HEADER HYDROLASE 18-DEC-23 8XHM TITLE CRYSTAL STRUCTURE OF NOCARDIA SERIOLAE DUTP DIPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUTPASE,DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOCARDIA SERIOLAE; SOURCE 3 ORGANISM_TAXID: 37332; SOURCE 4 GENE: DUT, D6158_15615, NS07_V2CONTIG00045-0031, NS506_05871; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS NOCARDIA SERIOLAE, DUTP DIPHOSPHATASE, HYDROLASE, DUMP EXPDTA X-RAY DIFFRACTION AUTHOR J.WENG,Z.WEI REVDAT 1 13-NOV-24 8XHM 0 JRNL AUTH Z.Z.WANG,J.WENG,J.QI,X.X.FU,B.B.XING,Y.HU,C.H.HUANG, JRNL AUTH 2 C.Y.CHEN,Z.WEI JRNL TITL STRUCTURE-GUIDED DISCOVERY OF NOVEL DUTPASE INHIBITORS WITH JRNL TITL 2 ANTI- NOCARDIA ACTIVITY BY COMPUTATIONAL DESIGN. JRNL REF J ENZYME INHIB MED CHEM V. 39 11573 2024 JRNL REFN ESSN 1475-6374 JRNL PMID 39390714 JRNL DOI 10.1080/14756366.2024.2411573 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17649 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3000 - 3.8500 1.00 2989 157 0.1557 0.1767 REMARK 3 2 3.8500 - 3.0600 1.00 2817 148 0.1995 0.2069 REMARK 3 3 3.0600 - 2.6700 1.00 2773 146 0.2288 0.2478 REMARK 3 4 2.6700 - 2.4300 1.00 2752 145 0.2332 0.2777 REMARK 3 5 2.4300 - 2.2500 1.00 2733 144 0.2125 0.2184 REMARK 3 6 2.2500 - 2.1200 0.99 2703 142 0.2290 0.2621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1094 REMARK 3 ANGLE : 0.909 1489 REMARK 3 CHIRALITY : 0.064 177 REMARK 3 PLANARITY : 0.009 190 REMARK 3 DIHEDRAL : 6.404 166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XHM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043531. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 07A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17649 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.120 REMARK 200 RESOLUTION RANGE LOW (A) : 29.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 50.70 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1SIX REMARK 200 REMARK 200 REMARK: CLEAR CUBIC CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DIFFRACTABLE CRYSTALS GREW IN 25% REMARK 280 (W/V) POLYETHYLENE GLYCOL 3350, 0.1 M TRIS-HCL PH 8.5 AT 293 K., REMARK 280 VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 60.40350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.40350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 60.40350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.40350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 60.40350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 60.40350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 60.40350 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 60.40350 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 60.40350 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 60.40350 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 60.40350 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 60.40350 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 60.40350 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 60.40350 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 60.40350 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 60.40350 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 60.40350 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 60.40350 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 90.60525 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 30.20175 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 30.20175 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 90.60525 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 90.60525 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 90.60525 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 30.20175 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 30.20175 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 90.60525 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 30.20175 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 90.60525 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 30.20175 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 90.60525 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 30.20175 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 30.20175 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 30.20175 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 90.60525 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 30.20175 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 90.60525 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 90.60525 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 90.60525 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 30.20175 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 30.20175 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 90.60525 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 90.60525 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 30.20175 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 30.20175 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 30.20175 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 30.20175 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 90.60525 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 30.20175 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 90.60525 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 30.20175 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 90.60525 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 90.60525 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 90.60525 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 P PO4 A 302 LIES ON A SPECIAL POSITION. REMARK 375 O4 PO4 A 302 LIES ON A SPECIAL POSITION. REMARK 375 C TRS A 306 LIES ON A SPECIAL POSITION. REMARK 375 C2 TRS A 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 443 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 445 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 SER A 144 REMARK 465 SER A 145 REMARK 465 GLY A 146 REMARK 465 GLY A 147 REMARK 465 HIS A 148 REMARK 465 ALA A 149 REMARK 465 SER A 150 REMARK 465 LEU A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 153 REMARK 465 GLN A 154 REMARK 465 SER A 155 REMARK 465 GLY A 156 REMARK 465 GLY A 157 REMARK 465 ALA A 158 REMARK 465 GLY A 159 REMARK 465 GLN A 160 REMARK 465 ALA A 161 REMARK 465 THR A 162 REMARK 465 GLY A 163 REMARK 465 LYS A 164 REMARK 465 GLU A 165 REMARK 465 ALA A 166 REMARK 465 GLY A 167 REMARK 465 GLY A 168 REMARK 465 GLY A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 LEU A 172 REMARK 465 GLU A 173 REMARK 465 VAL A 174 REMARK 465 LEU A 175 REMARK 465 PHE A 176 REMARK 465 GLN A 177 REMARK 465 GLY A 178 REMARK 465 PRO A 179 REMARK 465 GLY A 180 REMARK 465 GLY A 181 REMARK 465 GLY A 182 REMARK 465 GLY A 183 REMARK 465 SER A 184 REMARK 465 LEU A 185 REMARK 465 GLU A 186 REMARK 465 VAL A 187 REMARK 465 ASP A 188 REMARK 465 HIS A 189 REMARK 465 HIS A 190 REMARK 465 HIS A 191 REMARK 465 HIS A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 TRS A 303 O HOH A 401 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 TRS A 303 DBREF1 8XHM A 1 166 UNP A0A0B8NBT7_9NOCA DBREF2 8XHM A A0A0B8NBT7 1 166 SEQADV 8XHM GLY A 167 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 168 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 169 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 170 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM SER A 171 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM LEU A 172 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLU A 173 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM VAL A 174 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM LEU A 175 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM PHE A 176 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLN A 177 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 178 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM PRO A 179 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 180 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 181 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 182 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLY A 183 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM SER A 184 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM LEU A 185 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM GLU A 186 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM VAL A 187 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM ASP A 188 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM HIS A 189 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM HIS A 190 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM HIS A 191 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM HIS A 192 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM HIS A 193 UNP A0A0B8NBT EXPRESSION TAG SEQADV 8XHM HIS A 194 UNP A0A0B8NBT EXPRESSION TAG SEQRES 1 A 194 MET THR GLY ILE PRO PRO ILE PRO LEU LEU ARG LEU ASP SEQRES 2 A 194 PRO GLY ILE PRO VAL PRO VAL ARG ALA HIS GLU GLY ASP SEQRES 3 A 194 ALA GLY VAL ASP LEU CYS THR THR GLU ASP VAL ILE ILE SEQRES 4 A 194 GLU PRO GLY GLU ARG VAL LEU VAL GLY THR GLY ILE ALA SEQRES 5 A 194 VAL ALA LEU PRO ILE GLY THR VAL GLY LEU ILE HIS PRO SEQRES 6 A 194 ARG SER GLY LEU ALA ALA LYS ALA GLY LEU SER VAL VAL SEQRES 7 A 194 ASN THR PRO GLY THR VAL ASP ALA GLY TYR ARG GLY GLU SEQRES 8 A 194 ILE LYS VAL CYS LEU ILE ASN HIS ASP PRO ARG ALA ALA SEQRES 9 A 194 ILE GLU LEU ARG ARG GLY ASP ARG ILE ALA GLN LEU LEU SEQRES 10 A 194 VAL GLN LYS VAL GLU LEU VAL ASP PHE VAL GLU VAL GLU SEQRES 11 A 194 THR LEU ASP GLU THR ALA ARG GLY ALA GLY GLY TYR GLY SEQRES 12 A 194 SER SER GLY GLY HIS ALA SER LEU ALA ALA GLN SER GLY SEQRES 13 A 194 GLY ALA GLY GLN ALA THR GLY LYS GLU ALA GLY GLY GLY SEQRES 14 A 194 GLY SER LEU GLU VAL LEU PHE GLN GLY PRO GLY GLY GLY SEQRES 15 A 194 GLY SER LEU GLU VAL ASP HIS HIS HIS HIS HIS HIS HET UMP A 301 20 HET PO4 A 302 5 HET TRS A 303 8 HET PEG A 304 7 HET PEG A 305 7 HET TRS A 306 8 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN UMP DUMP HETSYN TRS TRIS BUFFER FORMUL 2 UMP C9 H13 N2 O8 P FORMUL 3 PO4 O4 P 3- FORMUL 4 TRS 2(C4 H12 N O3 1+) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 8 HOH *45(H2 O) HELIX 1 AA1 ARG A 66 GLY A 74 1 9 SHEET 1 AA1 2 LEU A 9 ARG A 11 0 SHEET 2 AA1 2 ILE A 51 VAL A 53 -1 O ALA A 52 N LEU A 10 SHEET 1 AA2 4 GLY A 28 CYS A 32 0 SHEET 2 AA2 4 ARG A 112 LYS A 120 -1 O LEU A 116 N VAL A 29 SHEET 3 AA2 4 THR A 59 PRO A 65 -1 N HIS A 64 O GLN A 115 SHEET 4 AA2 4 GLY A 82 VAL A 84 -1 O VAL A 84 N GLY A 61 SHEET 1 AA3 2 VAL A 37 ILE A 39 0 SHEET 2 AA3 2 ILE A 105 LEU A 107 -1 O ILE A 105 N ILE A 39 SHEET 1 AA4 3 ARG A 44 GLY A 48 0 SHEET 2 AA4 3 LYS A 93 ASN A 98 -1 O VAL A 94 N VAL A 47 SHEET 3 AA4 3 LEU A 75 VAL A 77 -1 N SER A 76 O ILE A 97 CISPEP 1 THR A 80 PRO A 81 0 -7.39 CRYST1 120.807 120.807 120.807 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008278 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008278 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008278 0.00000 CONECT 1029 1030 1034 1037 CONECT 1030 1029 1031 1035 CONECT 1031 1030 1032 CONECT 1032 1031 1033 1036 CONECT 1033 1032 1034 CONECT 1034 1029 1033 CONECT 1035 1030 CONECT 1036 1032 CONECT 1037 1029 1038 1042 CONECT 1038 1037 1039 CONECT 1039 1038 1040 1041 CONECT 1040 1039 1042 1043 CONECT 1041 1039 CONECT 1042 1037 1040 CONECT 1043 1040 1044 CONECT 1044 1043 1045 CONECT 1045 1044 1046 1047 1048 CONECT 1046 1045 CONECT 1047 1045 CONECT 1048 1045 CONECT 1049 1050 1051 1052 1053 CONECT 1050 1049 CONECT 1051 1049 CONECT 1052 1049 CONECT 1053 1049 CONECT 1054 1055 1056 1057 1058 CONECT 1055 1054 1059 CONECT 1056 1054 1060 CONECT 1057 1054 1061 CONECT 1058 1054 CONECT 1059 1055 CONECT 1060 1056 CONECT 1061 1057 CONECT 1062 1063 1064 CONECT 1063 1062 CONECT 1064 1062 1065 CONECT 1065 1064 1066 CONECT 1066 1065 1067 CONECT 1067 1066 1068 CONECT 1068 1067 CONECT 1069 1070 1071 CONECT 1070 1069 CONECT 1071 1069 1072 CONECT 1072 1071 1073 CONECT 1073 1072 1074 CONECT 1074 1073 1075 CONECT 1075 1074 CONECT 1076 1077 1078 1079 1080 CONECT 1077 1076 1081 CONECT 1078 1076 1082 CONECT 1079 1076 1083 CONECT 1080 1076 CONECT 1081 1077 CONECT 1082 1078 CONECT 1083 1079 MASTER 376 0 6 1 11 0 0 6 1127 1 55 15 END