HEADER FLUORESCENT PROTEIN 25-DEC-23 8XLD TITLE STRUCTURE OF THE GFP:GFP-NANOBODY COMPLEX FROM BIORTUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAYGOLD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NANOBODY(STAYGOLD-S2G10)-NANOBODY(STAYGOLD-S4F1); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTAEIS UCHIDAE; SOURCE 3 ORGANISM_TAXID: 1254443; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 9 ORGANISM_TAXID: 32630; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,W.CHENG,Z.YUAN,D.LIN,C.BAO REVDAT 1 06-MAR-24 8XLD 0 JRNL AUTH F.WANG,W.CHENG,Z.YUAN,D.LIN,C.BAO JRNL TITL STRUCTURE OF THE GFP:GFP-NANOBODY COMPLEX FROM BIORTUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25322 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.004 REMARK 3 FREE R VALUE TEST SET COUNT : 1267 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1742 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2618 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 247 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.10400 REMARK 3 B22 (A**2) : 1.09900 REMARK 3 B33 (A**2) : -3.20400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2714 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2430 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3675 ; 1.634 ; 1.665 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5630 ; 1.332 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 8.062 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;32.665 ;23.284 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 429 ;15.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.897 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3098 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 622 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 498 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 56 ; 0.212 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1272 ; 0.172 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 199 ; 0.169 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1329 ; 3.102 ; 3.674 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1328 ; 3.100 ; 3.671 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1657 ; 4.714 ; 5.495 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1658 ; 4.713 ; 5.498 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1385 ; 3.887 ; 4.010 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1386 ; 3.886 ; 4.011 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2016 ; 5.923 ; 5.855 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2017 ; 5.921 ; 5.857 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8XLD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953729 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25324 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 44.221 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.08300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NA2SO4, 0.1M BIS-TRIS PROPANE REMARK 280 PH6.5, 20% PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.27200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.18150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.42100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.27200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.18150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.42100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.27200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.18150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.42100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.27200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.18150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.42100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 556 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 GLY B 123 REMARK 465 SER B 124 REMARK 465 GLY B 125 REMARK 465 GLY B 126 REMARK 465 GLY B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 465 GLY B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 133 REMARK 465 SER B 134 REMARK 465 GLY B 135 REMARK 465 GLY B 136 REMARK 465 GLY B 137 REMARK 465 GLY B 138 REMARK 465 SER B 139 REMARK 465 GLY B 140 REMARK 465 GLY B 141 REMARK 465 GLY B 142 REMARK 465 GLY B 143 REMARK 465 SER B 144 REMARK 465 GLY B 145 REMARK 465 GLY B 146 REMARK 465 GLY B 147 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 GLY B 150 REMARK 465 GLY B 151 REMARK 465 GLY B 152 REMARK 465 GLY B 153 REMARK 465 SER B 154 REMARK 465 GLN B 155 REMARK 465 VAL B 156 REMARK 465 GLN B 157 REMARK 465 LEU B 158 REMARK 465 VAL B 159 REMARK 465 GLU B 160 REMARK 465 SER B 161 REMARK 465 GLY B 162 REMARK 465 GLY B 163 REMARK 465 GLY B 164 REMARK 465 LEU B 165 REMARK 465 VAL B 166 REMARK 465 GLN B 167 REMARK 465 ALA B 168 REMARK 465 GLY B 169 REMARK 465 GLY B 170 REMARK 465 SER B 171 REMARK 465 LEU B 172 REMARK 465 ARG B 173 REMARK 465 LEU B 174 REMARK 465 SER B 175 REMARK 465 CYS B 176 REMARK 465 ALA B 177 REMARK 465 ALA B 178 REMARK 465 SER B 179 REMARK 465 GLY B 180 REMARK 465 ILE B 181 REMARK 465 ILE B 182 REMARK 465 PHE B 183 REMARK 465 GLY B 184 REMARK 465 SER B 185 REMARK 465 TYR B 186 REMARK 465 ALA B 187 REMARK 465 MET B 188 REMARK 465 GLY B 189 REMARK 465 TRP B 190 REMARK 465 TYR B 191 REMARK 465 ARG B 192 REMARK 465 GLN B 193 REMARK 465 ALA B 194 REMARK 465 PRO B 195 REMARK 465 GLY B 196 REMARK 465 LYS B 197 REMARK 465 GLU B 198 REMARK 465 ARG B 199 REMARK 465 GLU B 200 REMARK 465 LEU B 201 REMARK 465 VAL B 202 REMARK 465 ALA B 203 REMARK 465 ALA B 204 REMARK 465 ILE B 205 REMARK 465 SER B 206 REMARK 465 ILE B 207 REMARK 465 SER B 208 REMARK 465 THR B 209 REMARK 465 THR B 210 REMARK 465 THR B 211 REMARK 465 THR B 212 REMARK 465 TYR B 213 REMARK 465 TYR B 214 REMARK 465 ALA B 215 REMARK 465 ASP B 216 REMARK 465 SER B 217 REMARK 465 VAL B 218 REMARK 465 LYS B 219 REMARK 465 GLY B 220 REMARK 465 ARG B 221 REMARK 465 PHE B 222 REMARK 465 THR B 223 REMARK 465 ILE B 224 REMARK 465 SER B 225 REMARK 465 ARG B 226 REMARK 465 ASP B 227 REMARK 465 ASN B 228 REMARK 465 ALA B 229 REMARK 465 LYS B 230 REMARK 465 ASN B 231 REMARK 465 THR B 232 REMARK 465 VAL B 233 REMARK 465 TYR B 234 REMARK 465 LEU B 235 REMARK 465 GLN B 236 REMARK 465 MET B 237 REMARK 465 ASN B 238 REMARK 465 SER B 239 REMARK 465 LEU B 240 REMARK 465 LYS B 241 REMARK 465 PRO B 242 REMARK 465 GLU B 243 REMARK 465 ASP B 244 REMARK 465 THR B 245 REMARK 465 ALA B 246 REMARK 465 VAL B 247 REMARK 465 TYR B 248 REMARK 465 TYR B 249 REMARK 465 CYS B 250 REMARK 465 ASN B 251 REMARK 465 ALA B 252 REMARK 465 VAL B 253 REMARK 465 SER B 254 REMARK 465 TYR B 255 REMARK 465 GLY B 256 REMARK 465 GLY B 257 REMARK 465 LEU B 258 REMARK 465 ASP B 259 REMARK 465 TYR B 260 REMARK 465 TRP B 261 REMARK 465 GLY B 262 REMARK 465 GLN B 263 REMARK 465 GLY B 264 REMARK 465 THR B 265 REMARK 465 GLN B 266 REMARK 465 VAL B 267 REMARK 465 THR B 268 REMARK 465 VAL B 269 REMARK 465 SER B 270 REMARK 465 SER B 271 REMARK 465 GLY B 272 REMARK 465 SER B 273 REMARK 465 HIS B 274 REMARK 465 HIS B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 GLY B 280 REMARK 465 GLY B 281 REMARK 465 SER B 282 REMARK 465 GLY B 283 REMARK 465 GLY B 284 REMARK 465 SER B 285 REMARK 465 GLY B 286 REMARK 465 GLY B 287 REMARK 465 SER B 288 REMARK 465 CYS B 289 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 15 56.49 39.93 REMARK 500 ASP A 184 53.27 -94.22 REMARK 500 ALA B 14 138.36 -39.41 REMARK 500 ALA B 49 143.03 -170.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 85 OD1 REMARK 620 2 HIS A 87 NE2 105.6 REMARK 620 3 HIS A 97 NE2 104.7 99.9 REMARK 620 4 ASP A 119 OD1 138.6 64.2 45.1 REMARK 620 5 ASP A 119 OD2 139.8 57.9 51.4 6.7 REMARK 620 N 1 2 3 4 DBREF 8XLD A -1 217 PDB 8XLD 8XLD -1 217 DBREF 8XLD B 1 289 PDB 8XLD 8XLD 1 289 SEQRES 1 A 217 GLY GLY MET ALA SER THR PRO PHE LYS PHE GLN LEU LYS SEQRES 2 A 217 GLY THR ILE ASN GLY LYS SER PHE THR VAL GLU GLY GLU SEQRES 3 A 217 GLY GLU GLY ASN SER HIS GLU GLY SER HIS LYS GLY LYS SEQRES 4 A 217 TYR VAL CYS THR SER GLY LYS LEU PRO MET SER TRP ALA SEQRES 5 A 217 ALA LEU GLY THR SER PHE CR2 MET LYS TYR TYR THR LYS SEQRES 6 A 217 TYR PRO SER GLY LEU LYS ASN TRP PHE HIS GLU VAL MET SEQRES 7 A 217 PRO GLU GLY PHE THR TYR ASP ARG HIS ILE GLN TYR LYS SEQRES 8 A 217 GLY ASP GLY SER ILE HIS ALA LYS HIS GLN HIS PHE MET SEQRES 9 A 217 LYS ASN GLY THR TYR HIS ASN ILE VAL GLU PHE THR GLY SEQRES 10 A 217 GLN ASP PHE LYS GLU ASN SER PRO VAL LEU THR GLY ASP SEQRES 11 A 217 MET ASN VAL SER LEU PRO ALA GLU VAL SER HIS ILE PRO SEQRES 12 A 217 ARG ASP ASP GLY VAL GLU CYS PRO VAL THR LEU LEU TYR SEQRES 13 A 217 PRO LEU LEU SER ASP LYS SER LYS CYS VAL GLU ALA HIS SEQRES 14 A 217 GLN ASN THR ILE CYS LYS PRO LEU HIS ASN GLN PRO ALA SEQRES 15 A 217 PRO ASP VAL PRO PHE HIS TRP ILE ARG LYS GLN TYR THR SEQRES 16 A 217 GLN SER LYS ASP ASP THR GLU GLU ARG ASP HIS ILE CYS SEQRES 17 A 217 GLN SER GLU THR LEU GLU ALA HIS LEU SEQRES 1 B 289 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 289 ALA GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 289 LEU THR PHE PRO ALA TYR ALA MET GLY TRP TYR ARG GLN SEQRES 4 B 289 ALA PRO GLY LYS GLU ARG GLU LEU VAL ALA ALA ILE THR SEQRES 5 B 289 GLY ASP GLY SER THR ASN TYR ALA ASP SER VAL LYS GLY SEQRES 6 B 289 ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL SEQRES 7 B 289 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 B 289 VAL TYR TYR CYS ALA ALA ASP ARG TYR VAL PRO ALA PRO SEQRES 9 B 289 PRO TYR TYR TYR TRP GLY GLN GLY THR GLN VAL THR VAL SEQRES 10 B 289 SER SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY SEQRES 11 B 289 GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY GLY SEQRES 12 B 289 SER GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLN VAL SEQRES 13 B 289 GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN ALA GLY SEQRES 14 B 289 GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY ILE ILE SEQRES 15 B 289 PHE GLY SER TYR ALA MET GLY TRP TYR ARG GLN ALA PRO SEQRES 16 B 289 GLY LYS GLU ARG GLU LEU VAL ALA ALA ILE SER ILE SER SEQRES 17 B 289 THR THR THR THR TYR TYR ALA ASP SER VAL LYS GLY ARG SEQRES 18 B 289 PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR VAL TYR SEQRES 19 B 289 LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA VAL SEQRES 20 B 289 TYR TYR CYS ASN ALA VAL SER TYR GLY GLY LEU ASP TYR SEQRES 21 B 289 TRP GLY GLN GLY THR GLN VAL THR VAL SER SER GLY SER SEQRES 22 B 289 HIS HIS HIS HIS HIS HIS GLY GLY SER GLY GLY SER GLY SEQRES 23 B 289 GLY SER CYS HET CR2 A 58 19 HET EDO A 301 4 HET ZN A 302 1 HET EDO B 301 4 HET EDO B 302 4 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM ZN ZINC ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CR2 C13 H13 N3 O4 FORMUL 3 EDO 3(C2 H6 O2) FORMUL 4 ZN ZN 2+ FORMUL 7 HOH *247(H2 O) HELIX 1 AA1 TRP A 49 GLY A 53 5 5 HELIX 2 AA2 MET A 60 THR A 64 5 5 HELIX 3 AA3 ASN A 72 VAL A 77 1 6 HELIX 4 AA4 SER A 124 GLY A 129 1 6 HELIX 5 AA5 LYS B 86 THR B 90 5 5 SHEET 1 AA112 THR A 4 ILE A 14 0 SHEET 2 AA112 LYS A 17 ASN A 28 -1 O PHE A 19 N GLY A 12 SHEET 3 AA112 SER A 33 CYS A 40 -1 O VAL A 39 N GLU A 22 SHEET 4 AA112 HIS A 206 HIS A 216 -1 O ILE A 207 N TYR A 38 SHEET 5 AA112 HIS A 188 SER A 197 -1 N SER A 197 O CYS A 208 SHEET 6 AA112 ALA A 137 ARG A 144 -1 N VAL A 139 O ILE A 190 SHEET 7 AA112 GLY A 147 PRO A 157 -1 O GLU A 149 N ILE A 142 SHEET 8 AA112 CYS A 165 PRO A 176 -1 O CYS A 174 N VAL A 148 SHEET 9 AA112 PHE A 82 TYR A 90 -1 N GLN A 89 O HIS A 169 SHEET 10 AA112 SER A 95 LYS A 105 -1 O ALA A 98 N ARG A 86 SHEET 11 AA112 THR A 108 GLN A 118 -1 O THR A 116 N HIS A 97 SHEET 12 AA112 THR A 4 ILE A 14 1 N GLN A 9 O VAL A 113 SHEET 1 AA2 4 GLN B 3 SER B 7 0 SHEET 2 AA2 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 AA2 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 AA2 4 PHE B 67 ARG B 71 -1 N SER B 70 O TYR B 79 SHEET 1 AA3 6 GLY B 10 GLN B 13 0 SHEET 2 AA3 6 THR B 113 SER B 118 1 O THR B 116 N GLY B 10 SHEET 3 AA3 6 ALA B 91 ASP B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA3 6 ALA B 33 GLN B 39 -1 N TYR B 37 O TYR B 94 SHEET 5 AA3 6 GLU B 46 ILE B 51 -1 O ALA B 49 N TRP B 36 SHEET 6 AA3 6 THR B 57 TYR B 59 -1 O ASN B 58 N ALA B 50 SHEET 1 AA4 4 GLY B 10 GLN B 13 0 SHEET 2 AA4 4 THR B 113 SER B 118 1 O THR B 116 N GLY B 10 SHEET 3 AA4 4 ALA B 91 ASP B 98 -1 N ALA B 91 O VAL B 115 SHEET 4 AA4 4 TYR B 108 TRP B 109 -1 O TYR B 108 N ALA B 97 SSBOND 1 CYS B 22 CYS B 95 1555 1555 2.08 LINK C PHE A 56 N1 CR2 A 58 1555 1555 1.30 LINK C3 CR2 A 58 N MET A 60 1555 1555 1.29 LINK OD1 ASP A 85 ZN ZN A 302 1555 1555 1.99 LINK NE2 HIS A 87 ZN ZN A 302 1555 1555 1.95 LINK NE2 HIS A 97 ZN ZN A 302 1555 1555 1.97 LINK OD1 ASP A 119 ZN ZN A 302 1555 3555 2.52 LINK OD2 ASP A 119 ZN ZN A 302 1555 3555 2.06 CISPEP 1 MET A 78 PRO A 79 0 4.07 CISPEP 2 VAL B 101 PRO B 102 0 -4.01 CISPEP 3 ALA B 103 PRO B 104 0 2.38 CISPEP 4 PRO B 104 PRO B 105 0 4.58 CRYST1 78.544 88.363 122.842 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012732 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011317 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008141 0.00000