HEADER TRANSFERASE 11-DEC-23 8XDY TITLE O-METHYLTRANSFERASE FROM LYCORIS LONGITUBA M52A VARIANT COMPLEXED WITH TITLE 2 MG, SAH, AND 3,4-DIHYDROXYBENZALDEHYDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NORBELLADINE O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYCORIS LONGITUBA; SOURCE 3 ORGANISM_TAXID: 272140; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI M15; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1007065 KEYWDS O-METHYLTRANSFERASE FAMILY PROTEIN, LLOMT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.H.SAW,Y.NAKASHIMA,H.MORITA REVDAT 1 07-AUG-24 8XDY 0 JRNL AUTH S.Y.Y.HNIN,Y.NAKASHIMA,T.KODAMA,H.MORITA JRNL TITL STRUCTURE-BASED CATALYTIC MECHANISM OF AMARYLLIDACEAE JRNL TITL 2 O-METHYLTRANSFERASES JRNL REF ACS CATALYSIS 11865 2024 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.4C03305 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7600 - 5.6500 1.00 2620 143 0.1734 0.1815 REMARK 3 2 5.6500 - 4.4900 1.00 2603 166 0.1524 0.1707 REMARK 3 3 4.4900 - 3.9200 1.00 2657 132 0.1273 0.1413 REMARK 3 4 3.9200 - 3.5600 1.00 2590 135 0.1426 0.1776 REMARK 3 5 3.5600 - 3.3100 1.00 2631 159 0.1650 0.1765 REMARK 3 6 3.3100 - 3.1100 1.00 2605 155 0.1674 0.1972 REMARK 3 7 3.1100 - 2.9600 1.00 2676 116 0.1853 0.2529 REMARK 3 8 2.9600 - 2.8300 1.00 2642 137 0.1983 0.2013 REMARK 3 9 2.8300 - 2.7200 0.99 2576 152 0.1957 0.2665 REMARK 3 10 2.7200 - 2.6300 0.99 2580 156 0.1948 0.2266 REMARK 3 11 2.6300 - 2.5400 0.99 2644 136 0.2023 0.2485 REMARK 3 12 2.5400 - 2.4700 1.00 2599 142 0.2240 0.2833 REMARK 3 13 2.4700 - 2.4100 1.00 2625 139 0.2247 0.2254 REMARK 3 14 2.4100 - 2.3500 1.00 2646 136 0.2413 0.2306 REMARK 3 15 2.3500 - 2.2900 1.00 2651 119 0.2419 0.2493 REMARK 3 16 2.2900 - 2.2400 1.00 2641 125 0.2537 0.2868 REMARK 3 17 2.2400 - 2.2000 1.00 2625 131 0.2818 0.3177 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.221 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.726 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4160 REMARK 3 ANGLE : 0.617 5672 REMARK 3 CHIRALITY : 0.044 627 REMARK 3 PLANARITY : 0.003 735 REMARK 3 DIHEDRAL : 19.470 1554 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.2783 10.6530 20.3534 REMARK 3 T TENSOR REMARK 3 T11: 0.2412 T22: 0.2526 REMARK 3 T33: 0.2339 T12: -0.0002 REMARK 3 T13: -0.0023 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.6792 L22: 0.2887 REMARK 3 L33: 1.1631 L12: -0.0274 REMARK 3 L13: 0.3304 L23: 0.0947 REMARK 3 S TENSOR REMARK 3 S11: 0.0344 S12: 0.0008 S13: -0.0359 REMARK 3 S21: -0.1202 S22: -0.0140 S23: 0.0005 REMARK 3 S31: 0.0162 S32: -0.1329 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9865 21.7001 8.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.3787 T22: 0.2724 REMARK 3 T33: 0.2900 T12: -0.0088 REMARK 3 T13: 0.0105 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3130 L22: 0.2202 REMARK 3 L33: 0.7976 L12: 0.0570 REMARK 3 L13: 0.2445 L23: -0.3133 REMARK 3 S TENSOR REMARK 3 S11: -0.0929 S12: 0.0795 S13: 0.1825 REMARK 3 S21: -0.2784 S22: 0.0678 S23: 0.0757 REMARK 3 S31: -0.2497 S32: -0.0056 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5082 5.3087 14.4498 REMARK 3 T TENSOR REMARK 3 T11: 0.2445 T22: 0.2318 REMARK 3 T33: 0.2701 T12: -0.0105 REMARK 3 T13: 0.0643 T23: -0.0411 REMARK 3 L TENSOR REMARK 3 L11: 0.3356 L22: 0.0779 REMARK 3 L33: 0.5440 L12: -0.0630 REMARK 3 L13: 0.1968 L23: -0.2024 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: 0.0753 S13: -0.0838 REMARK 3 S21: -0.1781 S22: -0.0039 S23: -0.0748 REMARK 3 S31: 0.0784 S32: 0.1140 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2433 -2.5760 35.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.3552 T22: 0.3268 REMARK 3 T33: 0.4070 T12: 0.0262 REMARK 3 T13: -0.0232 T23: 0.0436 REMARK 3 L TENSOR REMARK 3 L11: 0.4148 L22: 0.3926 REMARK 3 L33: 0.1769 L12: 0.3159 REMARK 3 L13: 0.1402 L23: 0.2387 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: -0.2168 S13: -0.3458 REMARK 3 S21: 0.1973 S22: -0.0401 S23: -0.1867 REMARK 3 S31: 0.2610 S32: 0.2071 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2626 0.8718 40.3306 REMARK 3 T TENSOR REMARK 3 T11: 0.3443 T22: 0.3156 REMARK 3 T33: 0.3969 T12: 0.0353 REMARK 3 T13: -0.0289 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.1275 L22: 0.1671 REMARK 3 L33: 0.1491 L12: 0.0692 REMARK 3 L13: 0.1380 L23: 0.0566 REMARK 3 S TENSOR REMARK 3 S11: 0.0072 S12: -0.1245 S13: -0.2172 REMARK 3 S21: 0.0905 S22: 0.1546 S23: -0.0344 REMARK 3 S31: 0.2844 S32: 0.3432 S33: 0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5529 17.8225 41.6607 REMARK 3 T TENSOR REMARK 3 T11: 0.2510 T22: 0.2961 REMARK 3 T33: 0.3106 T12: -0.0515 REMARK 3 T13: -0.0339 T23: -0.0255 REMARK 3 L TENSOR REMARK 3 L11: 0.4629 L22: 0.4007 REMARK 3 L33: 0.4342 L12: -0.4347 REMARK 3 L13: -0.0343 L23: 0.0762 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: -0.0995 S13: 0.0407 REMARK 3 S21: 0.1606 S22: -0.0408 S23: -0.2513 REMARK 3 S31: -0.0894 S32: 0.1891 S33: 0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7242 13.6829 42.1527 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.2244 REMARK 3 T33: 0.1899 T12: 0.0048 REMARK 3 T13: 0.0055 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 0.5058 L22: 0.3706 REMARK 3 L33: 0.9347 L12: 0.0790 REMARK 3 L13: 0.4470 L23: 0.3281 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: -0.1128 S13: 0.0018 REMARK 3 S21: 0.0852 S22: 0.0644 S23: -0.0144 REMARK 3 S31: -0.0398 S32: -0.1052 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XDY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 47.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% (W/V) PEG 8000, 0.2M MGCL2, 0.1M REMARK 280 TRIS-HCL (PH 8.0), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.74600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.93600 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.74600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.93600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLN B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 23 CE NZ REMARK 470 GLU A 36 CD OE1 OE2 REMARK 470 LYS A 73 CD CE NZ REMARK 470 LYS A 118 CG CD CE NZ REMARK 470 LYS A 213 CD CE NZ REMARK 470 LYS B 73 CE NZ REMARK 470 LYS B 144 CD CE NZ REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 517 O HOH A 520 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 516 O HOH B 671 3545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 81 -131.46 54.50 REMARK 500 ASP A 155 35.50 -150.78 REMARK 500 ALA A 156 -132.93 -108.24 REMARK 500 ASP B 7 90.42 63.44 REMARK 500 ASN B 14 104.77 -165.98 REMARK 500 TYR B 81 -131.34 57.10 REMARK 500 ASP B 155 38.91 -154.98 REMARK 500 ALA B 156 -132.75 -111.40 REMARK 500 TRP B 185 67.05 38.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD1 REMARK 620 2 ASP A 181 OD2 87.6 REMARK 620 3 ASN A 182 OD1 85.9 89.2 REMARK 620 4 HOH A 406 O 97.8 95.0 174.5 REMARK 620 5 HOH A 460 O 172.7 85.2 93.5 83.3 REMARK 620 6 HOH A 483 O 101.2 168.6 84.2 91.1 86.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 504 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 155 OD1 REMARK 620 2 ASP B 181 OD2 85.8 REMARK 620 3 ASN B 182 OD1 93.1 79.2 REMARK 620 4 H6N B 503 O3 90.7 175.3 97.9 REMARK 620 5 H6N B 503 O3 166.9 106.8 92.8 76.9 REMARK 620 6 H6N B 503 O4 169.5 104.6 90.6 79.0 2.9 REMARK 620 7 H6N B 503 O4 90.1 175.4 98.9 1.1 77.4 79.5 REMARK 620 8 HOH B 632 O 95.7 83.9 160.4 99.5 82.4 83.9 98.6 REMARK 620 N 1 2 3 4 5 6 7 DBREF1 8XDY A 1 239 UNP A0A6B9TNK2_9ASPA DBREF2 8XDY A A0A6B9TNK2 1 239 DBREF1 8XDY B 1 239 UNP A0A6B9TNK2_9ASPA DBREF2 8XDY B A0A6B9TNK2 1 239 SEQADV 8XDY GLY A -2 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDY PRO A -1 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDY GLY A 0 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDY ALA A 52 UNP A0A6B9TNK MET 52 ENGINEERED MUTATION SEQADV 8XDY GLY B -2 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDY PRO B -1 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDY GLY B 0 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDY ALA B 52 UNP A0A6B9TNK MET 52 ENGINEERED MUTATION SEQRES 1 A 242 GLY PRO GLY MET GLY ALA SER GLN ASP ASP TYR ALA LEU SEQRES 2 A 242 ILE HIS LYS ASN ILE LEU HIS SER GLU ASP LEU LEU LYS SEQRES 3 A 242 TYR ILE LEU GLU THR SER VAL TYR PRO ARG GLU HIS GLU SEQRES 4 A 242 GLN LEU LYS GLY LEU ARG GLU VAL THR GLU LYS HIS GLU SEQRES 5 A 242 TRP SER ALA ALA LEU VAL ALA ALA ASP GLU GLY LEU PHE SEQRES 6 A 242 LEU SER MET LEU LEU LYS LEU MET ASN ALA LYS ARG THR SEQRES 7 A 242 ILE GLU ILE GLY VAL TYR THR GLY TYR SER LEU LEU THR SEQRES 8 A 242 THR ALA LEU ALA LEU PRO GLU ASP GLY LYS ILE THR ALA SEQRES 9 A 242 ILE ASP VAL ASN LYS SER TYR PHE GLU ILE GLY LEU PRO SEQRES 10 A 242 PHE ILE GLN LYS ALA GLY VAL GLU HIS LYS ILE ASN PHE SEQRES 11 A 242 ILE GLU SER GLU ALA LEU PRO VAL LEU ASP GLN MET LEU SEQRES 12 A 242 GLN GLU MET LYS GLU GLU ASP LEU TYR ASP PHE ALA PHE SEQRES 13 A 242 VAL ASP ALA ASP LYS PRO ASN TYR ALA ASN TYR HIS GLU SEQRES 14 A 242 ARG LEU VAL LYS LEU VAL ARG VAL GLY GLY ALA ILE VAL SEQRES 15 A 242 TYR ASP ASN THR LEU TRP PHE GLY THR VAL ALA PHE PRO SEQRES 16 A 242 GLU TYR PRO GLY LEU HIS PRO GLU GLU GLU GLU CYS ARG SEQRES 17 A 242 VAL SER PHE ARG ASN LEU ASN LYS LEU LEU ALA ALA ASP SEQRES 18 A 242 PRO ARG VAL GLU ILE SER GLN VAL SER ILE GLY ASP GLY SEQRES 19 A 242 LEU THR ILE CYS ARG ARG LEU TYR SEQRES 1 B 242 GLY PRO GLY MET GLY ALA SER GLN ASP ASP TYR ALA LEU SEQRES 2 B 242 ILE HIS LYS ASN ILE LEU HIS SER GLU ASP LEU LEU LYS SEQRES 3 B 242 TYR ILE LEU GLU THR SER VAL TYR PRO ARG GLU HIS GLU SEQRES 4 B 242 GLN LEU LYS GLY LEU ARG GLU VAL THR GLU LYS HIS GLU SEQRES 5 B 242 TRP SER ALA ALA LEU VAL ALA ALA ASP GLU GLY LEU PHE SEQRES 6 B 242 LEU SER MET LEU LEU LYS LEU MET ASN ALA LYS ARG THR SEQRES 7 B 242 ILE GLU ILE GLY VAL TYR THR GLY TYR SER LEU LEU THR SEQRES 8 B 242 THR ALA LEU ALA LEU PRO GLU ASP GLY LYS ILE THR ALA SEQRES 9 B 242 ILE ASP VAL ASN LYS SER TYR PHE GLU ILE GLY LEU PRO SEQRES 10 B 242 PHE ILE GLN LYS ALA GLY VAL GLU HIS LYS ILE ASN PHE SEQRES 11 B 242 ILE GLU SER GLU ALA LEU PRO VAL LEU ASP GLN MET LEU SEQRES 12 B 242 GLN GLU MET LYS GLU GLU ASP LEU TYR ASP PHE ALA PHE SEQRES 13 B 242 VAL ASP ALA ASP LYS PRO ASN TYR ALA ASN TYR HIS GLU SEQRES 14 B 242 ARG LEU VAL LYS LEU VAL ARG VAL GLY GLY ALA ILE VAL SEQRES 15 B 242 TYR ASP ASN THR LEU TRP PHE GLY THR VAL ALA PHE PRO SEQRES 16 B 242 GLU TYR PRO GLY LEU HIS PRO GLU GLU GLU GLU CYS ARG SEQRES 17 B 242 VAL SER PHE ARG ASN LEU ASN LYS LEU LEU ALA ALA ASP SEQRES 18 B 242 PRO ARG VAL GLU ILE SER GLN VAL SER ILE GLY ASP GLY SEQRES 19 B 242 LEU THR ILE CYS ARG ARG LEU TYR HET MG A 301 1 HET SAH A 302 26 HET GOL A 303 6 HET TRS B 501 8 HET GOL B 502 6 HET H6N B 503 20 HET MG B 504 1 HET SAH B 505 26 HETNAM MG MAGNESIUM ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM GOL GLYCEROL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM H6N PROTOCATECHUIC ALDEHYDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN TRS TRIS BUFFER FORMUL 3 MG 2(MG 2+) FORMUL 4 SAH 2(C14 H20 N6 O5 S) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 8 H6N C7 H6 O3 FORMUL 11 HOH *236(H2 O) HELIX 1 AA1 SER A 4 TYR A 8 5 5 HELIX 2 AA2 SER A 18 VAL A 30 1 13 HELIX 3 AA3 TYR A 31 GLU A 34 5 4 HELIX 4 AA4 HIS A 35 GLU A 46 1 12 HELIX 5 AA5 TRP A 50 LEU A 54 5 5 HELIX 6 AA6 ALA A 56 MET A 70 1 15 HELIX 7 AA7 GLY A 83 LEU A 93 1 11 HELIX 8 AA8 ASN A 105 ALA A 119 1 15 HELIX 9 AA9 VAL A 121 HIS A 123 5 3 HELIX 10 AB1 GLU A 131 MET A 143 1 13 HELIX 11 AB2 LYS A 144 LEU A 148 5 5 HELIX 12 AB3 ASP A 157 PRO A 159 5 3 HELIX 13 AB4 ASN A 160 LEU A 171 1 12 HELIX 14 AB5 LEU A 184 PHE A 191 5 8 HELIX 15 AB6 HIS A 198 ASP A 218 1 21 HELIX 16 AB7 SER B 18 VAL B 30 1 13 HELIX 17 AB8 TYR B 31 GLU B 34 5 4 HELIX 18 AB9 HIS B 35 GLU B 46 1 12 HELIX 19 AC1 TRP B 50 LEU B 54 5 5 HELIX 20 AC2 ALA B 56 MET B 70 1 15 HELIX 21 AC3 GLY B 83 LEU B 93 1 11 HELIX 22 AC4 ASN B 105 ALA B 119 1 15 HELIX 23 AC5 VAL B 121 HIS B 123 5 3 HELIX 24 AC6 GLU B 131 MET B 143 1 13 HELIX 25 AC7 LYS B 144 LEU B 148 5 5 HELIX 26 AC8 ASP B 157 PRO B 159 5 3 HELIX 27 AC9 ASN B 160 LEU B 171 1 12 HELIX 28 AD1 LEU B 184 PHE B 191 5 8 HELIX 29 AD2 HIS B 198 ASP B 218 1 21 SHEET 1 AA1 7 ILE A 125 GLU A 129 0 SHEET 2 AA1 7 LYS A 98 ASP A 103 1 N ALA A 101 O ILE A 128 SHEET 3 AA1 7 ARG A 74 ILE A 78 1 N GLU A 77 O THR A 100 SHEET 4 AA1 7 TYR A 149 VAL A 154 1 O ASP A 150 N ARG A 74 SHEET 5 AA1 7 VAL A 172 ASP A 181 1 O VAL A 179 N VAL A 154 SHEET 6 AA1 7 LEU A 232 ARG A 237 -1 O CYS A 235 N ILE A 178 SHEET 7 AA1 7 VAL A 221 VAL A 226 -1 N VAL A 226 O LEU A 232 SHEET 1 AA2 7 ILE B 125 GLU B 129 0 SHEET 2 AA2 7 LYS B 98 ASP B 103 1 N ALA B 101 O ILE B 128 SHEET 3 AA2 7 ARG B 74 ILE B 78 1 N GLU B 77 O THR B 100 SHEET 4 AA2 7 TYR B 149 VAL B 154 1 O ASP B 150 N ARG B 74 SHEET 5 AA2 7 VAL B 172 ASP B 181 1 O VAL B 179 N VAL B 154 SHEET 6 AA2 7 LEU B 232 ARG B 237 -1 O CYS B 235 N ILE B 178 SHEET 7 AA2 7 VAL B 221 VAL B 226 -1 N VAL B 226 O LEU B 232 LINK OD1 ASP A 155 MG MG A 301 1555 1555 2.18 LINK OD2 ASP A 181 MG MG A 301 1555 1555 1.91 LINK OD1 ASN A 182 MG MG A 301 1555 1555 2.24 LINK MG MG A 301 O HOH A 406 1555 1555 2.11 LINK MG MG A 301 O HOH A 460 1555 1555 2.55 LINK MG MG A 301 O HOH A 483 1555 1555 2.26 LINK OD1 ASP B 155 MG MG B 504 1555 1555 2.11 LINK OD2 ASP B 181 MG MG B 504 1555 1555 2.15 LINK OD1 ASN B 182 MG MG B 504 1555 1555 2.22 LINK O3 AH6N B 503 MG MG B 504 1555 1555 2.19 LINK O3 BH6N B 503 MG MG B 504 1555 1555 2.09 LINK O4 AH6N B 503 MG MG B 504 1555 1555 2.10 LINK O4 BH6N B 503 MG MG B 504 1555 1555 2.29 LINK MG MG B 504 O HOH B 632 1555 1555 2.24 CRYST1 49.857 81.492 117.872 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020057 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008484 0.00000