HEADER METAL BINDING PROTEIN 11-DEC-23 8XE7 TITLE CRYSTAL STRUCTURE OF HUMAN SIRT2 WITHOUT SIRT2-SPECIFIC INSERTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SIRT2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DEACETYLATION, ZN BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.KONUMA,S.AKASHI REVDAT 1 22-MAY-24 8XE7 0 JRNL AUTH N.SUZUKI,T.KONUMA,T.IKEGAMI,S.AKASHI JRNL TITL BIOPHYSICAL INSIGHTS INTO THE DIMER FORMATION OF HUMAN JRNL TITL 2 SIRTUIN 2. JRNL REF PROTEIN SCI. V. 33 E4994 2024 JRNL REFN ESSN 1469-896X JRNL PMID 38647411 JRNL DOI 10.1002/PRO.4994 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1049 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.4900 - 3.7300 1.00 2932 134 0.1779 0.2285 REMARK 3 2 3.7300 - 2.9600 1.00 2847 144 0.2088 0.2574 REMARK 3 3 2.9600 - 2.5900 0.99 2814 162 0.2254 0.2684 REMARK 3 4 2.5900 - 2.3500 0.99 2828 145 0.2383 0.2573 REMARK 3 5 2.3500 - 2.1800 0.99 2788 155 0.2282 0.2607 REMARK 3 6 2.1800 - 2.0500 0.99 2810 152 0.2457 0.2898 REMARK 3 7 2.0500 - 1.9500 0.98 2790 157 0.2512 0.3044 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.241 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.267 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2185 REMARK 3 ANGLE : 1.070 2967 REMARK 3 CHIRALITY : 0.056 335 REMARK 3 PLANARITY : 0.007 379 REMARK 3 DIHEDRAL : 11.844 300 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0505 3.4389 28.8006 REMARK 3 T TENSOR REMARK 3 T11: 1.0218 T22: 0.4772 REMARK 3 T33: 0.0255 T12: -0.3341 REMARK 3 T13: 0.1032 T23: -0.1250 REMARK 3 L TENSOR REMARK 3 L11: 0.3148 L22: 0.3335 REMARK 3 L33: 0.3518 L12: -0.0390 REMARK 3 L13: -0.0167 L23: 0.1179 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.3504 S13: -0.1652 REMARK 3 S21: 0.8002 S22: -0.1378 S23: 0.0408 REMARK 3 S31: 0.8823 S32: -0.4359 S33: -0.0716 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.8144 -2.2989 10.1886 REMARK 3 T TENSOR REMARK 3 T11: 0.4425 T22: 0.2324 REMARK 3 T33: 0.2597 T12: -0.1366 REMARK 3 T13: -0.0132 T23: -0.0547 REMARK 3 L TENSOR REMARK 3 L11: 1.3112 L22: 3.2103 REMARK 3 L33: 3.2118 L12: -0.2819 REMARK 3 L13: 0.3962 L23: 1.1157 REMARK 3 S TENSOR REMARK 3 S11: 0.3972 S12: -0.0374 S13: -0.0728 REMARK 3 S21: 0.6034 S22: -0.2068 S23: -0.2236 REMARK 3 S31: 0.4428 S32: -0.2732 S33: -0.1210 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3076 -1.9258 -13.4952 REMARK 3 T TENSOR REMARK 3 T11: 0.2192 T22: 0.2084 REMARK 3 T33: 0.3418 T12: 0.0153 REMARK 3 T13: 0.0221 T23: -0.0435 REMARK 3 L TENSOR REMARK 3 L11: 2.0829 L22: 1.8745 REMARK 3 L33: 1.0429 L12: 0.9981 REMARK 3 L13: -0.6519 L23: 0.7695 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.1647 S13: -0.2013 REMARK 3 S21: -0.2071 S22: 0.1808 S23: -0.6783 REMARK 3 S31: -0.1714 S32: 0.2726 S33: -0.1987 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0535 -11.8809 9.7106 REMARK 3 T TENSOR REMARK 3 T11: 0.8535 T22: 0.2882 REMARK 3 T33: 0.2662 T12: -0.2566 REMARK 3 T13: 0.0291 T23: -0.0189 REMARK 3 L TENSOR REMARK 3 L11: 1.9777 L22: 1.0588 REMARK 3 L33: 2.2696 L12: 0.2288 REMARK 3 L13: -1.0969 L23: -0.3529 REMARK 3 S TENSOR REMARK 3 S11: 0.0150 S12: 0.0657 S13: -0.4500 REMARK 3 S21: 0.8186 S22: -0.1613 S23: -0.0200 REMARK 3 S31: 1.1185 S32: -0.6375 S33: 0.2331 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 158 THROUGH 240 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1457 -6.4708 -7.0624 REMARK 3 T TENSOR REMARK 3 T11: 0.1200 T22: 0.2201 REMARK 3 T33: 0.2169 T12: -0.0308 REMARK 3 T13: -0.0084 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.3578 L22: 2.6062 REMARK 3 L33: 2.0403 L12: 0.8601 REMARK 3 L13: 0.1180 L23: 1.5108 REMARK 3 S TENSOR REMARK 3 S11: 0.1560 S12: -0.0902 S13: -0.0604 REMARK 3 S21: 0.1457 S22: -0.3384 S23: 0.2162 REMARK 3 S31: 0.2120 S32: -0.4454 S33: 0.1065 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 241 THROUGH 337 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3566 5.0982 15.4799 REMARK 3 T TENSOR REMARK 3 T11: 0.3781 T22: 0.2903 REMARK 3 T33: 0.2163 T12: -0.0855 REMARK 3 T13: 0.0218 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.4095 L22: 2.4694 REMARK 3 L33: 2.9170 L12: 0.1419 REMARK 3 L13: -0.1774 L23: 2.4457 REMARK 3 S TENSOR REMARK 3 S11: 0.2502 S12: -0.0111 S13: 0.0320 REMARK 3 S21: 0.7137 S22: -0.3536 S23: 0.0980 REMARK 3 S31: 0.5210 S32: -0.4294 S33: 0.0064 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 338 THROUGH 355 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4993 -20.1970 13.5800 REMARK 3 T TENSOR REMARK 3 T11: 1.1936 T22: 0.3051 REMARK 3 T33: 0.2603 T12: -0.2544 REMARK 3 T13: -0.0453 T23: 0.0722 REMARK 3 L TENSOR REMARK 3 L11: 0.9203 L22: 0.1329 REMARK 3 L33: 1.2196 L12: -0.2424 REMARK 3 L13: -0.8931 L23: 0.0379 REMARK 3 S TENSOR REMARK 3 S11: 0.1173 S12: -0.1844 S13: -0.1112 REMARK 3 S21: 1.3227 S22: -0.3498 S23: -0.0391 REMARK 3 S31: 0.4414 S32: -0.2280 S33: -0.2053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20867 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 45.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1J8F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS (PH6.0), PEG 3350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.60400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 50 REMARK 465 PRO A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 GLN A 54 REMARK 465 LYS A 55 REMARK 465 PHE A 96 REMARK 465 ARG A 97 REMARK 465 SER A 98 REMARK 465 SER A 356 REMARK 465 GLY A 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 56 CG CD OE1 OE2 REMARK 470 GLU A 74 CG CD OE1 OE2 REMARK 470 ARG A 75 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 106 CG OD1 ND2 REMARK 470 LYS A 126 CE NZ REMARK 470 GLN A 142 CG CD OE1 NE2 REMARK 470 PHE A 143 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 ARG A 201 NE CZ NH1 NH2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 GLN A 225 CG CD OE1 NE2 REMARK 470 LEU A 227 CG CD1 CD2 REMARK 470 GLN A 248 CG CD OE1 NE2 REMARK 470 SER A 249 OG REMARK 470 LEU A 252 CG CD1 CD2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LEU A 258 CD2 REMARK 470 GLN A 265 CD OE1 NE2 REMARK 470 LYS A 275 CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 LEU A 321 CG CD1 CD2 REMARK 470 GLN A 326 OE1 NE2 REMARK 470 GLU A 333 CD OE1 OE2 REMARK 470 LEU A 334 CG CD1 CD2 REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 347 NE CZ NH1 NH2 REMARK 470 GLN A 355 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 628 O HOH A 637 2.15 REMARK 500 O HOH A 621 O HOH A 636 2.19 REMARK 500 O HOH A 536 O HOH A 635 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 620 O HOH A 638 2645 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 139 CA - CB - CG ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 57 118.19 -33.32 REMARK 500 SER A 100 34.12 -65.42 REMARK 500 HIS A 111 63.91 33.93 REMARK 500 CYS A 200 -73.34 -121.31 REMARK 500 ASP A 231 38.00 -76.36 REMARK 500 LYS A 253 48.12 -142.41 REMARK 500 TYR A 315 -13.48 -148.58 REMARK 500 ARG A 316 -8.59 -146.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 195 SG REMARK 620 2 CYS A 200 SG 113.1 REMARK 620 3 CYS A 221 SG 111.5 109.8 REMARK 620 4 CYS A 224 SG 94.7 113.8 113.2 REMARK 620 N 1 2 3 DBREF 8XE7 A 52 357 UNP Q8IXJ6 SIR2_HUMAN 52 357 SEQADV 8XE7 GLY A 50 UNP Q8IXJ6 EXPRESSION TAG SEQADV 8XE7 PRO A 51 UNP Q8IXJ6 EXPRESSION TAG SEQADV 8XE7 A UNP Q8IXJ6 GLY 291 DELETION SEQADV 8XE7 A UNP Q8IXJ6 GLN 292 DELETION SEQADV 8XE7 A UNP Q8IXJ6 SER 293 DELETION SEQADV 8XE7 A UNP Q8IXJ6 ASP 294 DELETION SEQADV 8XE7 A UNP Q8IXJ6 PRO 295 DELETION SEQADV 8XE7 A UNP Q8IXJ6 PHE 296 DELETION SEQADV 8XE7 A UNP Q8IXJ6 LEU 297 DELETION SEQADV 8XE7 A UNP Q8IXJ6 GLY 298 DELETION SEQADV 8XE7 A UNP Q8IXJ6 MET 299 DELETION SEQADV 8XE7 A UNP Q8IXJ6 ILE 300 DELETION SEQADV 8XE7 A UNP Q8IXJ6 MET 301 DELETION SEQADV 8XE7 A UNP Q8IXJ6 GLY 302 DELETION SEQADV 8XE7 A UNP Q8IXJ6 LEU 303 DELETION SEQADV 8XE7 A UNP Q8IXJ6 GLY 304 DELETION SEQADV 8XE7 A UNP Q8IXJ6 GLY 305 DELETION SEQRES 1 A 293 GLY PRO GLY SER GLN LYS GLU ARG LEU LEU ASP GLU LEU SEQRES 2 A 293 THR LEU GLU GLY VAL ALA ARG TYR MET GLN SER GLU ARG SEQRES 3 A 293 CYS ARG ARG VAL ILE CYS LEU VAL GLY ALA GLY ILE SER SEQRES 4 A 293 THR SER ALA GLY ILE PRO ASP PHE ARG SER PRO SER THR SEQRES 5 A 293 GLY LEU TYR ASP ASN LEU GLU LYS TYR HIS LEU PRO TYR SEQRES 6 A 293 PRO GLU ALA ILE PHE GLU ILE SER TYR PHE LYS LYS HIS SEQRES 7 A 293 PRO GLU PRO PHE PHE ALA LEU ALA LYS GLU LEU TYR PRO SEQRES 8 A 293 GLY GLN PHE LYS PRO THR ILE CYS HIS TYR PHE MET ARG SEQRES 9 A 293 LEU LEU LYS ASP LYS GLY LEU LEU LEU ARG CYS TYR THR SEQRES 10 A 293 GLN ASN ILE ASP THR LEU GLU ARG ILE ALA GLY LEU GLU SEQRES 11 A 293 GLN GLU ASP LEU VAL GLU ALA HIS GLY THR PHE TYR THR SEQRES 12 A 293 SER HIS CYS VAL SER ALA SER CYS ARG HIS GLU TYR PRO SEQRES 13 A 293 LEU SER TRP MET LYS GLU LYS ILE PHE SER GLU VAL THR SEQRES 14 A 293 PRO LYS CYS GLU ASP CYS GLN SER LEU VAL LYS PRO ASP SEQRES 15 A 293 ILE VAL PHE PHE GLY GLU SER LEU PRO ALA ARG PHE PHE SEQRES 16 A 293 SER CYS MET GLN SER ASP PHE LEU LYS VAL ASP LEU LEU SEQRES 17 A 293 LEU VAL MET GLY THR SER LEU GLN VAL GLN PRO PHE ALA SEQRES 18 A 293 SER LEU ILE SER LYS ALA PRO LEU SER THR PRO ARG LEU SEQRES 19 A 293 LEU ILE ASN LYS GLU LYS ALA GLY MET ASP PHE ASP SER SEQRES 20 A 293 LYS LYS ALA TYR ARG ASP VAL ALA TRP LEU GLY GLU CYS SEQRES 21 A 293 ASP GLN GLY CYS LEU ALA LEU ALA GLU LEU LEU GLY TRP SEQRES 22 A 293 LYS LYS GLU LEU GLU ASP LEU VAL ARG ARG GLU HIS ALA SEQRES 23 A 293 SER ILE ASP ALA GLN SER GLY HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *138(H2 O) HELIX 1 AA1 THR A 63 GLN A 72 1 10 HELIX 2 AA2 ALA A 85 GLY A 92 5 8 HELIX 3 AA3 GLY A 102 ASN A 106 5 5 HELIX 4 AA4 LEU A 107 HIS A 111 5 5 HELIX 5 AA5 TYR A 114 PHE A 119 5 6 HELIX 6 AA6 GLU A 120 HIS A 127 1 8 HELIX 7 AA7 PRO A 128 TYR A 139 1 12 HELIX 8 AA8 THR A 146 LYS A 158 1 13 HELIX 9 AA9 THR A 171 ALA A 176 1 6 HELIX 10 AB1 LEU A 206 SER A 215 1 10 HELIX 11 AB2 PRO A 240 GLN A 248 1 9 HELIX 12 AB3 PHE A 269 LYS A 275 5 7 HELIX 13 AB4 GLU A 323 GLY A 336 1 14 HELIX 14 AB5 TRP A 337 GLN A 355 1 19 SHEET 1 AA1 6 LEU A 183 GLU A 185 0 SHEET 2 AA1 6 LEU A 161 THR A 166 1 N THR A 166 O VAL A 184 SHEET 3 AA1 6 VAL A 79 VAL A 83 1 N CYS A 81 O TYR A 165 SHEET 4 AA1 6 LEU A 256 MET A 260 1 O LEU A 258 N LEU A 82 SHEET 5 AA1 6 ARG A 282 ASN A 286 1 O LEU A 283 N VAL A 259 SHEET 6 AA1 6 ASP A 317 LEU A 321 1 O TRP A 320 N LEU A 284 SHEET 1 AA2 3 GLU A 203 PRO A 205 0 SHEET 2 AA2 3 GLY A 188 CYS A 195 -1 N SER A 193 O TYR A 204 SHEET 3 AA2 3 VAL A 228 ILE A 232 -1 O ASP A 231 N THR A 192 LINK SG CYS A 195 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 200 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 221 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 224 ZN ZN A 401 1555 1555 2.31 CISPEP 1 GLN A 267 PRO A 268 0 1.42 CRYST1 34.893 69.208 61.171 90.00 99.34 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028659 0.000000 0.004714 0.00000 SCALE2 0.000000 0.014449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016567 0.00000