6320 - 2.5824 0.65 1971 96 0.2344 0.2879 REMARK 3 19 2.5824 - 2.5362 0.60 1781 121 0.2417 0.2632 REMARK 3 20 2.5362 - 2.4933 0.55 1729 93 0.2604 0.2637 REMARK 3 21 2.4933 - 2.4531 0.52 1555 82 0.2502 0.3328 REMARK 3 22 2.4531 - 2.4153 0.47 1438 83 0.2683 0.3139 REMARK 3 23 2.4153 - 2.3798 0.45 1356 80 0.2772 0.3098 REMARK 3 24 2.3798 - 2.3463 0.41 1245 78 0.2906 0.3724 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5311 REMARK 3 ANGLE : 1.281 7604 REMARK 3 CHIRALITY : 0.361 868 REMARK 3 PLANARITY : 0.008 609 REMARK 3 DIHEDRAL : 30.862 2152 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -17.2213 -20.2224 6.7972 REMARK 3 T TENSOR REMARK 3 T11: 0.1844 T22: 0.2295 REMARK 3 T33: 0.1999 T12: 0.0009 REMARK 3 T13: -0.0185 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 0.4487 L22: 1.0197 REMARK 3 L33: 0.1450 L12: -0.1170 REMARK 3 L13: -0.1160 L23: 0.1579 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: -0.0129 S13: -0.0175 REMARK 3 S21: 0.0328 S22: -0.0290 S23: -0.0084 REMARK 3 S31: -0.0107 S32: -0.0099 S33: 0.0127 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043031. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-FEB-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62499 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.346 REMARK 200 RESOLUTION RANGE LOW (A) : 38.234 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH 4.6, 30% (W/V) PEG MONOMETHYL ETHER 2000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.91550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.25050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.55600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.25050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.91550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.55600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, X, G, Y, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 ASP A 7 REMARK 465 LYS A 8 REMARK 465 ASP A 9 REMARK 465 GLU A 10 REMARK 465 ASP A 11 REMARK 465 ALA A 12 REMARK 465 SER A 13 REMARK 465 ASN A 14 REMARK 465 LEU A 15 REMARK 465 LYS A 16 REMARK 465 GLY A 76 REMARK 465 GLY A 77 REMARK 465 VAL A 78 REMARK 465 SER A 79 REMARK 465 GLN A 80 REMARK 465 HIS A 81 REMARK 465 GLY B 1 REMARK 465 GLU B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 GLY B 5 REMARK 465 ASP B 6 REMARK 465 ASP B 7 REMARK 465 LYS B 8 REMARK 465 ASP B 9 REMARK 465 GLU B 10 REMARK 465 ASP B 11 REMARK 465 ALA B 12 REMARK 465 SER B 13 REMARK 465 ASN B 14 REMARK 465 LEU B 15 REMARK 465 LYS B 16 REMARK 465 SER B 79 REMARK 465 GLN B 80 REMARK 465 HIS B 81 REMARK 465 GLY C 1 REMARK 465 GLU C 2 REMARK 465 GLU C 3 REMARK 465 GLN C 4 REMARK 465 GLY C 5 REMARK 465 ASP C 6 REMARK 465 ASP C 7 REMARK 465 LYS C 8 REMARK 465 ASP C 9 REMARK 465 GLU C 10 REMARK 465 ASP C 11 REMARK 465 ALA C 12 REMARK 465 SER C 13 REMARK 465 ASN C 14 REMARK 465 LEU C 15 REMARK 465 LYS C 16 REMARK 465 GLN C 80 REMARK 465 HIS C 81 REMARK 465 GLY D 1 REMARK 465 GLU D 2 REMARK 465 GLU D 3 REMARK 465 GLN D 4 REMARK 465 GLY D 5 REMARK 465 ASP D 6 REMARK 465 ASP D 7 REMARK 465 LYS D 8 REMARK 465 ASP D 9 REMARK 465 GLU D 10 REMARK 465 ASP D 11 REMARK 465 ALA D 12 REMARK 465 SER D 13 REMARK 465 ASN D 14 REMARK 465 LEU D 15 REMARK 465 LYS D 16 REMARK 465 GLY D 77 REMARK 465 VAL D 78 REMARK 465 SER D 79 REMARK 465 GLN D 80 REMARK 465 HIS D 81 REMARK 465 GLY E 1 REMARK 465 GLU E 2 REMARK 465 GLU E 3 REMARK 465 GLN E 4 REMARK 465 GLY E 5 REMARK 465 ASP E 6 REMARK 465 ASP E 7 REMARK 465 LYS E 8 REMARK 465 ASP E 9 REMARK 465 GLU E 10 REMARK 465 ASP E 11 REMARK 465 ALA E 12 REMARK 465 SER E 13 REMARK 465 ASN E 14 REMARK 465 LEU E 15 REMARK 465 LYS E 16 REMARK 465 GLY E 76 REMARK 465 GLY E 77 REMARK 465 VAL E 78 REMARK 465 SER E 79 REMARK 465 GLN E 80 REMARK 465 HIS E 81 REMARK 465 GLY F 1 REMARK 465 GLU F 2 REMARK 465 GLU F 3 REMARK 465 GLN F 4 REMARK 465 GLY F 5 REMARK 465 ASP F 6 REMARK 465 ASP F 7 REMARK 465 LYS F 8 REMARK 465 ASP F 9 REMARK 465 GLU F 10 REMARK 465 ASP F 11 REMARK 465 ALA F 12 REMARK 465 SER F 13 REMARK 465 ASN F 14 REMARK 465 LEU F 15 REMARK 465 VAL F 78 REMARK 465 SER F 79 REMARK 465 GLN F 80 REMARK 465 HIS F 81 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 DC Y 25 N2 DG H 55 1.68 REMARK 500 OP2 DT X 10 O HOH X 101 1.83 REMARK 500 OP2 DT X 20 O HOH X 102 1.88 REMARK 500 O HOH H 131 O HOH H 133 1.91 REMARK 500 O HOH D 112 O HOH D 114 1.91 REMARK 500 O HOH A 121 O HOH A 125 1.91 REMARK 500 O HOH F 122 O HOH F 124 1.93 REMARK 500 O HOH X 130 O HOH X 136 1.94 REMARK 500 O HOH D 116 O HOH X 120 2.00 REMARK 500 O HOH X 124 O HOH X 135 2.05 REMARK 500 OG SER C 63 O HOH C 101 2.07 REMARK 500 O HOH A 120 O HOH Y 109 2.07 REMARK 500 O HOH A 109 O HOH H 128 2.09 REMARK 500 O SER C 79 O HOH C 102 2.11 REMARK 500 O HOH F 123 O HOH Y 111 2.11 REMARK 500 O HOH E 119 O HOH H 118 2.12 REMARK 500 OP2 DC X 24 O HOH X 103 2.12 REMARK 500 O HOH C 103 O HOH X 121 2.12 REMARK 500 NH1 ARG D 73 O HOH D 101 2.13 REMARK 500 O HOH B 110 O HOH X 115 2.13 REMARK 500 O HOH F 120 O HOH Y 112 2.15 REMARK 500 OP2 DG H 66 O HOH H 101 2.17 REMARK 500 NE ARG D 19 O HOH D 102 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 119 O HOH H 135 2454 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT X 15 O3' DT X 15 C3' -0.048 REMARK 500 DA G 65 O3' DA G 65 C3' -0.037 REMARK 500 DT Y 15 O3' DT Y 15 C3' -0.048 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT G 72 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN F 52 56.21 38.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU E 40 LYS E 41 111.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 135 DISTANCE = 5.88 ANGSTROMS DBREF 8XAS A 1 81 UNP Q940D0 ARR1_ARATH 221 301 DBREF 8XAS B 1 81 UNP Q940D0 ARR1_ARATH 221 301 DBREF 8XAS C 1 81 UNP Q940D0 ARR1_ARATH 221 301 DBREF 8XAS D 1 81 UNP Q940D0 ARR1_ARATH 221 301 DBREF 8XAS E 1 81 UNP Q940D0 ARR1_ARATH 221 301 DBREF 8XAS F 1 81 UNP Q940D0 ARR1_ARATH 221 301 DBREF 8XAS X 1 25 PDB 8XAS 8XAS 1 25 DBREF 8XAS G 55 79 PDB 8XAS 8XAS 55 79 DBREF 8XAS Y 1 25 PDB 8XAS 8XAS 1 25 DBREF 8XAS H 55 79 PDB 8XAS 8XAS 55 79 SEQRES 1 A 81 GLY GLU GLU GLN GLY ASP ASP LYS ASP GLU ASP ALA SER SEQRES 2 A 81 ASN LEU LYS LYS PRO ARG VAL VAL TRP SER VAL GLU LEU SEQRES 3 A 81 HIS GLN GLN PHE VAL ALA ALA VAL ASN GLN LEU GLY VAL SEQRES 4 A 81 GLU LYS ALA VAL PRO LYS LYS ILE LEU GLU LEU MSE ASN SEQRES 5 A 81 VAL PRO GLY LEU THR ARG GLU ASN VAL ALA SER HIS LEU SEQRES 6 A 81 GLN LYS TYR ARG ILE TYR LEU ARG ARG LEU GLY GLY VAL SEQRES 7 A 81 SER GLN HIS SEQRES 1 B 81 GLY GLU GLU GLN GLY ASP ASP LYS ASP GLU ASP ALA SER SEQRES 2 B 81 ASN LEU LYS LYS PRO ARG VAL VAL TRP SER VAL GLU LEU SEQRES 3 B 81 HIS GLN GLN PHE VAL ALA ALA VAL ASN GLN LEU GLY VAL SEQRES 4 B 81 GLU LYS ALA VAL PRO LYS LYS ILE LEU GLU LEU MSE ASN SEQRES 5 B 81 VAL PRO GLY LEU THR ARG GLU ASN VAL ALA SER HIS LEU SEQRES 6 B 81 GLN LYS TYR ARG ILE TYR LEU ARG ARG LEU GLY GLY VAL SEQRES 7 B 81 SER GLN HIS SEQRES 1 C 81 GLY GLU GLU GLN GLY ASP ASP LYS ASP GLU ASP ALA SER SEQRES 2 C 81 ASN LEU LYS LYS PRO ARG VAL VAL TRP SER VAL GLU LEU SEQRES 3 C 81 HIS GLN GLN PHE VAL ALA ALA VAL ASN GLN LEU GLY VAL SEQRES 4 C 81 GLU LYS ALA VAL PRO LYS LYS ILE LEU GLU LEU MSE ASN SEQRES 5 C 81 VAL PRO GLY LEU THR ARG GLU ASN VAL ALA SER HIS LEU SEQRES 6 C 81 GLN LYS TYR ARG ILE TYR LEU ARG ARG LEU GLY GLY VAL SEQRES 7 C 81 SER GLN HIS SEQRES 1 D 81 GLY GLU GLU GLN GLY ASP ASP LYS ASP GLU ASP ALA SER SEQRES 2 D 81 ASN LEU LYS LYS PRO ARG VAL VAL TRP SER VAL GLU LEU SEQRES 3 D 81 HIS GLN GLN PHE VAL ALA ALA VAL ASN GLN LEU GLY VAL SEQRES 4 D 81 GLU LYS ALA VAL PRO LYS LYS ILE LEU GLU LEU MSE ASN SEQRES 5 D 81 VAL PRO GLY LEU THR ARG GLU ASN VAL ALA SER HIS LEU SEQRES 6 D 81 GLN LYS TYR ARG ILE TYR LEU ARG ARG LEU GLY GLY VAL SEQRES 7 D 81 SER GLN HIS SEQRES 1 E 81 GLY GLU GLU GLN GLY ASP ASP LYS ASP GLU ASP ALA SER SEQRES 2 E 81 ASN LEU LYS LYS PRO ARG VAL VAL TRP SER VAL GLU LEU SEQRES 3 E 81 HIS GLN GLN PHE VAL ALA ALA VAL ASN GLN LEU GLY VAL SEQRES 4 E 81 GLU LYS ALA VAL PRO LYS LYS ILE LEU GLU LEU MSE ASN SEQRES 5 E 81 VAL PRO GLY LEU THR ARG GLU ASN VAL ALA SER HIS LEU SEQRES 6 E 81 GLN LYS TYR ARG ILE TYR LEU ARG ARG LEU GLY GLY VAL SEQRES 7 E 81 SER GLN HIS SEQRES 1 F 81 GLY GLU GLU GLN GLY ASP ASP LYS ASP GLU ASP ALA SER SEQRES 2 F 81 ASN LEU LYS LYS PRO ARG VAL VAL TRP SER VAL GLU LEU SEQRES 3 F 81 HIS GLN GLN PHE VAL ALA ALA VAL ASN GLN LEU GLY VAL SEQRES 4 F 81 GLU LYS ALA VAL PRO LYS LYS ILE LEU GLU LEU MSE ASN SEQRES 5 F 81 VAL PRO GLY LEU THR ARG GLU ASN VAL ALA SER HIS LEU SEQRES 6 F 81 GLN LYS TYR ARG ILE TYR LEU ARG ARG LEU GLY GLY VAL SEQRES 7 F 81 SER GLN HIS SEQRES 1 X 25 DA DA DT DC DC DA DG DA DT DT DA DA DT SEQRES 2 X 25 DC DT DA DA DT DC DT DA DA DT DC DC SEQRES 1 G 25 DG DG DA DT DT DA DG DA DT DT DA DG DA SEQRES 2 G 25 DT DT DA DA DT DC DT DG DG DA DT DT SEQRES 1 Y 25 DA DA DT DC DC DA DG DA DT DT DA DA DT SEQRES 2 Y 25 DC DT DA DA DT DC DT DA DA DT DC DC SEQRES 1 H 25 DG DG DA DT DT DA DG DA DT DT DA DG DA SEQRES 2 H 25 DT DT DA DA DT DC DT DG DG DA DT DT MODRES 8XAS MSE A 51 MET MODIFIED RESIDUE MODRES 8XAS MSE B 51 MET MODIFIED RESIDUE MODRES 8XAS MSE C 51 MET MODIFIED RESIDUE MODRES 8XAS MSE D 51 MET MODIFIED RESIDUE MODRES 8XAS MSE E 51 MET MODIFIED RESIDUE MODRES 8XAS MSE F 51 MET MODIFIED RESIDUE HET MSE A 51 8 HET MSE B 51 8 HET MSE C 51 8 HET MSE D 51 8 HET MSE E 51 8 HET MSE F 51 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 11 HOH *274(H2 O) HELIX 1 AA1 SER A 23 GLY A 38 1 16 HELIX 2 AA2 VAL A 43 ASN A 52 1 10 HELIX 3 AA3 THR A 57 ARG A 74 1 18 HELIX 4 AA4 SER B 23 GLY B 38 1 16 HELIX 5 AA5 VAL B 43 ASN B 52 1 10 HELIX 6 AA6 THR B 57 GLY B 76 1 20 HELIX 7 AA7 SER C 23 GLY C 38 1 16 HELIX 8 AA8 VAL C 43 ASN C 52 1 10 HELIX 9 AA9 THR C 57 GLY C 76 1 20 HELIX 10 AB1 SER D 23 GLY D 38 1 16 HELIX 11 AB2 VAL D 43 ASN D 52 1 10 HELIX 12 AB3 THR D 57 GLY D 76 1 20 HELIX 13 AB4 SER E 23 GLY E 38 1 16 HELIX 14 AB5 VAL E 43 ASN E 52 1 10 HELIX 15 AB6 THR E 57 ARG E 74 1 18 HELIX 16 AB7 SER F 23 GLY F 38 1 16 HELIX 17 AB8 VAL F 43 ASN F 52 1 10 HELIX 18 AB9 THR F 57 GLY F 77 1 21 LINK C LEU A 50 N MSE A 51 1555 1555 1.32 LINK C MSE A 51 N ASN A 52 1555 1555 1.32 LINK C LEU B 50 N MSE B 51 1555 1555 1.31 LINK C MSE B 51 N ASN B 52 1555 1555 1.33 LINK C LEU C 50 N MSE C 51 1555 1555 1.33 LINK C MSE C 51 N ASN C 52 1555 1555 1.33 LINK C LEU D 50 N MSE D 51 1555 1555 1.33 LINK C MSE D 51 N ASN D 52 1555 1555 1.33 LINK C LEU E 50 N MSE E 51 1555 1555 1.31 LINK C MSE E 51 N ASN E 52 1555 1555 1.31 LINK C LEU F 50 N MSE F 51 1555 1555 1.32 LINK C MSE F 51 N ASN F 52 1555 1555 1.31 CISPEP 1 GLY B 77 VAL B 78 0 -28.45 CISPEP 2 VAL E 39 GLU E 40 0 -20.68 CRYST1 73.831 79.112 162.501 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013544 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012640 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006154 0.00000 CONECT 267 273 CONECT 273 267 274 CONECT 274 273 275 277 CONECT 275 274 276 281 CONECT 276 275 CONECT 277 274 278 CONECT 278 277 279 CONECT 279 278 280 CONECT 280 279 CONECT 281 275 CONECT 752 758 CONECT 758 752 759 CONECT 759 758 760 762 CONECT 760 759 761 766 CONECT 761 760 CONECT 762 759 763 CONECT 763 762 764 CONECT 764 763 765 CONECT 765 764 CONECT 766 760 CONECT 1252 1258 CONECT 1258 1252 1259 CONECT 1259 1258 1260 1262 CONECT 1260 1259 1261 1266 CONECT 1261 1260 CONECT 1262 1259 1263 CONECT 1263 1262 1264 CONECT 1264 1263 1265 CONECT 1265 1264 CONECT 1266 1260 CONECT 1758 1764 CONECT 1764 1758 1765 CONECT 1765 1764 1766 1768 CONECT 1766 1765 1767 1772 CONECT 1767 1766 CONECT 1768 1765 1769 CONECT 1769 1768 1770 CONECT 1770 1769 1771 CONECT 1771 1770 CONECT 1772 1766 CONECT 2247 2253 CONECT 2253 2247 2254 CONECT 2254 2253 2255 2257 CONECT 2255 2254 2256 2261 CONECT 2256 2255 CONECT 2257 2254 2258 CONECT 2258 2257 2259 CONECT 2259 2258 2260 CONECT 2260 2259 CONECT 2261 2255 CONECT 2741 2747 CONECT 2747 2741 2748 CONECT 2748 2747 2749 2751 CONECT 2749 2748 2750 2755 CONECT 2750 2749 CONECT 2751 2748 2752 CONECT 2752 2751 2753 CONECT 2753 2752 2754 CONECT 2754 2753 CONECT 2755 2749 MASTER 488 0 6 18 0 0 0 6 5285 10 60 50 END