data_8XO3 # _entry.id 8XO3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8XO3 pdb_00008xo3 10.2210/pdb8xo3/pdb WWPDB D_1300043873 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-01-01 ? 2 'Structure model' 1 1 2025-03-05 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8XO3 _pdbx_database_status.recvd_initial_deposition_date 2023-12-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8XNE unspecified PDB . 8XO2 unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email soishi@mb.kyoto-phu.ac.jp _pdbx_contact_author.name_first Shinya _pdbx_contact_author.name_last Oishi _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-2833-2539 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Oishi, S.' 1 0000-0002-2833-2539 'Takahara, A.' 2 0000-0002-4658-0181 'Nakatsu, T.' 3 0000-0002-9582-4023 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev J.Med.Chem. _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 0022-2623 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 68 _citation.language ? _citation.page_first 3123 _citation.page_last 3133 _citation.title 'Elucidation of Postfusion Structures of the Measles Virus F Protein for the Structure-Based Design of Fusion Inhibitors.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.4c02337 _citation.pdbx_database_id_PubMed 39887040 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Takahara, A.' 1 ? primary 'Nakatsu, T.' 2 ? primary 'Hirata, K.' 3 ? primary 'Hayashi, H.' 4 ? primary 'Kawaji, K.' 5 ? primary 'Aoki, K.' 6 ? primary 'Inuki, S.' 7 0000-0002-7525-1280 primary 'Ohno, H.' 8 0000-0002-3246-4809 primary 'Kato, H.' 9 ? primary 'Kodama, E.' 10 ? primary 'Oishi, S.' 11 0000-0002-2833-2539 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Fusion glycoprotein F1' 5225.786 1 ? ? ? ? 2 polymer syn 'Fusion glycoprotein F1' 3840.322 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 water nat water 18.015 110 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes '(ACE)HQSMLNSQAIDNLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINN(NH2)' XHQSMLNSQAIDNLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINNX A ? 2 'polypeptide(L)' no yes '(ACE)ISLERLDVGTNLGNAIAKLEDAKELLESSDQILRS(NH2)' XISLERLDVGTNLGNAIAKLEDAKELLESSDQILRSX B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 HIS n 1 3 GLN n 1 4 SER n 1 5 MET n 1 6 LEU n 1 7 ASN n 1 8 SER n 1 9 GLN n 1 10 ALA n 1 11 ILE n 1 12 ASP n 1 13 ASN n 1 14 LEU n 1 15 ARG n 1 16 ALA n 1 17 SER n 1 18 LEU n 1 19 GLU n 1 20 THR n 1 21 THR n 1 22 ASN n 1 23 GLN n 1 24 ALA n 1 25 ILE n 1 26 GLU n 1 27 ALA n 1 28 ILE n 1 29 ARG n 1 30 GLN n 1 31 ALA n 1 32 GLY n 1 33 GLN n 1 34 GLU n 1 35 MET n 1 36 ILE n 1 37 LEU n 1 38 ALA n 1 39 VAL n 1 40 GLN n 1 41 GLY n 1 42 VAL n 1 43 GLN n 1 44 ASP n 1 45 TYR n 1 46 ILE n 1 47 ASN n 1 48 ASN n 1 49 NH2 n 2 1 ACE n 2 2 ILE n 2 3 SER n 2 4 LEU n 2 5 GLU n 2 6 ARG n 2 7 LEU n 2 8 ASP n 2 9 VAL n 2 10 GLY n 2 11 THR n 2 12 ASN n 2 13 LEU n 2 14 GLY n 2 15 ASN n 2 16 ALA n 2 17 ILE n 2 18 ALA n 2 19 LYS n 2 20 LEU n 2 21 GLU n 2 22 ASP n 2 23 ALA n 2 24 LYS n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 GLU n 2 29 SER n 2 30 SER n 2 31 ASP n 2 32 GLN n 2 33 ILE n 2 34 LEU n 2 35 ARG n 2 36 SER n 2 37 NH2 n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 49 'Measles virus strain Edmonston' ? 11235 ? 2 1 sample 1 37 'Measles virus strain Edmonston' ? 11235 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 137 137 ACE ACE A . n A 1 2 HIS 2 138 138 HIS HIS A . n A 1 3 GLN 3 139 139 GLN GLN A . n A 1 4 SER 4 140 140 SER SER A . n A 1 5 MET 5 141 141 MET MET A . n A 1 6 LEU 6 142 142 LEU LEU A . n A 1 7 ASN 7 143 143 ASN ASN A . n A 1 8 SER 8 144 144 SER SER A . n A 1 9 GLN 9 145 145 GLN GLN A . n A 1 10 ALA 10 146 146 ALA ALA A . n A 1 11 ILE 11 147 147 ILE ILE A . n A 1 12 ASP 12 148 148 ASP ASP A . n A 1 13 ASN 13 149 149 ASN ASN A . n A 1 14 LEU 14 150 150 LEU LEU A . n A 1 15 ARG 15 151 151 ARG ARG A . n A 1 16 ALA 16 152 152 ALA ALA A . n A 1 17 SER 17 153 153 SER SER A . n A 1 18 LEU 18 154 154 LEU LEU A . n A 1 19 GLU 19 155 155 GLU GLU A . n A 1 20 THR 20 156 156 THR THR A . n A 1 21 THR 21 157 157 THR THR A . n A 1 22 ASN 22 158 158 ASN ASN A . n A 1 23 GLN 23 159 159 GLN GLN A . n A 1 24 ALA 24 160 160 ALA ALA A . n A 1 25 ILE 25 161 161 ILE ILE A . n A 1 26 GLU 26 162 162 GLU GLU A . n A 1 27 ALA 27 163 163 ALA ALA A . n A 1 28 ILE 28 164 164 ILE ILE A . n A 1 29 ARG 29 165 165 ARG ARG A . n A 1 30 GLN 30 166 166 GLN GLN A . n A 1 31 ALA 31 167 167 ALA ALA A . n A 1 32 GLY 32 168 168 GLY GLY A . n A 1 33 GLN 33 169 169 GLN GLN A . n A 1 34 GLU 34 170 170 GLU GLU A . n A 1 35 MET 35 171 171 MET MET A . n A 1 36 ILE 36 172 172 ILE ILE A . n A 1 37 LEU 37 173 173 LEU LEU A . n A 1 38 ALA 38 174 174 ALA ALA A . n A 1 39 VAL 39 175 175 VAL VAL A . n A 1 40 GLN 40 176 176 GLN GLN A . n A 1 41 GLY 41 177 177 GLY GLY A . n A 1 42 VAL 42 178 178 VAL VAL A . n A 1 43 GLN 43 179 179 GLN GLN A . n A 1 44 ASP 44 180 180 ASP ASP A . n A 1 45 TYR 45 181 181 TYR TYR A . n A 1 46 ILE 46 182 182 ILE ILE A . n A 1 47 ASN 47 183 183 ASN ASN A . n A 1 48 ASN 48 184 184 ASN ASN A . n A 1 49 NH2 49 185 185 NH2 NH2 A . n B 2 1 ACE 1 451 451 ACE ACE B . n B 2 2 ILE 2 452 452 ILE ILE B . n B 2 3 SER 3 453 453 SER SER B . n B 2 4 LEU 4 454 454 LEU LEU B . n B 2 5 GLU 5 455 455 GLU GLU B . n B 2 6 ARG 6 456 456 ARG ARG B . n B 2 7 LEU 7 457 457 LEU LEU B . n B 2 8 ASP 8 458 458 ASP ASP B . n B 2 9 VAL 9 459 459 VAL VAL B . n B 2 10 GLY 10 460 460 GLY GLY B . n B 2 11 THR 11 461 461 THR THR B . n B 2 12 ASN 12 462 462 ASN ASN B . n B 2 13 LEU 13 463 463 LEU LEU B . n B 2 14 GLY 14 464 464 GLY GLY B . n B 2 15 ASN 15 465 465 ASN ASN B . n B 2 16 ALA 16 466 466 ALA ALA B . n B 2 17 ILE 17 467 467 ILE ILE B . n B 2 18 ALA 18 468 468 ALA ALA B . n B 2 19 LYS 19 469 469 LYS LYS B . n B 2 20 LEU 20 470 470 LEU LEU B . n B 2 21 GLU 21 471 471 GLU GLU B . n B 2 22 ASP 22 472 472 ASP ASP B . n B 2 23 ALA 23 473 473 ALA ALA B . n B 2 24 LYS 24 474 474 LYS LYS B . n B 2 25 GLU 25 475 475 GLU GLU B . n B 2 26 LEU 26 476 476 LEU LEU B . n B 2 27 LEU 27 477 477 LEU LEU B . n B 2 28 GLU 28 478 478 GLU GLU B . n B 2 29 SER 29 479 479 SER SER B . n B 2 30 SER 30 480 480 SER SER B . n B 2 31 ASP 31 481 481 ASP ASP B . n B 2 32 GLN 32 482 482 GLN GLN B . n B 2 33 ILE 33 483 483 ILE ILE B . n B 2 34 LEU 34 484 484 LEU LEU B . n B 2 35 ARG 35 485 485 ARG ARG B . n B 2 36 SER 36 486 486 SER SER B . n B 2 37 NH2 37 487 487 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 501 1 CA CA B . D 4 HOH 1 201 68 HOH HOH A . D 4 HOH 2 202 109 HOH HOH A . D 4 HOH 3 203 32 HOH HOH A . D 4 HOH 4 204 82 HOH HOH A . D 4 HOH 5 205 94 HOH HOH A . D 4 HOH 6 206 41 HOH HOH A . D 4 HOH 7 207 20 HOH HOH A . D 4 HOH 8 208 108 HOH HOH A . D 4 HOH 9 209 35 HOH HOH A . D 4 HOH 10 210 64 HOH HOH A . D 4 HOH 11 211 22 HOH HOH A . D 4 HOH 12 212 2 HOH HOH A . D 4 HOH 13 213 4 HOH HOH A . D 4 HOH 14 214 52 HOH HOH A . D 4 HOH 15 215 21 HOH HOH A . D 4 HOH 16 216 1 HOH HOH A . D 4 HOH 17 217 5 HOH HOH A . D 4 HOH 18 218 25 HOH HOH A . D 4 HOH 19 219 86 HOH HOH A . D 4 HOH 20 220 31 HOH HOH A . D 4 HOH 21 221 95 HOH HOH A . D 4 HOH 22 222 72 HOH HOH A . D 4 HOH 23 223 8 HOH HOH A . D 4 HOH 24 224 7 HOH HOH A . D 4 HOH 25 225 9 HOH HOH A . D 4 HOH 26 226 97 HOH HOH A . D 4 HOH 27 227 19 HOH HOH A . D 4 HOH 28 228 28 HOH HOH A . D 4 HOH 29 229 6 HOH HOH A . D 4 HOH 30 230 13 HOH HOH A . D 4 HOH 31 231 10 HOH HOH A . D 4 HOH 32 232 34 HOH HOH A . D 4 HOH 33 233 88 HOH HOH A . D 4 HOH 34 234 56 HOH HOH A . D 4 HOH 35 235 77 HOH HOH A . D 4 HOH 36 236 55 HOH HOH A . D 4 HOH 37 237 93 HOH HOH A . D 4 HOH 38 238 40 HOH HOH A . D 4 HOH 39 239 66 HOH HOH A . D 4 HOH 40 240 37 HOH HOH A . D 4 HOH 41 241 87 HOH HOH A . D 4 HOH 42 242 104 HOH HOH A . D 4 HOH 43 243 27 HOH HOH A . D 4 HOH 44 244 33 HOH HOH A . D 4 HOH 45 245 99 HOH HOH A . D 4 HOH 46 246 53 HOH HOH A . D 4 HOH 47 247 60 HOH HOH A . D 4 HOH 48 248 24 HOH HOH A . D 4 HOH 49 249 92 HOH HOH A . D 4 HOH 50 250 74 HOH HOH A . D 4 HOH 51 251 89 HOH HOH A . D 4 HOH 52 252 76 HOH HOH A . D 4 HOH 53 253 43 HOH HOH A . E 4 HOH 1 601 70 HOH HOH B . E 4 HOH 2 602 84 HOH HOH B . E 4 HOH 3 603 58 HOH HOH B . E 4 HOH 4 604 61 HOH HOH B . E 4 HOH 5 605 18 HOH HOH B . E 4 HOH 6 606 62 HOH HOH B . E 4 HOH 7 607 44 HOH HOH B . E 4 HOH 8 608 81 HOH HOH B . E 4 HOH 9 609 29 HOH HOH B . E 4 HOH 10 610 46 HOH HOH B . E 4 HOH 11 611 54 HOH HOH B . E 4 HOH 12 612 110 HOH HOH B . E 4 HOH 13 613 78 HOH HOH B . E 4 HOH 14 614 83 HOH HOH B . E 4 HOH 15 615 69 HOH HOH B . E 4 HOH 16 616 65 HOH HOH B . E 4 HOH 17 617 80 HOH HOH B . E 4 HOH 18 618 51 HOH HOH B . E 4 HOH 19 619 14 HOH HOH B . E 4 HOH 20 620 26 HOH HOH B . E 4 HOH 21 621 90 HOH HOH B . E 4 HOH 22 622 103 HOH HOH B . E 4 HOH 23 623 102 HOH HOH B . E 4 HOH 24 624 3 HOH HOH B . E 4 HOH 25 625 63 HOH HOH B . E 4 HOH 26 626 12 HOH HOH B . E 4 HOH 27 627 73 HOH HOH B . E 4 HOH 28 628 67 HOH HOH B . E 4 HOH 29 629 11 HOH HOH B . E 4 HOH 30 630 15 HOH HOH B . E 4 HOH 31 631 101 HOH HOH B . E 4 HOH 32 632 50 HOH HOH B . E 4 HOH 33 633 105 HOH HOH B . E 4 HOH 34 634 17 HOH HOH B . E 4 HOH 35 635 23 HOH HOH B . E 4 HOH 36 636 59 HOH HOH B . E 4 HOH 37 637 106 HOH HOH B . E 4 HOH 38 638 16 HOH HOH B . E 4 HOH 39 639 71 HOH HOH B . E 4 HOH 40 640 100 HOH HOH B . E 4 HOH 41 641 45 HOH HOH B . E 4 HOH 42 642 75 HOH HOH B . E 4 HOH 43 643 38 HOH HOH B . E 4 HOH 44 644 98 HOH HOH B . E 4 HOH 45 645 107 HOH HOH B . E 4 HOH 46 646 30 HOH HOH B . E 4 HOH 47 647 48 HOH HOH B . E 4 HOH 48 648 49 HOH HOH B . E 4 HOH 49 649 47 HOH HOH B . E 4 HOH 50 650 91 HOH HOH B . E 4 HOH 51 651 85 HOH HOH B . E 4 HOH 52 652 42 HOH HOH B . E 4 HOH 53 653 57 HOH HOH B . E 4 HOH 54 654 39 HOH HOH B . E 4 HOH 55 655 36 HOH HOH B . E 4 HOH 56 656 96 HOH HOH B . E 4 HOH 57 657 79 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0258 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? MOLREP ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8XO3 _cell.details ? _cell.formula_units_Z ? _cell.length_a 32.899 _cell.length_a_esd ? _cell.length_b 32.899 _cell.length_b_esd ? _cell.length_c 124.596 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8XO3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8XO3 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.15 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 42.71 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '200 mM Ca Acetate, 15% (w/v) PEG 3350, 100 mM BIS-TRIS (pH 6.5)' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2019-07-18 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL45XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.000000 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL45XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8XO3 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.104 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 32332 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.1 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 8.66 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 13.02 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.094 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.996 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.104 _reflns_shell.d_res_low 1.17 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 2.00 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 4867 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 5.25 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.619 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.969 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 94.3 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] 0.754 _refine.aniso_B[1][2] 0.377 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][2] 0.754 _refine.aniso_B[2][3] -0.000 _refine.aniso_B[3][3] -2.445 _refine.B_iso_max ? _refine.B_iso_mean 23.384 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.965 _refine.correlation_coeff_Fo_to_Fc_free 0.959 _refine.details 'Hydrogens have been added in their riding positions' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8XO3 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.104 _refine.ls_d_res_low 41.532 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 32301 _refine.ls_number_reflns_R_free 1615 _refine.ls_number_reflns_R_work 30686 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.983 _refine.ls_percent_reflns_R_free 5.000 _refine.ls_R_factor_all 0.214 _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.2353 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2127 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MASK BULK SOLVENT' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.041 _refine.pdbx_overall_ESU_R_Free 0.043 _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 0.778 _refine.overall_SU_ML 0.036 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 636 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 747 _refine_hist.d_res_high 1.104 _refine_hist.d_res_low 41.532 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.014 0.013 697 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.001 0.017 654 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.773 1.629 952 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 1.633 1.572 1539 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 3.756 5.000 97 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 30.238 24.070 43 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 12.426 15.000 141 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 12.491 15.000 4 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.092 0.200 100 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 817 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 119 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? 0.230 0.200 170 ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.158 0.200 561 ? r_symmetry_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.168 0.200 346 ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? 0.079 0.200 333 ? r_symmetry_nbtor_other ? ? 'X-RAY DIFFRACTION' ? 0.176 0.200 67 ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.231 0.200 5 ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? 0.131 0.200 16 ? r_symmetry_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 0.177 0.200 61 ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? 0.208 0.200 21 ? r_symmetry_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? 1.874 2.210 355 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 1.853 2.204 353 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 2.448 3.301 447 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 2.432 3.299 447 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.828 2.623 340 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.798 2.622 340 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? 4.409 3.833 496 ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.415 3.837 497 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.800 28.950 851 ? r_lrange_it ? ? 'X-RAY DIFFRACTION' ? 5.391 27.894 816 ? r_lrange_other ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.104 1.133 2397 . 108 2053 90.1544 . 0.429 . . 0.431 . . . . . 0.397 . 20 . 0.523 0.527 0.406 'X-RAY DIFFRACTION' 1.133 1.164 2268 . 111 2091 97.0899 . 0.335 . . 0.337 . . . . . 0.300 . 20 . 0.500 0.536 0.304 'X-RAY DIFFRACTION' 1.164 1.197 2224 . 110 2106 99.6403 . 0.316 . . 0.314 . . . . . 0.285 . 20 . 0.675 0.643 0.364 'X-RAY DIFFRACTION' 1.197 1.234 2183 . 109 2067 99.6793 . 0.283 . . 0.281 . . . . . 0.255 . 20 . 0.816 0.810 0.320 'X-RAY DIFFRACTION' 1.234 1.275 2117 . 106 2008 99.8583 . 0.258 . . 0.255 . . . . . 0.232 . 20 . 0.875 0.872 0.316 'X-RAY DIFFRACTION' 1.275 1.319 2073 . 104 1969 100.0000 . 0.259 . . 0.259 . . . . . 0.232 . 20 . 0.904 0.913 0.266 'X-RAY DIFFRACTION' 1.319 1.369 1971 . 98 1873 100.0000 . 0.233 . . 0.233 . . . . . 0.210 . 20 . 0.930 0.924 0.230 'X-RAY DIFFRACTION' 1.369 1.425 1911 . 96 1815 100.0000 . 0.237 . . 0.237 . . . . . 0.214 . 20 . 0.927 0.926 0.249 'X-RAY DIFFRACTION' 1.425 1.488 1823 . 91 1731 99.9451 . 0.227 . . 0.228 . . . . . 0.212 . 20 . 0.942 0.942 0.216 'X-RAY DIFFRACTION' 1.488 1.561 1771 . 88 1676 99.6047 . 0.213 . . 0.213 . . . . . 0.202 . 20 . 0.943 0.941 0.209 'X-RAY DIFFRACTION' 1.561 1.645 1686 . 84 1602 100.0000 . 0.211 . . 0.209 . . . . . 0.212 . 20 . 0.937 0.917 0.252 'X-RAY DIFFRACTION' 1.645 1.745 1601 . 80 1521 100.0000 . 0.212 . . 0.211 . . . . . 0.218 . 20 . 0.946 0.940 0.236 'X-RAY DIFFRACTION' 1.745 1.865 1483 . 74 1409 100.0000 . 0.215 . . 0.214 . . . . . 0.234 . 20 . 0.939 0.936 0.245 'X-RAY DIFFRACTION' 1.865 2.014 1426 . 72 1354 100.0000 . 0.219 . . 0.215 . . . . . 0.244 . 20 . 0.937 0.911 0.294 'X-RAY DIFFRACTION' 2.014 2.206 1324 . 66 1258 100.0000 . 0.197 . . 0.195 . . . . . 0.239 . 20 . 0.958 0.950 0.220 'X-RAY DIFFRACTION' 2.206 2.465 1170 . 58 1112 100.0000 . 0.199 . . 0.198 . . . . . 0.248 . 20 . 0.954 0.950 0.226 'X-RAY DIFFRACTION' 2.465 2.845 1072 . 54 1018 100.0000 . 0.191 . . 0.191 . . . . . 0.256 . 20 . 0.957 0.960 0.192 'X-RAY DIFFRACTION' 2.845 3.480 923 . 46 876 99.8917 . 0.202 . . 0.202 . . . . . 0.274 . 20 . 0.959 0.960 0.216 'X-RAY DIFFRACTION' 3.480 4.904 742 . 37 705 100.0000 . 0.171 . . 0.169 . . . . . 0.245 . 20 . 0.972 0.957 0.213 'X-RAY DIFFRACTION' 4.904 41.532 467 . 24 442 99.7859 . 0.259 . . 0.259 . . . . . 0.482 . 20 . 0.944 0.924 0.255 # _struct.entry_id 8XO3 _struct.title 'Crystal structure of measles virus fusion inhibitor M1 complexed with F protein HR1 (HR1-47) (P321 space group)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8XO3 _struct_keywords.text 'Fusion protein, fusion inhibitor, six-helix bundle, ANTIVIRAL PROTEIN' _struct_keywords.pdbx_keywords 'ANTIVIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP FUS_MEASE P69353 ? 1 HQSMLNSQAIDNLRASLETTNQAIEAIRQAGQEMILAVQGVQDYINN 0 2 UNP FUS_MEASE P69353 ? 2 ISLERLDVGTNLGNAIAKLEDAKELLESSDQILRS 0 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8XO3 A 2 ? 48 ? P69353 138 ? 184 ? 138 184 2 2 8XO3 B 2 ? 36 ? P69353 452 ? 486 ? 452 486 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8XO3 ACE A 1 ? UNP P69353 ? ? acetylation 137 1 1 8XO3 NH2 A 49 ? UNP P69353 ? ? amidation 185 2 2 8XO3 ACE B 1 ? UNP P69353 ? ? acetylation 451 3 2 8XO3 NH2 B 37 ? UNP P69353 ? ? amidation 487 4 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 13680 ? 1 MORE -121 ? 1 'SSA (A^2)' 12730 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 32.8990000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 16.4495000000 -0.8660254038 -0.5000000000 0.0000000000 28.4913697591 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 HIS A 2 ? ASN A 47 ? HIS A 138 ASN A 183 1 ? 46 HELX_P HELX_P2 AA2 VAL B 9 ? SER B 36 ? VAL B 459 SER B 486 1 ? 28 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A HIS 2 N ? ? A ACE 137 A HIS 138 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale2 covale both ? A ASN 48 C ? ? ? 1_555 A NH2 49 N ? ? A ASN 184 A NH2 185 1_555 ? ? ? ? ? ? ? 1.258 ? ? covale3 covale both ? B ACE 1 C ? ? ? 1_555 B ILE 2 N ? ? B ACE 451 B ILE 452 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale4 covale both ? B SER 36 C ? ? ? 1_555 B NH2 37 N ? ? B SER 486 B NH2 487 1_555 ? ? ? ? ? ? ? 1.276 ? ? metalc1 metalc ? ? D HOH . O ? ? ? 3_565 C CA . CA ? ? A HOH 204 B CA 501 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc2 metalc ? ? B ASP 22 OD1 ? ? ? 1_555 C CA . CA ? ? B ASP 472 B CA 501 1_555 ? ? ? ? ? ? ? 2.286 ? ? metalc3 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 501 B HOH 602 1_555 ? ? ? ? ? ? ? 2.168 ? ? metalc4 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 501 B HOH 608 1_555 ? ? ? ? ? ? ? 2.302 ? ? metalc5 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 501 B HOH 614 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc6 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? B CA 501 B HOH 617 1_555 ? ? ? ? ? ? ? 2.409 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 204 ? 3_565 CA ? C CA . ? B CA 501 ? 1_555 OD1 ? B ASP 22 ? B ASP 472 ? 1_555 146.6 ? 2 O ? D HOH . ? A HOH 204 ? 3_565 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 602 ? 1_555 135.6 ? 3 OD1 ? B ASP 22 ? B ASP 472 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 602 ? 1_555 77.4 ? 4 O ? D HOH . ? A HOH 204 ? 3_565 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 608 ? 1_555 76.9 ? 5 OD1 ? B ASP 22 ? B ASP 472 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 608 ? 1_555 113.1 ? 6 O ? E HOH . ? B HOH 602 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 608 ? 1_555 77.7 ? 7 O ? D HOH . ? A HOH 204 ? 3_565 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 614 ? 1_555 110.4 ? 8 OD1 ? B ASP 22 ? B ASP 472 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 614 ? 1_555 76.7 ? 9 O ? E HOH . ? B HOH 602 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 614 ? 1_555 78.5 ? 10 O ? E HOH . ? B HOH 608 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 614 ? 1_555 151.3 ? 11 O ? D HOH . ? A HOH 204 ? 3_565 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 617 ? 1_555 80.3 ? 12 OD1 ? B ASP 22 ? B ASP 472 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 617 ? 1_555 70.4 ? 13 O ? E HOH . ? B HOH 602 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 617 ? 1_555 130.5 ? 14 O ? E HOH . ? B HOH 608 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 617 ? 1_555 81.6 ? 15 O ? E HOH . ? B HOH 614 ? 1_555 CA ? C CA . ? B CA 501 ? 1_555 O ? E HOH . ? B HOH 617 ? 1_555 126.5 ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 ACE A 1 ? HIS A 2 ? ACE A 137 ? 1_555 HIS A 138 ? 1_555 . . HIS 19 ACE None 'Terminal acetylation' 2 ACE B 1 ? ILE B 2 ? ACE B 451 ? 1_555 ILE B 452 ? 1_555 . . ILE 3 ACE None 'Terminal acetylation' 3 NH2 A 49 ? ASN A 48 ? NH2 A 185 ? 1_555 ASN A 184 ? 1_555 . . ASN 17 NH2 None 'Terminal amidation' 4 NH2 B 37 ? SER B 36 ? NH2 B 487 ? 1_555 SER B 486 ? 1_555 . . SER 6 NH2 None 'Terminal amidation' # _pdbx_entry_details.entry_id 8XO3 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 148 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OD2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 ASP _pdbx_validate_symm_contact.auth_seq_id_2 148 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_555 _pdbx_validate_symm_contact.dist 2.05 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 203 ? D HOH . 2 1 A HOH 208 ? D HOH . 3 1 A HOH 242 ? D HOH . 4 1 B HOH 644 ? E HOH . 5 1 B HOH 657 ? E HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASN N N N N 48 ASN CA C N S 49 ASN C C N N 50 ASN O O N N 51 ASN CB C N N 52 ASN CG C N N 53 ASN OD1 O N N 54 ASN ND2 N N N 55 ASN OXT O N N 56 ASN H H N N 57 ASN H2 H N N 58 ASN HA H N N 59 ASN HB2 H N N 60 ASN HB3 H N N 61 ASN HD21 H N N 62 ASN HD22 H N N 63 ASN HXT H N N 64 ASP N N N N 65 ASP CA C N S 66 ASP C C N N 67 ASP O O N N 68 ASP CB C N N 69 ASP CG C N N 70 ASP OD1 O N N 71 ASP OD2 O N N 72 ASP OXT O N N 73 ASP H H N N 74 ASP H2 H N N 75 ASP HA H N N 76 ASP HB2 H N N 77 ASP HB3 H N N 78 ASP HD2 H N N 79 ASP HXT H N N 80 CA CA CA N N 81 GLN N N N N 82 GLN CA C N S 83 GLN C C N N 84 GLN O O N N 85 GLN CB C N N 86 GLN CG C N N 87 GLN CD C N N 88 GLN OE1 O N N 89 GLN NE2 N N N 90 GLN OXT O N N 91 GLN H H N N 92 GLN H2 H N N 93 GLN HA H N N 94 GLN HB2 H N N 95 GLN HB3 H N N 96 GLN HG2 H N N 97 GLN HG3 H N N 98 GLN HE21 H N N 99 GLN HE22 H N N 100 GLN HXT H N N 101 GLU N N N N 102 GLU CA C N S 103 GLU C C N N 104 GLU O O N N 105 GLU CB C N N 106 GLU CG C N N 107 GLU CD C N N 108 GLU OE1 O N N 109 GLU OE2 O N N 110 GLU OXT O N N 111 GLU H H N N 112 GLU H2 H N N 113 GLU HA H N N 114 GLU HB2 H N N 115 GLU HB3 H N N 116 GLU HG2 H N N 117 GLU HG3 H N N 118 GLU HE2 H N N 119 GLU HXT H N N 120 GLY N N N N 121 GLY CA C N N 122 GLY C C N N 123 GLY O O N N 124 GLY OXT O N N 125 GLY H H N N 126 GLY H2 H N N 127 GLY HA2 H N N 128 GLY HA3 H N N 129 GLY HXT H N N 130 HIS N N N N 131 HIS CA C N S 132 HIS C C N N 133 HIS O O N N 134 HIS CB C N N 135 HIS CG C Y N 136 HIS ND1 N Y N 137 HIS CD2 C Y N 138 HIS CE1 C Y N 139 HIS NE2 N Y N 140 HIS OXT O N N 141 HIS H H N N 142 HIS H2 H N N 143 HIS HA H N N 144 HIS HB2 H N N 145 HIS HB3 H N N 146 HIS HD1 H N N 147 HIS HD2 H N N 148 HIS HE1 H N N 149 HIS HE2 H N N 150 HIS HXT H N N 151 HOH O O N N 152 HOH H1 H N N 153 HOH H2 H N N 154 ILE N N N N 155 ILE CA C N S 156 ILE C C N N 157 ILE O O N N 158 ILE CB C N S 159 ILE CG1 C N N 160 ILE CG2 C N N 161 ILE CD1 C N N 162 ILE OXT O N N 163 ILE H H N N 164 ILE H2 H N N 165 ILE HA H N N 166 ILE HB H N N 167 ILE HG12 H N N 168 ILE HG13 H N N 169 ILE HG21 H N N 170 ILE HG22 H N N 171 ILE HG23 H N N 172 ILE HD11 H N N 173 ILE HD12 H N N 174 ILE HD13 H N N 175 ILE HXT H N N 176 LEU N N N N 177 LEU CA C N S 178 LEU C C N N 179 LEU O O N N 180 LEU CB C N N 181 LEU CG C N N 182 LEU CD1 C N N 183 LEU CD2 C N N 184 LEU OXT O N N 185 LEU H H N N 186 LEU H2 H N N 187 LEU HA H N N 188 LEU HB2 H N N 189 LEU HB3 H N N 190 LEU HG H N N 191 LEU HD11 H N N 192 LEU HD12 H N N 193 LEU HD13 H N N 194 LEU HD21 H N N 195 LEU HD22 H N N 196 LEU HD23 H N N 197 LEU HXT H N N 198 LYS N N N N 199 LYS CA C N S 200 LYS C C N N 201 LYS O O N N 202 LYS CB C N N 203 LYS CG C N N 204 LYS CD C N N 205 LYS CE C N N 206 LYS NZ N N N 207 LYS OXT O N N 208 LYS H H N N 209 LYS H2 H N N 210 LYS HA H N N 211 LYS HB2 H N N 212 LYS HB3 H N N 213 LYS HG2 H N N 214 LYS HG3 H N N 215 LYS HD2 H N N 216 LYS HD3 H N N 217 LYS HE2 H N N 218 LYS HE3 H N N 219 LYS HZ1 H N N 220 LYS HZ2 H N N 221 LYS HZ3 H N N 222 LYS HXT H N N 223 MET N N N N 224 MET CA C N S 225 MET C C N N 226 MET O O N N 227 MET CB C N N 228 MET CG C N N 229 MET SD S N N 230 MET CE C N N 231 MET OXT O N N 232 MET H H N N 233 MET H2 H N N 234 MET HA H N N 235 MET HB2 H N N 236 MET HB3 H N N 237 MET HG2 H N N 238 MET HG3 H N N 239 MET HE1 H N N 240 MET HE2 H N N 241 MET HE3 H N N 242 MET HXT H N N 243 NH2 N N N N 244 NH2 HN1 H N N 245 NH2 HN2 H N N 246 SER N N N N 247 SER CA C N S 248 SER C C N N 249 SER O O N N 250 SER CB C N N 251 SER OG O N N 252 SER OXT O N N 253 SER H H N N 254 SER H2 H N N 255 SER HA H N N 256 SER HB2 H N N 257 SER HB3 H N N 258 SER HG H N N 259 SER HXT H N N 260 THR N N N N 261 THR CA C N S 262 THR C C N N 263 THR O O N N 264 THR CB C N R 265 THR OG1 O N N 266 THR CG2 C N N 267 THR OXT O N N 268 THR H H N N 269 THR H2 H N N 270 THR HA H N N 271 THR HB H N N 272 THR HG1 H N N 273 THR HG21 H N N 274 THR HG22 H N N 275 THR HG23 H N N 276 THR HXT H N N 277 TYR N N N N 278 TYR CA C N S 279 TYR C C N N 280 TYR O O N N 281 TYR CB C N N 282 TYR CG C Y N 283 TYR CD1 C Y N 284 TYR CD2 C Y N 285 TYR CE1 C Y N 286 TYR CE2 C Y N 287 TYR CZ C Y N 288 TYR OH O N N 289 TYR OXT O N N 290 TYR H H N N 291 TYR H2 H N N 292 TYR HA H N N 293 TYR HB2 H N N 294 TYR HB3 H N N 295 TYR HD1 H N N 296 TYR HD2 H N N 297 TYR HE1 H N N 298 TYR HE2 H N N 299 TYR HH H N N 300 TYR HXT H N N 301 VAL N N N N 302 VAL CA C N S 303 VAL C C N N 304 VAL O O N N 305 VAL CB C N N 306 VAL CG1 C N N 307 VAL CG2 C N N 308 VAL OXT O N N 309 VAL H H N N 310 VAL H2 H N N 311 VAL HA H N N 312 VAL HB H N N 313 VAL HG11 H N N 314 VAL HG12 H N N 315 VAL HG13 H N N 316 VAL HG21 H N N 317 VAL HG22 H N N 318 VAL HG23 H N N 319 VAL HXT H N N 320 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASN N CA sing N N 45 ASN N H sing N N 46 ASN N H2 sing N N 47 ASN CA C sing N N 48 ASN CA CB sing N N 49 ASN CA HA sing N N 50 ASN C O doub N N 51 ASN C OXT sing N N 52 ASN CB CG sing N N 53 ASN CB HB2 sing N N 54 ASN CB HB3 sing N N 55 ASN CG OD1 doub N N 56 ASN CG ND2 sing N N 57 ASN ND2 HD21 sing N N 58 ASN ND2 HD22 sing N N 59 ASN OXT HXT sing N N 60 ASP N CA sing N N 61 ASP N H sing N N 62 ASP N H2 sing N N 63 ASP CA C sing N N 64 ASP CA CB sing N N 65 ASP CA HA sing N N 66 ASP C O doub N N 67 ASP C OXT sing N N 68 ASP CB CG sing N N 69 ASP CB HB2 sing N N 70 ASP CB HB3 sing N N 71 ASP CG OD1 doub N N 72 ASP CG OD2 sing N N 73 ASP OD2 HD2 sing N N 74 ASP OXT HXT sing N N 75 GLN N CA sing N N 76 GLN N H sing N N 77 GLN N H2 sing N N 78 GLN CA C sing N N 79 GLN CA CB sing N N 80 GLN CA HA sing N N 81 GLN C O doub N N 82 GLN C OXT sing N N 83 GLN CB CG sing N N 84 GLN CB HB2 sing N N 85 GLN CB HB3 sing N N 86 GLN CG CD sing N N 87 GLN CG HG2 sing N N 88 GLN CG HG3 sing N N 89 GLN CD OE1 doub N N 90 GLN CD NE2 sing N N 91 GLN NE2 HE21 sing N N 92 GLN NE2 HE22 sing N N 93 GLN OXT HXT sing N N 94 GLU N CA sing N N 95 GLU N H sing N N 96 GLU N H2 sing N N 97 GLU CA C sing N N 98 GLU CA CB sing N N 99 GLU CA HA sing N N 100 GLU C O doub N N 101 GLU C OXT sing N N 102 GLU CB CG sing N N 103 GLU CB HB2 sing N N 104 GLU CB HB3 sing N N 105 GLU CG CD sing N N 106 GLU CG HG2 sing N N 107 GLU CG HG3 sing N N 108 GLU CD OE1 doub N N 109 GLU CD OE2 sing N N 110 GLU OE2 HE2 sing N N 111 GLU OXT HXT sing N N 112 GLY N CA sing N N 113 GLY N H sing N N 114 GLY N H2 sing N N 115 GLY CA C sing N N 116 GLY CA HA2 sing N N 117 GLY CA HA3 sing N N 118 GLY C O doub N N 119 GLY C OXT sing N N 120 GLY OXT HXT sing N N 121 HIS N CA sing N N 122 HIS N H sing N N 123 HIS N H2 sing N N 124 HIS CA C sing N N 125 HIS CA CB sing N N 126 HIS CA HA sing N N 127 HIS C O doub N N 128 HIS C OXT sing N N 129 HIS CB CG sing N N 130 HIS CB HB2 sing N N 131 HIS CB HB3 sing N N 132 HIS CG ND1 sing Y N 133 HIS CG CD2 doub Y N 134 HIS ND1 CE1 doub Y N 135 HIS ND1 HD1 sing N N 136 HIS CD2 NE2 sing Y N 137 HIS CD2 HD2 sing N N 138 HIS CE1 NE2 sing Y N 139 HIS CE1 HE1 sing N N 140 HIS NE2 HE2 sing N N 141 HIS OXT HXT sing N N 142 HOH O H1 sing N N 143 HOH O H2 sing N N 144 ILE N CA sing N N 145 ILE N H sing N N 146 ILE N H2 sing N N 147 ILE CA C sing N N 148 ILE CA CB sing N N 149 ILE CA HA sing N N 150 ILE C O doub N N 151 ILE C OXT sing N N 152 ILE CB CG1 sing N N 153 ILE CB CG2 sing N N 154 ILE CB HB sing N N 155 ILE CG1 CD1 sing N N 156 ILE CG1 HG12 sing N N 157 ILE CG1 HG13 sing N N 158 ILE CG2 HG21 sing N N 159 ILE CG2 HG22 sing N N 160 ILE CG2 HG23 sing N N 161 ILE CD1 HD11 sing N N 162 ILE CD1 HD12 sing N N 163 ILE CD1 HD13 sing N N 164 ILE OXT HXT sing N N 165 LEU N CA sing N N 166 LEU N H sing N N 167 LEU N H2 sing N N 168 LEU CA C sing N N 169 LEU CA CB sing N N 170 LEU CA HA sing N N 171 LEU C O doub N N 172 LEU C OXT sing N N 173 LEU CB CG sing N N 174 LEU CB HB2 sing N N 175 LEU CB HB3 sing N N 176 LEU CG CD1 sing N N 177 LEU CG CD2 sing N N 178 LEU CG HG sing N N 179 LEU CD1 HD11 sing N N 180 LEU CD1 HD12 sing N N 181 LEU CD1 HD13 sing N N 182 LEU CD2 HD21 sing N N 183 LEU CD2 HD22 sing N N 184 LEU CD2 HD23 sing N N 185 LEU OXT HXT sing N N 186 LYS N CA sing N N 187 LYS N H sing N N 188 LYS N H2 sing N N 189 LYS CA C sing N N 190 LYS CA CB sing N N 191 LYS CA HA sing N N 192 LYS C O doub N N 193 LYS C OXT sing N N 194 LYS CB CG sing N N 195 LYS CB HB2 sing N N 196 LYS CB HB3 sing N N 197 LYS CG CD sing N N 198 LYS CG HG2 sing N N 199 LYS CG HG3 sing N N 200 LYS CD CE sing N N 201 LYS CD HD2 sing N N 202 LYS CD HD3 sing N N 203 LYS CE NZ sing N N 204 LYS CE HE2 sing N N 205 LYS CE HE3 sing N N 206 LYS NZ HZ1 sing N N 207 LYS NZ HZ2 sing N N 208 LYS NZ HZ3 sing N N 209 LYS OXT HXT sing N N 210 MET N CA sing N N 211 MET N H sing N N 212 MET N H2 sing N N 213 MET CA C sing N N 214 MET CA CB sing N N 215 MET CA HA sing N N 216 MET C O doub N N 217 MET C OXT sing N N 218 MET CB CG sing N N 219 MET CB HB2 sing N N 220 MET CB HB3 sing N N 221 MET CG SD sing N N 222 MET CG HG2 sing N N 223 MET CG HG3 sing N N 224 MET SD CE sing N N 225 MET CE HE1 sing N N 226 MET CE HE2 sing N N 227 MET CE HE3 sing N N 228 MET OXT HXT sing N N 229 NH2 N HN1 sing N N 230 NH2 N HN2 sing N N 231 SER N CA sing N N 232 SER N H sing N N 233 SER N H2 sing N N 234 SER CA C sing N N 235 SER CA CB sing N N 236 SER CA HA sing N N 237 SER C O doub N N 238 SER C OXT sing N N 239 SER CB OG sing N N 240 SER CB HB2 sing N N 241 SER CB HB3 sing N N 242 SER OG HG sing N N 243 SER OXT HXT sing N N 244 THR N CA sing N N 245 THR N H sing N N 246 THR N H2 sing N N 247 THR CA C sing N N 248 THR CA CB sing N N 249 THR CA HA sing N N 250 THR C O doub N N 251 THR C OXT sing N N 252 THR CB OG1 sing N N 253 THR CB CG2 sing N N 254 THR CB HB sing N N 255 THR OG1 HG1 sing N N 256 THR CG2 HG21 sing N N 257 THR CG2 HG22 sing N N 258 THR CG2 HG23 sing N N 259 THR OXT HXT sing N N 260 TYR N CA sing N N 261 TYR N H sing N N 262 TYR N H2 sing N N 263 TYR CA C sing N N 264 TYR CA CB sing N N 265 TYR CA HA sing N N 266 TYR C O doub N N 267 TYR C OXT sing N N 268 TYR CB CG sing N N 269 TYR CB HB2 sing N N 270 TYR CB HB3 sing N N 271 TYR CG CD1 doub Y N 272 TYR CG CD2 sing Y N 273 TYR CD1 CE1 sing Y N 274 TYR CD1 HD1 sing N N 275 TYR CD2 CE2 doub Y N 276 TYR CD2 HD2 sing N N 277 TYR CE1 CZ doub Y N 278 TYR CE1 HE1 sing N N 279 TYR CE2 CZ sing Y N 280 TYR CE2 HE2 sing N N 281 TYR CZ OH sing N N 282 TYR OH HH sing N N 283 TYR OXT HXT sing N N 284 VAL N CA sing N N 285 VAL N H sing N N 286 VAL N H2 sing N N 287 VAL CA C sing N N 288 VAL CA CB sing N N 289 VAL CA HA sing N N 290 VAL C O doub N N 291 VAL C OXT sing N N 292 VAL CB CG1 sing N N 293 VAL CB CG2 sing N N 294 VAL CB HB sing N N 295 VAL CG1 HG11 sing N N 296 VAL CG1 HG12 sing N N 297 VAL CG1 HG13 sing N N 298 VAL CG2 HG21 sing N N 299 VAL CG2 HG22 sing N N 300 VAL CG2 HG23 sing N N 301 VAL OXT HXT sing N N 302 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan JP16H05346 1 'Japan Society for the Promotion of Science (JSPS)' Japan JP18H02555 2 'Japan Society for the Promotion of Science (JSPS)' Japan JP19H03701 3 'Japan Society for the Promotion of Science (JSPS)' Japan JP21K19366 4 'Japan Agency for Medical Research and Development (AMED)' Japan JP20ak0101140 5 'Other private' Japan ? 6 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1SVF _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8XO3 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.030396 _atom_sites.fract_transf_matrix[1][2] 0.017549 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.035098 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008026 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.310 20.844 1.020 10.208 1.589 0.569 0.865 51.651 0.216 CA 20 20 8.627 10.442 7.387 0.660 1.590 85.748 1.021 178.437 1.375 H 1 1 0.493 10.511 0.323 26.126 0.140 3.142 0.041 57.800 0.003 N 7 7 12.222 0.006 3.135 9.893 2.014 28.997 1.167 0.583 -11.538 O 8 8 3.049 13.277 2.287 5.701 1.546 0.324 0.867 32.909 0.251 S 16 16 6.905 1.468 5.203 22.215 1.438 0.254 1.586 56.172 0.867 # loop_ #