HEADER TRANSFERASE 13-DEC-23 8XEY TITLE THE CRYSTAL STRUCTURE OF C-TERMINAL KINASE DOMAIN OF RSK2 FROM BIORTUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOMAL PROTEIN S6 KINASE ALPHA-3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: S6K-ALPHA-3,90 KDA RIBOSOMAL PROTEIN S6 KINASE 3,P90-RSK 3, COMPND 5 P90RSK3,INSULIN-STIMULATED PROTEIN KINASE 1,ISPK-1,MAP KINASE- COMPND 6 ACTIVATED PROTEIN KINASE 1B,MAPK-ACTIVATED PROTEIN KINASE 1B,MAPKAP COMPND 7 KINASE 1B,MAPKAPK-1B,RIBOSOMAL S6 KINASE 2,RSK-2,PP90RSK2; COMPND 8 EC: 2.7.11.1; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RPS6KA3, ISPK1, MAPKAPK1B, RSK2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,W.CHENG,Z.LV,Q.MENG,B.ZHANG REVDAT 1 06-MAR-24 8XEY 0 JRNL AUTH F.WANG,W.CHENG,Z.LV,Q.MENG,B.ZHANG JRNL TITL THE CRYSTAL STRUCTURE OF C-TERMINAL KINASE DOMAIN OF RSK2 JRNL TITL 2 FROM BIORTUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.359 REMARK 3 FREE R VALUE TEST SET COUNT : 551 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 700 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.5750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 58 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.14300 REMARK 3 B22 (A**2) : 3.14300 REMARK 3 B33 (A**2) : -6.28500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.387 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.288 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.576 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2544 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2324 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3445 ; 1.518 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5417 ; 0.500 ; 1.567 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 8.082 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 7.837 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 435 ;15.744 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.068 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2873 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 499 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 490 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 113 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1253 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 57 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1247 ; 5.140 ; 5.354 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1247 ; 5.138 ; 5.354 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1557 ; 7.938 ; 8.006 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1558 ; 7.935 ; 8.010 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1297 ; 4.801 ; 5.635 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1298 ; 4.799 ; 5.635 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1888 ; 7.450 ; 8.311 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1889 ; 7.448 ; 8.312 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8XEY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10370 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.650 REMARK 200 RESOLUTION RANGE LOW (A) : 49.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.80 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.99400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH8.5, 25%PEG3,350, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 147.03500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 23.25650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 23.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.51750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 23.25650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 23.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 220.55250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 23.25650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 23.25650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.51750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 23.25650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 23.25650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 220.55250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 147.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 400 REMARK 465 THR A 401 REMARK 465 VAL A 402 REMARK 465 SER A 715 REMARK 465 PRO A 716 REMARK 465 VAL A 717 REMARK 465 LEU A 718 REMARK 465 GLU A 719 REMARK 465 PRO A 720 REMARK 465 VAL A 721 REMARK 465 GLY A 722 REMARK 465 ARG A 723 REMARK 465 SER A 724 REMARK 465 THR A 725 REMARK 465 LEU A 726 REMARK 465 ALA A 727 REMARK 465 GLN A 728 REMARK 465 ARG A 729 REMARK 465 ARG A 730 REMARK 465 GLY A 731 REMARK 465 ILE A 732 REMARK 465 LYS A 733 REMARK 465 LYS A 734 REMARK 465 ILE A 735 REMARK 465 THR A 736 REMARK 465 SER A 737 REMARK 465 THR A 738 REMARK 465 ALA A 739 REMARK 465 LEU A 740 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN A 472 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 663 NE2 GLN A 666 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLN A 472 CG - CD - OE1 ANGL. DEV. = -14.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 425 -141.47 -134.63 REMARK 500 ILE A 428 -3.15 -149.79 REMARK 500 ASP A 539 41.77 -148.32 REMARK 500 LEU A 540 46.24 -80.43 REMARK 500 ASP A 561 89.43 41.70 REMARK 500 PHE A 562 36.81 -94.22 REMARK 500 LEU A 568 92.71 -45.00 REMARK 500 GLU A 571 153.18 -38.12 REMARK 500 PHE A 584 108.26 -33.41 REMARK 500 PRO A 587 2.99 -55.15 REMARK 500 VAL A 589 41.68 -97.24 REMARK 500 HIS A 661 130.21 -37.81 REMARK 500 HIS A 681 45.49 -101.38 REMARK 500 ASP A 694 78.08 -101.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 589 LEU A 590 148.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN A 472 0.16 SIDE CHAIN REMARK 500 ARG A 558 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 957 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 958 DISTANCE = 5.95 ANGSTROMS DBREF 8XEY A 400 740 UNP P51812 KS6A3_HUMAN 400 740 SEQADV 8XEY GLU A 591 UNP P51812 LYS 591 CONFLICT SEQRES 1 A 341 GLN THR VAL GLY VAL HIS SER ILE VAL GLN GLN LEU HIS SEQRES 2 A 341 ARG ASN SER ILE GLN PHE THR ASP GLY TYR GLU VAL LYS SEQRES 3 A 341 GLU ASP ILE GLY VAL GLY SER TYR SER VAL CYS LYS ARG SEQRES 4 A 341 CYS ILE HIS LYS ALA THR ASN MET GLU PHE ALA VAL LYS SEQRES 5 A 341 ILE ILE ASP LYS SER LYS ARG ASP PRO THR GLU GLU ILE SEQRES 6 A 341 GLU ILE LEU LEU ARG TYR GLY GLN HIS PRO ASN ILE ILE SEQRES 7 A 341 THR LEU LYS ASP VAL TYR ASP ASP GLY LYS TYR VAL TYR SEQRES 8 A 341 VAL VAL THR GLU LEU MET LYS GLY GLY GLU LEU LEU ASP SEQRES 9 A 341 LYS ILE LEU ARG GLN LYS PHE PHE SER GLU ARG GLU ALA SEQRES 10 A 341 SER ALA VAL LEU PHE THR ILE THR LYS THR VAL GLU TYR SEQRES 11 A 341 LEU HIS ALA GLN GLY VAL VAL HIS ARG ASP LEU LYS PRO SEQRES 12 A 341 SER ASN ILE LEU TYR VAL ASP GLU SER GLY ASN PRO GLU SEQRES 13 A 341 SER ILE ARG ILE CYS ASP PHE GLY PHE ALA LYS GLN LEU SEQRES 14 A 341 ARG ALA GLU ASN GLY LEU LEU MET THR PRO CYS TYR THR SEQRES 15 A 341 ALA ASN PHE VAL ALA PRO GLU VAL LEU GLU ARG GLN GLY SEQRES 16 A 341 TYR ASP ALA ALA CYS ASP ILE TRP SER LEU GLY VAL LEU SEQRES 17 A 341 LEU TYR THR MET LEU THR GLY TYR THR PRO PHE ALA ASN SEQRES 18 A 341 GLY PRO ASP ASP THR PRO GLU GLU ILE LEU ALA ARG ILE SEQRES 19 A 341 GLY SER GLY LYS PHE SER LEU SER GLY GLY TYR TRP ASN SEQRES 20 A 341 SER VAL SER ASP THR ALA LYS ASP LEU VAL SER LYS MET SEQRES 21 A 341 LEU HIS VAL ASP PRO HIS GLN ARG LEU THR ALA ALA LEU SEQRES 22 A 341 VAL LEU ARG HIS PRO TRP ILE VAL HIS TRP ASP GLN LEU SEQRES 23 A 341 PRO GLN TYR GLN LEU ASN ARG GLN ASP ALA PRO HIS LEU SEQRES 24 A 341 VAL LYS GLY ALA MET ALA ALA THR TYR SER ALA LEU ASN SEQRES 25 A 341 ARG ASN GLN SER PRO VAL LEU GLU PRO VAL GLY ARG SER SEQRES 26 A 341 THR LEU ALA GLN ARG ARG GLY ILE LYS LYS ILE THR SER SEQRES 27 A 341 THR ALA LEU HET EDO A 801 4 HET PEG A 802 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO C2 H6 O2 FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *58(H2 O) HELIX 1 AA1 VAL A 408 ASN A 414 5 7 HELIX 2 AA2 GLN A 417 GLY A 421 1 5 HELIX 3 AA3 PRO A 460 GLY A 471 1 12 HELIX 4 AA4 LEU A 501 ARG A 507 1 7 HELIX 5 AA5 SER A 512 GLN A 533 1 22 HELIX 6 AA6 LYS A 541 SER A 543 5 3 HELIX 7 AA7 ASN A 553 GLU A 555 5 3 HELIX 8 AA8 ALA A 570 LEU A 574 5 5 HELIX 9 AA9 LEU A 590 GLY A 614 1 25 HELIX 10 AB1 THR A 625 GLY A 636 1 12 HELIX 11 AB2 GLY A 642 SER A 647 1 6 HELIX 12 AB3 SER A 649 HIS A 661 1 13 HELIX 13 AB4 THR A 669 LEU A 674 1 6 HELIX 14 AB5 HIS A 676 HIS A 681 1 6 HELIX 15 AB6 TRP A 682 LEU A 685 5 4 HELIX 16 AB7 ALA A 695 ASN A 711 1 17 SHEET 1 AA1 5 TYR A 422 VAL A 430 0 SHEET 2 AA1 5 SER A 434 HIS A 441 -1 O ILE A 440 N GLU A 423 SHEET 3 AA1 5 GLU A 447 ASP A 454 -1 O ILE A 452 N VAL A 435 SHEET 4 AA1 5 TYR A 488 GLU A 494 -1 O THR A 493 N ALA A 449 SHEET 5 AA1 5 LEU A 479 ASP A 484 -1 N LYS A 480 O VAL A 492 SHEET 1 AA2 3 GLY A 499 GLU A 500 0 SHEET 2 AA2 3 ILE A 545 TYR A 547 -1 O TYR A 547 N GLY A 499 SHEET 3 AA2 3 ILE A 557 ILE A 559 -1 O ARG A 558 N LEU A 546 SHEET 1 AA3 2 VAL A 535 VAL A 536 0 SHEET 2 AA3 2 LYS A 566 GLN A 567 -1 O LYS A 566 N VAL A 536 SSBOND 1 CYS A 579 CYS A 579 1555 7465 2.43 CRYST1 46.513 46.513 294.070 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021499 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003401 0.00000