data_8XPA # _entry.id 8XPA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8XPA pdb_00008xpa 10.2210/pdb8xpa/pdb WWPDB D_1300043800 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-05-29 2 'Structure model' 1 1 2024-08-14 3 'Structure model' 1 2 2024-08-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8XPA _pdbx_database_status.recvd_initial_deposition_date 2024-01-03 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email mhho@dragon.nchu.edu.tw _pdbx_contact_author.name_first Ming-Hon _pdbx_contact_author.name_last Hou _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4170-1527 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hou, M.H.' 1 0000-0003-4170-1527 'Lin, S.M.' 2 0000-0001-7813-9000 'Neidle, S.' 3 0000-0003-0622-6548 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 8566 _citation.page_last 8579 _citation.title 'Structural basis of water-mediated cis Watson-Crick/Hoogsteen base-pair formation in non-CpG methylation.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae594 _citation.pdbx_database_id_PubMed 38989613 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lin, S.M.' 1 ? primary 'Huang, H.T.' 2 ? primary 'Fang, P.J.' 3 ? primary 'Chang, C.F.' 4 ? primary 'Satange, R.' 5 ? primary 'Chang, C.K.' 6 ? primary 'Chou, S.H.' 7 ? primary 'Neidle, S.' 8 ? primary 'Hou, M.H.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*CP*GP*GP*CP*GP*T)-3') ; 2138.423 4 ? ? ? ? 2 polymer syn ;DNA (5'-D(P*AP*CP*GP*(5CM)P*CP*GP*T)-3') ; 2112.426 4 ? ? ? ? 3 non-polymer syn 'MANGANESE (II) ION' 54.938 3 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 102 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DA)(DC)(DG)(DG)(DC)(DG)(DT)' ACGGCGT A,D,F,H ? 2 polydeoxyribonucleotide no yes '(DA)(DC)(DG)(5CM)(DC)(DG)(DT)' ACGCCGT B,C,E,G ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MANGANESE (II) ION' MN 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DC n 1 3 DG n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DT n 2 1 DA n 2 2 DC n 2 3 DG n 2 4 5CM n 2 5 DC n 2 6 DG n 2 7 DT n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 7 'synthetic construct' ? 32630 ? 2 1 sample 1 7 'synthetic construct' ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DT 7 7 7 DT DT A . n B 2 1 DA 1 1 1 DA DA B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DG 3 3 3 DG DG B . n B 2 4 5CM 4 4 4 5CM 5MC B . n B 2 5 DC 5 5 5 DC DC B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 DT 7 7 7 DT DT B . n C 2 1 DA 1 1 1 DA DA C . n C 2 2 DC 2 2 2 DC DC C . n C 2 3 DG 3 3 3 DG DG C . n C 2 4 5CM 4 4 4 5CM 5MC C . n C 2 5 DC 5 5 5 DC DC C . n C 2 6 DG 6 6 6 DG DG C . n C 2 7 DT 7 7 7 DT DT C . n D 1 1 DA 1 1 1 DA DA D . n D 1 2 DC 2 2 2 DC DC D . n D 1 3 DG 3 3 3 DG DG D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DC 5 5 5 DC DC D . n D 1 6 DG 6 6 6 DG DG D . n D 1 7 DT 7 7 7 DT DT D . n E 1 1 DA 1 1 1 DA DA F . n E 1 2 DC 2 2 2 DC DC F . n E 1 3 DG 3 3 3 DG DG F . n E 1 4 DG 4 4 4 DG DG F . n E 1 5 DC 5 5 5 DC DC F . n E 1 6 DG 6 6 6 DG DG F . n E 1 7 DT 7 7 7 DT DT F . n F 2 1 DA 1 1 1 DA DA E . n F 2 2 DC 2 2 2 DC DC E . n F 2 3 DG 3 3 3 DG DG E . n F 2 4 5CM 4 4 4 5CM 5MC E . n F 2 5 DC 5 5 5 DC DC E . n F 2 6 DG 6 6 6 DG DG E . n F 2 7 DT 7 7 7 DT DT E . n G 2 1 DA 1 1 1 DA DA G . n G 2 2 DC 2 2 2 DC DC G . n G 2 3 DG 3 3 3 DG DG G . n G 2 4 5CM 4 4 4 5CM 5MC G . n G 2 5 DC 5 5 5 DC DC G . n G 2 6 DG 6 6 6 DG DG G . n G 2 7 DT 7 7 7 DT DT G . n H 1 1 DA 1 1 1 DA DA H . n H 1 2 DC 2 2 2 DC DC H . n H 1 3 DG 3 3 3 DG DG H . n H 1 4 DG 4 4 4 DG DG H . n H 1 5 DC 5 5 5 DC DC H . n H 1 6 DG 6 6 6 DG DG H . n H 1 7 DT 7 7 7 DT DT H . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 MN 1 101 2 MN MN A . J 3 MN 1 102 3 MN MN A . K 3 MN 1 101 1 MN MN D . L 4 MG 1 102 1 MG MG D . M 5 HOH 1 201 22 HOH HOH A . M 5 HOH 2 202 15 HOH HOH A . M 5 HOH 3 203 11 HOH HOH A . M 5 HOH 4 204 66 HOH HOH A . M 5 HOH 5 205 76 HOH HOH A . M 5 HOH 6 206 57 HOH HOH A . M 5 HOH 7 207 58 HOH HOH A . M 5 HOH 8 208 9 HOH HOH A . M 5 HOH 9 209 131 HOH HOH A . M 5 HOH 10 210 31 HOH HOH A . M 5 HOH 11 211 49 HOH HOH A . M 5 HOH 12 212 14 HOH HOH A . M 5 HOH 13 213 130 HOH HOH A . M 5 HOH 14 214 17 HOH HOH A . M 5 HOH 15 215 128 HOH HOH A . M 5 HOH 16 216 129 HOH HOH A . M 5 HOH 17 217 60 HOH HOH A . M 5 HOH 18 218 39 HOH HOH A . M 5 HOH 19 219 138 HOH HOH A . M 5 HOH 20 220 100 HOH HOH A . M 5 HOH 21 221 86 HOH HOH A . M 5 HOH 22 222 79 HOH HOH A . M 5 HOH 23 223 87 HOH HOH A . M 5 HOH 24 224 134 HOH HOH A . N 5 HOH 1 101 93 HOH HOH B . N 5 HOH 2 102 23 HOH HOH B . N 5 HOH 3 103 27 HOH HOH B . N 5 HOH 4 104 75 HOH HOH B . N 5 HOH 5 105 26 HOH HOH B . N 5 HOH 6 106 52 HOH HOH B . N 5 HOH 7 107 21 HOH HOH B . N 5 HOH 8 108 67 HOH HOH B . N 5 HOH 9 109 3 HOH HOH B . N 5 HOH 10 110 51 HOH HOH B . N 5 HOH 11 111 143 HOH HOH B . N 5 HOH 12 112 99 HOH HOH B . O 5 HOH 1 101 42 HOH HOH C . O 5 HOH 2 102 32 HOH HOH C . O 5 HOH 3 103 19 HOH HOH C . O 5 HOH 4 104 12 HOH HOH C . O 5 HOH 5 105 117 HOH HOH C . O 5 HOH 6 106 7 HOH HOH C . O 5 HOH 7 107 63 HOH HOH C . O 5 HOH 8 108 4 HOH HOH C . O 5 HOH 9 109 114 HOH HOH C . O 5 HOH 10 110 71 HOH HOH C . O 5 HOH 11 111 91 HOH HOH C . O 5 HOH 12 112 121 HOH HOH C . P 5 HOH 1 201 24 HOH HOH D . P 5 HOH 2 202 36 HOH HOH D . P 5 HOH 3 203 108 HOH HOH D . P 5 HOH 4 204 78 HOH HOH D . P 5 HOH 5 205 96 HOH HOH D . P 5 HOH 6 206 118 HOH HOH D . P 5 HOH 7 207 89 HOH HOH D . P 5 HOH 8 208 53 HOH HOH D . P 5 HOH 9 209 50 HOH HOH D . P 5 HOH 10 210 62 HOH HOH D . P 5 HOH 11 211 29 HOH HOH D . P 5 HOH 12 212 115 HOH HOH D . P 5 HOH 13 213 107 HOH HOH D . P 5 HOH 14 214 120 HOH HOH D . P 5 HOH 15 215 5 HOH HOH D . P 5 HOH 16 216 98 HOH HOH D . P 5 HOH 17 217 55 HOH HOH D . P 5 HOH 18 218 104 HOH HOH D . P 5 HOH 19 219 101 HOH HOH D . P 5 HOH 20 220 68 HOH HOH D . P 5 HOH 21 221 48 HOH HOH D . P 5 HOH 22 222 74 HOH HOH D . Q 5 HOH 1 101 40 HOH HOH F . Q 5 HOH 2 102 95 HOH HOH F . Q 5 HOH 3 103 25 HOH HOH F . Q 5 HOH 4 104 116 HOH HOH F . Q 5 HOH 5 105 84 HOH HOH F . R 5 HOH 1 101 1 HOH HOH E . R 5 HOH 2 102 18 HOH HOH E . R 5 HOH 3 103 13 HOH HOH E . R 5 HOH 4 104 106 HOH HOH E . R 5 HOH 5 105 142 HOH HOH E . R 5 HOH 6 106 56 HOH HOH E . R 5 HOH 7 107 139 HOH HOH E . R 5 HOH 8 108 28 HOH HOH E . R 5 HOH 9 109 69 HOH HOH E . R 5 HOH 10 110 6 HOH HOH E . R 5 HOH 11 111 81 HOH HOH E . R 5 HOH 12 112 73 HOH HOH E . R 5 HOH 13 113 33 HOH HOH E . R 5 HOH 14 114 85 HOH HOH E . S 5 HOH 1 101 127 HOH HOH G . S 5 HOH 2 102 141 HOH HOH G . S 5 HOH 3 103 133 HOH HOH G . S 5 HOH 4 104 137 HOH HOH G . S 5 HOH 5 105 132 HOH HOH G . S 5 HOH 6 106 126 HOH HOH G . S 5 HOH 7 107 88 HOH HOH G . S 5 HOH 8 108 125 HOH HOH G . S 5 HOH 9 109 83 HOH HOH G . S 5 HOH 10 110 20 HOH HOH G . S 5 HOH 11 111 38 HOH HOH G . T 5 HOH 1 101 144 HOH HOH H . T 5 HOH 2 102 140 HOH HOH H . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.20.1_4487: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 110.92 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8XPA _cell.details ? _cell.formula_units_Z ? _cell.length_a 39.432 _cell.length_a_esd ? _cell.length_b 46.243 _cell.length_b_esd ? _cell.length_c 47.061 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8XPA _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8XPA _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.82 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '50mM MES (pH 6.5), 1mM Spermine HCl, 20% PEG 400' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293.15 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2020-02-19 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.99984 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSRRC BEAMLINE TPS 05A' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.99984 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 'TPS 05A' _diffrn_source.pdbx_synchrotron_site NSRRC # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 8XPA _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.00 _reflns.d_resolution_low 30.00 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 10734 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 3.6 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.7 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.046 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_CC_star _reflns_shell.pdbx_R_split _reflns_shell.percent_possible_all _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_percent_possible_ellipsoidal _reflns_shell.pdbx_percent_possible_spherical _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous _reflns_shell.pdbx_percent_possible_spherical_anomalous _reflns_shell.pdbx_redundancy_anomalous _reflns_shell.pdbx_CC_half_anomalous _reflns_shell.pdbx_absDiff_over_sigma_anomalous _reflns_shell.pdbx_percent_possible_anomalous 2.00 2.07 ? ? ? ? ? ? 1077 ? ? ? ? ? ? ? ? ? ? ? 3.6 0.920 ? ? 0.236 0.123 ? 1 1 0.969 0.992 ? 99.7 ? 0.200 ? ? ? ? ? ? ? ? ? 2.07 2.15 ? ? ? ? ? ? 1065 ? ? ? ? ? ? ? ? ? ? ? 3.7 1.014 ? ? 0.177 0.092 ? 2 1 0.984 0.996 ? 99.9 ? 0.151 ? ? ? ? ? ? ? ? ? 2.15 2.25 ? ? ? ? ? ? 1092 ? ? ? ? ? ? ? ? ? ? ? 3.6 0.966 ? ? 0.150 0.078 ? 3 1 0.990 0.998 ? 99.9 ? 0.128 ? ? ? ? ? ? ? ? ? 2.25 2.37 ? ? ? ? ? ? 1050 ? ? ? ? ? ? ? ? ? ? ? 3.6 1.068 ? ? 0.120 0.062 ? 4 1 0.991 0.998 ? 99.7 ? 0.102 ? ? ? ? ? ? ? ? ? 2.37 2.52 ? ? ? ? ? ? 1072 ? ? ? ? ? ? ? ? ? ? ? 3.7 1.020 ? ? 0.098 0.051 ? 5 1 0.993 0.998 ? 99.7 ? 0.084 ? ? ? ? ? ? ? ? ? 2.52 2.71 ? ? ? ? ? ? 1081 ? ? ? ? ? ? ? ? ? ? ? 3.6 1.073 ? ? 0.087 0.045 ? 6 1 0.993 0.998 ? 99.8 ? 0.074 ? ? ? ? ? ? ? ? ? 2.71 2.99 ? ? ? ? ? ? 1080 ? ? ? ? ? ? ? ? ? ? ? 3.6 1.036 ? ? 0.081 0.042 ? 7 1 0.994 0.998 ? 99.5 ? 0.068 ? ? ? ? ? ? ? ? ? 2.99 3.42 ? ? ? ? ? ? 1053 ? ? ? ? ? ? ? ? ? ? ? 3.5 1.095 ? ? 0.052 0.028 ? 8 1 0.998 1.000 ? 97.3 ? 0.044 ? ? ? ? ? ? ? ? ? 3.42 4.31 ? ? ? ? ? ? 1079 ? ? ? ? ? ? ? ? ? ? ? 3.4 0.949 ? ? 0.047 0.025 ? 9 1 0.998 0.999 ? 98.4 ? 0.039 ? ? ? ? ? ? ? ? ? 4.31 10 ? ? ? ? ? ? 1085 ? ? ? ? ? ? ? ? ? ? ? 3.5 1.109 ? ? 0.042 0.022 ? 10 1 0.998 0.999 ? 96.4 ? 0.035 ? ? ? ? ? ? ? ? ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8XPA _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.00 _refine.ls_d_res_low 24.28 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 10663 _refine.ls_number_reflns_R_free 1056 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.33 _refine.ls_percent_reflns_R_free 9.90 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2241 _refine.ls_R_factor_R_free 0.2521 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2209 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method NONE _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.31 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.27 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 24.28 _refine_hist.number_atoms_solvent 102 _refine_hist.number_atoms_total 1234 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1128 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.025 ? ? ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.042 ? ? ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 33.936 ? 544 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.186 ? 226 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.013 ? 60 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 2.00 2.09 . . 130 1185 98.00 . . . . 0.2883 . . . . . . . . . . . 0.3155 'X-RAY DIFFRACTION' 2.09 2.20 . . 131 1211 100.00 . . . . 0.2686 . . . . . . . . . . . 0.3448 'X-RAY DIFFRACTION' 2.20 2.34 . . 136 1208 99.00 . . . . 0.2829 . . . . . . . . . . . 0.3684 'X-RAY DIFFRACTION' 2.34 2.52 . . 134 1183 100.00 . . . . 0.2951 . . . . . . . . . . . 0.3637 'X-RAY DIFFRACTION' 2.52 2.77 . . 136 1229 99.00 . . . . 0.2898 . . . . . . . . . . . 0.3348 'X-RAY DIFFRACTION' 2.77 3.17 . . 132 1196 99.00 . . . . 0.2726 . . . . . . . . . . . 0.2734 'X-RAY DIFFRACTION' 3.17 3.99 . . 118 1181 95.00 . . . . 0.1975 . . . . . . . . . . . 0.2370 'X-RAY DIFFRACTION' 3.99 10 . . 139 1214 97.00 . . . . 0.1566 . . . . . . . . . . . 0.1679 # _struct.entry_id 8XPA _struct.title 'Crystal structure of d(ACGmCCGT/ACGGCGT)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8XPA _struct_keywords.text 'naked DNA duplex, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 1 ? E N N 1 ? F N N 2 ? G N N 2 ? H N N 1 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 4 ? M N N 5 ? N N N 5 ? O N N 5 ? P N N 5 ? Q N N 5 ? R N N 5 ? S N N 5 ? T N N 5 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 8XPA 8XPA ? 1 ? 1 2 PDB 8XPA 8XPA ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8XPA A 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 2 2 8XPA B 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 3 2 8XPA C 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 4 1 8XPA D 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 5 1 8XPA F 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 6 2 8XPA E 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 7 2 8XPA G 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 8 1 8XPA H 1 ? 7 ? 8XPA 1 ? 7 ? 1 7 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 3 author_and_software_defined_assembly PISA dimeric 2 4 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1390 ? 1 MORE -0 ? 1 'SSA (A^2)' 2710 ? 2 'ABSA (A^2)' 1370 ? 2 MORE -2 ? 2 'SSA (A^2)' 2720 ? 3 'ABSA (A^2)' 1430 ? 3 MORE -0 ? 3 'SSA (A^2)' 2650 ? 4 'ABSA (A^2)' 1440 ? 4 MORE 1 ? 4 'SSA (A^2)' 2650 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,I,J,M,N 2 1 C,D,K,L,O,P 3 1 E,F,Q,R 4 1 G,H,S,T # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 3 "O3'" ? ? ? 1_555 B 5CM 4 P ? ? B DG 3 B 5CM 4 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale2 covale both ? B 5CM 4 "O3'" ? ? ? 1_555 B DC 5 P ? ? B 5CM 4 B DC 5 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale3 covale both ? C DG 3 "O3'" ? ? ? 1_555 C 5CM 4 P ? ? C DG 3 C 5CM 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale4 covale both ? C 5CM 4 "O3'" ? ? ? 1_555 C DC 5 P ? ? C 5CM 4 C DC 5 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale5 covale both ? F DG 3 "O3'" ? ? ? 1_555 F 5CM 4 P A ? E DG 3 E 5CM 4 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale6 covale both ? F DG 3 "O3'" ? ? ? 1_555 F 5CM 4 P B ? E DG 3 E 5CM 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale7 covale both ? F 5CM 4 "O3'" A ? ? 1_555 F DC 5 P ? ? E 5CM 4 E DC 5 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale8 covale both ? F 5CM 4 "O3'" B ? ? 1_555 F DC 5 P ? ? E 5CM 4 E DC 5 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale9 covale both ? G DG 3 "O3'" ? ? ? 1_555 G 5CM 4 P A ? G DG 3 G 5CM 4 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale10 covale both ? G DG 3 "O3'" ? ? ? 1_555 G 5CM 4 P B ? G DG 3 G 5CM 4 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale11 covale both ? G 5CM 4 "O3'" A ? ? 1_555 G DC 5 P ? ? G 5CM 4 G DC 5 1_555 ? ? ? ? ? ? ? 1.455 ? ? covale12 covale both ? G 5CM 4 "O3'" B ? ? 1_555 G DC 5 P ? ? G 5CM 4 G DC 5 1_555 ? ? ? ? ? ? ? 1.451 ? ? metalc1 metalc ? ? A DG 3 N7 ? ? ? 1_555 I MN . MN ? ? A DG 3 A MN 101 1_555 ? ? ? ? ? ? ? 2.408 ? ? metalc2 metalc ? ? A DG 3 OP2 ? ? ? 1_555 J MN . MN ? ? A DG 3 A MN 102 1_555 ? ? ? ? ? ? ? 1.991 ? ? metalc3 metalc ? ? I MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 101 A HOH 206 1_555 ? ? ? ? ? ? ? 2.226 ? ? metalc4 metalc ? ? I MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 101 A HOH 207 1_555 ? ? ? ? ? ? ? 2.142 ? ? metalc5 metalc ? ? I MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 101 A HOH 215 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc6 metalc ? ? I MN . MN ? ? ? 1_555 G DC 5 OP2 ? ? A MN 101 G DC 5 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc7 metalc ? ? I MN . MN ? ? ? 1_555 S HOH . O ? ? A MN 101 G HOH 107 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc8 metalc ? ? J MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 102 A HOH 209 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc9 metalc ? ? J MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 102 A HOH 213 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc10 metalc ? ? J MN . MN ? ? ? 1_555 M HOH . O ? ? A MN 102 A HOH 216 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc11 metalc ? ? J MN . MN ? ? ? 1_555 S HOH . O ? ? A MN 102 G HOH 103 1_555 ? ? ? ? ? ? ? 2.165 ? ? metalc12 metalc ? ? J MN . MN ? ? ? 1_555 S HOH . O ? ? A MN 102 G HOH 105 1_555 ? ? ? ? ? ? ? 2.265 ? ? metalc13 metalc ? ? D DG 3 N7 ? ? ? 1_555 K MN . MN ? ? D DG 3 D MN 101 1_555 ? ? ? ? ? ? ? 2.473 ? ? metalc14 metalc ? ? D DG 3 OP2 ? ? ? 1_555 L MG . MG ? ? D DG 3 D MG 102 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc15 metalc ? ? K MN . MN ? ? ? 1_555 P HOH . O ? ? D MN 101 D HOH 203 1_555 ? ? ? ? ? ? ? 2.315 ? ? metalc16 metalc ? ? K MN . MN ? ? ? 1_555 F DC 5 OP2 ? ? D MN 101 E DC 5 1_555 ? ? ? ? ? ? ? 2.180 ? ? metalc17 metalc ? ? K MN . MN ? ? ? 1_555 R HOH . O ? ? D MN 101 E HOH 106 1_555 ? ? ? ? ? ? ? 2.267 ? ? metalc18 metalc ? ? K MN . MN ? ? ? 1_555 R HOH . O ? ? D MN 101 E HOH 110 1_555 ? ? ? ? ? ? ? 2.034 ? ? metalc19 metalc ? ? K MN . MN ? ? ? 1_555 R HOH . O ? ? D MN 101 E HOH 112 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc20 metalc ? ? L MG . MG ? ? ? 1_555 P HOH . O ? ? D MG 102 D HOH 211 1_555 ? ? ? ? ? ? ? 2.057 ? ? metalc21 metalc ? ? L MG . MG ? ? ? 1_555 P HOH . O ? ? D MG 102 D HOH 213 1_555 ? ? ? ? ? ? ? 2.349 ? ? metalc22 metalc ? ? L MG . MG ? ? ? 1_555 P HOH . O ? ? D MG 102 D HOH 218 1_555 ? ? ? ? ? ? ? 2.225 ? ? metalc23 metalc ? ? L MG . MG ? ? ? 1_555 R HOH . O ? ? D MG 102 E HOH 104 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc24 metalc ? ? L MG . MG ? ? ? 1_555 R HOH . O ? ? D MG 102 E HOH 108 1_555 ? ? ? ? ? ? ? 2.155 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 1 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 2 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B 5CM 4 N3 ? ? A DG 4 B 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B 5CM 4 O2 ? ? A DG 4 B 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B 5CM 4 N4 ? ? A DG 4 B 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 5 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 6 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 7 B DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? C DA 1 N1 ? ? ? 1_555 D DT 7 N3 ? ? C DA 1 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? C DA 1 N6 ? ? ? 1_555 D DT 7 O4 ? ? C DA 1 D DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 2 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DC 5 N3 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DC 5 O2 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? C DG 3 O6 ? ? ? 1_555 D DC 5 N4 ? ? C DG 3 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? C 5CM 4 N3 ? ? ? 1_555 D DG 4 N1 ? ? C 5CM 4 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? C 5CM 4 N4 ? ? ? 1_555 D DG 4 O6 ? ? C 5CM 4 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? C 5CM 4 O2 ? ? ? 1_555 D DG 4 N2 ? ? C 5CM 4 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? C DC 5 N3 ? ? ? 1_555 D DG 3 N1 ? ? C DC 5 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? C DC 5 N4 ? ? ? 1_555 D DG 3 O6 ? ? C DC 5 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? C DC 5 O2 ? ? ? 1_555 D DG 3 N2 ? ? C DC 5 D DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 6 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 6 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 6 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C DT 7 N3 ? ? ? 1_555 D DA 1 N1 ? ? C DT 7 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DT 7 O4 ? ? ? 1_555 D DA 1 N6 ? ? C DT 7 D DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? E DA 1 N1 ? ? ? 1_555 F DT 7 N3 ? ? F DA 1 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? E DA 1 N6 ? ? ? 1_555 F DT 7 O4 ? ? F DA 1 E DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? E DC 2 N3 ? ? ? 1_555 F DG 6 N1 ? ? F DC 2 E DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? E DC 2 N4 ? ? ? 1_555 F DG 6 O6 ? ? F DC 2 E DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? E DC 2 O2 ? ? ? 1_555 F DG 6 N2 ? ? F DC 2 E DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? E DG 3 N1 ? ? ? 1_555 F DC 5 N3 ? ? F DG 3 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? E DG 3 N2 ? ? ? 1_555 F DC 5 O2 ? ? F DG 3 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? E DG 3 O6 ? ? ? 1_555 F DC 5 N4 ? ? F DG 3 E DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? E DG 4 N1 A ? ? 1_555 F 5CM 4 N3 A ? F DG 4 E 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? E DG 4 N1 B ? ? 1_555 F 5CM 4 N3 B ? F DG 4 E 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? E DG 4 N2 A ? ? 1_555 F 5CM 4 O2 A ? F DG 4 E 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? E DG 4 N2 B ? ? 1_555 F 5CM 4 O2 B ? F DG 4 E 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? E DG 4 O6 A ? ? 1_555 F 5CM 4 N4 A ? F DG 4 E 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? E DG 4 O6 B ? ? 1_555 F 5CM 4 N4 B ? F DG 4 E 5CM 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? E DC 5 N3 ? ? ? 1_555 F DG 3 N1 ? ? F DC 5 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? E DC 5 N4 ? ? ? 1_555 F DG 3 O6 ? ? F DC 5 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? E DC 5 O2 ? ? ? 1_555 F DG 3 N2 ? ? F DC 5 E DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? E DG 6 N1 ? ? ? 1_555 F DC 2 N3 ? ? F DG 6 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? E DG 6 N2 ? ? ? 1_555 F DC 2 O2 ? ? F DG 6 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? E DG 6 O6 ? ? ? 1_555 F DC 2 N4 ? ? F DG 6 E DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? E DT 7 N3 ? ? ? 1_555 F DA 1 N1 ? ? F DT 7 E DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? E DT 7 O4 ? ? ? 1_555 F DA 1 N6 ? ? F DT 7 E DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? G DA 1 N1 ? ? ? 1_555 H DT 7 N3 ? ? G DA 1 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? G DA 1 N6 ? ? ? 1_555 H DT 7 O4 ? ? G DA 1 H DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? G DC 2 N3 ? ? ? 1_555 H DG 6 N1 ? ? G DC 2 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? G DC 2 N4 ? ? ? 1_555 H DG 6 O6 ? ? G DC 2 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? G DC 2 O2 ? ? ? 1_555 H DG 6 N2 ? ? G DC 2 H DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? G DG 3 N1 ? ? ? 1_555 H DC 5 N3 ? ? G DG 3 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? G DG 3 N2 ? ? ? 1_555 H DC 5 O2 ? ? G DG 3 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? G DG 3 O6 ? ? ? 1_555 H DC 5 N4 ? ? G DG 3 H DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? G 5CM 4 N3 B ? ? 1_555 H DG 4 N1 B ? G 5CM 4 H DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? G 5CM 4 N4 B ? ? 1_555 H DG 4 O6 B ? G 5CM 4 H DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? G 5CM 4 O2 B ? ? 1_555 H DG 4 N2 B ? G 5CM 4 H DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? G DC 5 N3 ? ? ? 1_555 H DG 3 N1 ? ? G DC 5 H DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? G DC 5 N4 ? ? ? 1_555 H DG 3 O6 ? ? G DC 5 H DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? G DC 5 O2 ? ? ? 1_555 H DG 3 N2 ? ? G DC 5 H DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? G DG 6 N1 ? ? ? 1_555 H DC 2 N3 ? ? G DG 6 H DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? G DG 6 N2 ? ? ? 1_555 H DC 2 O2 ? ? G DG 6 H DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? G DG 6 O6 ? ? ? 1_555 H DC 2 N4 ? ? G DG 6 H DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? G DT 7 N3 ? ? ? 1_555 H DA 1 N1 ? ? G DT 7 H DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? G DT 7 O4 ? ? ? 1_555 H DA 1 N6 ? ? G DT 7 H DA 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 206 ? 1_555 87.4 ? 2 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 89.8 ? 3 O ? M HOH . ? A HOH 206 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 97.8 ? 4 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 90.6 ? 5 O ? M HOH . ? A HOH 206 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 170.7 ? 6 O ? M HOH . ? A HOH 207 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? M HOH . ? A HOH 215 ? 1_555 91.2 ? 7 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 OP2 ? G DC 5 ? G DC 5 ? 1_555 163.6 ? 8 O ? M HOH . ? A HOH 206 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 OP2 ? G DC 5 ? G DC 5 ? 1_555 93.0 ? 9 O ? M HOH . ? A HOH 207 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 OP2 ? G DC 5 ? G DC 5 ? 1_555 73.9 ? 10 O ? M HOH . ? A HOH 215 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 OP2 ? G DC 5 ? G DC 5 ? 1_555 91.4 ? 11 N7 ? A DG 3 ? A DG 3 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? S HOH . ? G HOH 107 ? 1_555 97.3 ? 12 O ? M HOH . ? A HOH 206 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? S HOH . ? G HOH 107 ? 1_555 101.4 ? 13 O ? M HOH . ? A HOH 207 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? S HOH . ? G HOH 107 ? 1_555 159.7 ? 14 O ? M HOH . ? A HOH 215 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? S HOH . ? G HOH 107 ? 1_555 69.8 ? 15 OP2 ? G DC 5 ? G DC 5 ? 1_555 MN ? I MN . ? A MN 101 ? 1_555 O ? S HOH . ? G HOH 107 ? 1_555 98.7 ? 16 OP2 ? A DG 3 ? A DG 3 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 209 ? 1_555 78.4 ? 17 OP2 ? A DG 3 ? A DG 3 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 95.1 ? 18 O ? M HOH . ? A HOH 209 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 213 ? 1_555 170.7 ? 19 OP2 ? A DG 3 ? A DG 3 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 216 ? 1_555 98.8 ? 20 O ? M HOH . ? A HOH 209 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 216 ? 1_555 106.1 ? 21 O ? M HOH . ? A HOH 213 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? M HOH . ? A HOH 216 ? 1_555 68.0 ? 22 OP2 ? A DG 3 ? A DG 3 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 103 ? 1_555 165.2 ? 23 O ? M HOH . ? A HOH 209 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 103 ? 1_555 87.3 ? 24 O ? M HOH . ? A HOH 213 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 103 ? 1_555 99.5 ? 25 O ? M HOH . ? A HOH 216 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 103 ? 1_555 88.6 ? 26 OP2 ? A DG 3 ? A DG 3 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 105 ? 1_555 94.8 ? 27 O ? M HOH . ? A HOH 209 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 105 ? 1_555 86.2 ? 28 O ? M HOH . ? A HOH 213 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 105 ? 1_555 101.1 ? 29 O ? M HOH . ? A HOH 216 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 105 ? 1_555 163.2 ? 30 O ? S HOH . ? G HOH 103 ? 1_555 MN ? J MN . ? A MN 102 ? 1_555 O ? S HOH . ? G HOH 105 ? 1_555 80.5 ? 31 N7 ? D DG 3 ? D DG 3 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? P HOH . ? D HOH 203 ? 1_555 81.5 ? 32 N7 ? D DG 3 ? D DG 3 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 OP2 ? F DC 5 ? E DC 5 ? 1_555 159.7 ? 33 O ? P HOH . ? D HOH 203 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 OP2 ? F DC 5 ? E DC 5 ? 1_555 93.9 ? 34 N7 ? D DG 3 ? D DG 3 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 106 ? 1_555 88.5 ? 35 O ? P HOH . ? D HOH 203 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 106 ? 1_555 95.1 ? 36 OP2 ? F DC 5 ? E DC 5 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 106 ? 1_555 72.2 ? 37 N7 ? D DG 3 ? D DG 3 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 110 ? 1_555 91.5 ? 38 O ? P HOH . ? D HOH 203 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 110 ? 1_555 171.7 ? 39 OP2 ? F DC 5 ? E DC 5 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 110 ? 1_555 94.2 ? 40 O ? R HOH . ? E HOH 106 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 110 ? 1_555 89.2 ? 41 N7 ? D DG 3 ? D DG 3 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 112 ? 1_555 97.8 ? 42 O ? P HOH . ? D HOH 203 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 112 ? 1_555 97.3 ? 43 OP2 ? F DC 5 ? E DC 5 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 112 ? 1_555 102.4 ? 44 O ? R HOH . ? E HOH 106 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 112 ? 1_555 166.8 ? 45 O ? R HOH . ? E HOH 110 ? 1_555 MN ? K MN . ? D MN 101 ? 1_555 O ? R HOH . ? E HOH 112 ? 1_555 79.1 ? 46 OP2 ? D DG 3 ? D DG 3 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? P HOH . ? D HOH 211 ? 1_555 88.2 ? 47 OP2 ? D DG 3 ? D DG 3 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? P HOH . ? D HOH 213 ? 1_555 83.1 ? 48 O ? P HOH . ? D HOH 211 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? P HOH . ? D HOH 213 ? 1_555 89.0 ? 49 OP2 ? D DG 3 ? D DG 3 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? P HOH . ? D HOH 218 ? 1_555 96.9 ? 50 O ? P HOH . ? D HOH 211 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? P HOH . ? D HOH 218 ? 1_555 164.4 ? 51 O ? P HOH . ? D HOH 213 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? P HOH . ? D HOH 218 ? 1_555 77.0 ? 52 OP2 ? D DG 3 ? D DG 3 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 104 ? 1_555 165.1 ? 53 O ? P HOH . ? D HOH 211 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 104 ? 1_555 77.2 ? 54 O ? P HOH . ? D HOH 213 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 104 ? 1_555 93.4 ? 55 O ? P HOH . ? D HOH 218 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 104 ? 1_555 96.4 ? 56 OP2 ? D DG 3 ? D DG 3 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 108 ? 1_555 94.7 ? 57 O ? P HOH . ? D HOH 211 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 108 ? 1_555 94.8 ? 58 O ? P HOH . ? D HOH 213 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 108 ? 1_555 175.6 ? 59 O ? P HOH . ? D HOH 218 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 108 ? 1_555 99.5 ? 60 O ? R HOH . ? E HOH 104 ? 1_555 MG ? L MG . ? D MG 102 ? 1_555 O ? R HOH . ? E HOH 108 ? 1_555 89.7 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 "O5'" _pdbx_validate_symm_contact.auth_asym_id_1 D _pdbx_validate_symm_contact.auth_comp_id_1 DA _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OP2 _pdbx_validate_symm_contact.auth_asym_id_2 D _pdbx_validate_symm_contact.auth_comp_id_2 DT _pdbx_validate_symm_contact.auth_seq_id_2 7 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_546 _pdbx_validate_symm_contact.dist 1.99 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C6 A DA 1 ? ? N1 A DA 1 ? ? 1.298 1.351 -0.053 0.007 N 2 1 C5 A DA 1 ? ? N7 A DA 1 ? ? 1.347 1.388 -0.041 0.006 N 3 1 "O3'" A DT 7 ? ? "C3'" A DT 7 ? ? 1.379 1.419 -0.040 0.006 N 4 1 "O3'" B DA 1 ? ? "C3'" B DA 1 ? ? 1.373 1.419 -0.046 0.006 N 5 1 N9 B DA 1 ? ? C4 B DA 1 ? ? 1.423 1.374 0.049 0.006 N 6 1 "O3'" B DT 7 ? ? "C3'" B DT 7 ? ? 1.375 1.419 -0.044 0.006 N 7 1 "O3'" G 5CM 4 ? A P G DC 5 ? ? 1.455 1.607 -0.152 0.012 Y 8 1 "O3'" G 5CM 4 ? B P G DC 5 ? ? 1.451 1.607 -0.156 0.012 Y 9 1 "O5'" H DA 1 ? ? "C5'" H DA 1 ? ? 1.256 1.418 -0.162 0.025 N 10 1 C5 H DA 1 ? ? C6 H DA 1 ? ? 1.473 1.406 0.067 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" B DT 7 ? ? P B DT 7 ? ? OP1 B DT 7 ? ? 99.67 105.70 -6.03 0.90 N 2 1 "O3'" G DC 2 ? ? P G DG 3 ? ? OP1 G DG 3 ? ? 120.92 110.50 10.42 1.10 Y 3 1 "O3'" G 5CM 4 ? A P G DC 5 ? ? OP1 G DC 5 ? ? 120.04 110.50 9.54 1.10 Y 4 1 "O3'" G 5CM 4 ? B P G DC 5 ? ? OP1 G DC 5 ? ? 117.58 110.50 7.08 1.10 Y 5 1 N3 H DG 4 ? B C2 H DG 4 ? B N2 H DG 4 ? B 125.05 119.90 5.15 0.70 N 6 1 C8 H DG 4 ? A N9 H DG 4 ? A "C1'" H DG 4 ? A 118.62 127.00 -8.38 1.30 N 7 1 C4 H DG 4 ? A N9 H DG 4 ? A "C1'" H DG 4 ? A 135.04 126.50 8.54 1.30 N 8 1 "O3'" H DG 6 ? ? P H DT 7 ? ? OP2 H DT 7 ? ? 117.24 110.50 6.74 1.10 Y # _pdbx_entry_details.entry_id 8XPA _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5CM N1 N N N 1 5CM C2 C N N 2 5CM N3 N N N 3 5CM C4 C N N 4 5CM C5 C N N 5 5CM C5A C N N 6 5CM C6 C N N 7 5CM O2 O N N 8 5CM N4 N N N 9 5CM "C1'" C N R 10 5CM "C2'" C N N 11 5CM "C3'" C N S 12 5CM "C4'" C N R 13 5CM "O4'" O N N 14 5CM "O3'" O N N 15 5CM "C5'" C N N 16 5CM "O5'" O N N 17 5CM P P N N 18 5CM OP1 O N N 19 5CM OP2 O N N 20 5CM OP3 O N N 21 5CM H5A1 H N N 22 5CM H5A2 H N N 23 5CM H5A3 H N N 24 5CM H6 H N N 25 5CM HN41 H N N 26 5CM HN42 H N N 27 5CM "H1'" H N N 28 5CM "H2'" H N N 29 5CM "H2''" H N N 30 5CM "H3'" H N N 31 5CM "H4'" H N N 32 5CM "HO3'" H N N 33 5CM "H5'" H N N 34 5CM "H5''" H N N 35 5CM HOP2 H N N 36 5CM HOP3 H N N 37 DA OP3 O N N 38 DA P P N N 39 DA OP1 O N N 40 DA OP2 O N N 41 DA "O5'" O N N 42 DA "C5'" C N N 43 DA "C4'" C N R 44 DA "O4'" O N N 45 DA "C3'" C N S 46 DA "O3'" O N N 47 DA "C2'" C N N 48 DA "C1'" C N R 49 DA N9 N Y N 50 DA C8 C Y N 51 DA N7 N Y N 52 DA C5 C Y N 53 DA C6 C Y N 54 DA N6 N N N 55 DA N1 N Y N 56 DA C2 C Y N 57 DA N3 N Y N 58 DA C4 C Y N 59 DA HOP3 H N N 60 DA HOP2 H N N 61 DA "H5'" H N N 62 DA "H5''" H N N 63 DA "H4'" H N N 64 DA "H3'" H N N 65 DA "HO3'" H N N 66 DA "H2'" H N N 67 DA "H2''" H N N 68 DA "H1'" H N N 69 DA H8 H N N 70 DA H61 H N N 71 DA H62 H N N 72 DA H2 H N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DT OP3 O N N 145 DT P P N N 146 DT OP1 O N N 147 DT OP2 O N N 148 DT "O5'" O N N 149 DT "C5'" C N N 150 DT "C4'" C N R 151 DT "O4'" O N N 152 DT "C3'" C N S 153 DT "O3'" O N N 154 DT "C2'" C N N 155 DT "C1'" C N R 156 DT N1 N N N 157 DT C2 C N N 158 DT O2 O N N 159 DT N3 N N N 160 DT C4 C N N 161 DT O4 O N N 162 DT C5 C N N 163 DT C7 C N N 164 DT C6 C N N 165 DT HOP3 H N N 166 DT HOP2 H N N 167 DT "H5'" H N N 168 DT "H5''" H N N 169 DT "H4'" H N N 170 DT "H3'" H N N 171 DT "HO3'" H N N 172 DT "H2'" H N N 173 DT "H2''" H N N 174 DT "H1'" H N N 175 DT H3 H N N 176 DT H71 H N N 177 DT H72 H N N 178 DT H73 H N N 179 DT H6 H N N 180 HOH O O N N 181 HOH H1 H N N 182 HOH H2 H N N 183 MG MG MG N N 184 MN MN MN N N 185 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5CM N1 C2 sing N N 1 5CM N1 C6 sing N N 2 5CM N1 "C1'" sing N N 3 5CM C2 N3 sing N N 4 5CM C2 O2 doub N N 5 5CM N3 C4 doub N N 6 5CM C4 C5 sing N N 7 5CM C4 N4 sing N N 8 5CM C5 C5A sing N N 9 5CM C5 C6 doub N N 10 5CM C5A H5A1 sing N N 11 5CM C5A H5A2 sing N N 12 5CM C5A H5A3 sing N N 13 5CM C6 H6 sing N N 14 5CM N4 HN41 sing N N 15 5CM N4 HN42 sing N N 16 5CM "C1'" "C2'" sing N N 17 5CM "C1'" "O4'" sing N N 18 5CM "C1'" "H1'" sing N N 19 5CM "C2'" "C3'" sing N N 20 5CM "C2'" "H2'" sing N N 21 5CM "C2'" "H2''" sing N N 22 5CM "C3'" "C4'" sing N N 23 5CM "C3'" "O3'" sing N N 24 5CM "C3'" "H3'" sing N N 25 5CM "C4'" "O4'" sing N N 26 5CM "C4'" "C5'" sing N N 27 5CM "C4'" "H4'" sing N N 28 5CM "O3'" "HO3'" sing N N 29 5CM "C5'" "O5'" sing N N 30 5CM "C5'" "H5'" sing N N 31 5CM "C5'" "H5''" sing N N 32 5CM "O5'" P sing N N 33 5CM P OP1 doub N N 34 5CM P OP2 sing N N 35 5CM P OP3 sing N N 36 5CM OP2 HOP2 sing N N 37 5CM OP3 HOP3 sing N N 38 DA OP3 P sing N N 39 DA OP3 HOP3 sing N N 40 DA P OP1 doub N N 41 DA P OP2 sing N N 42 DA P "O5'" sing N N 43 DA OP2 HOP2 sing N N 44 DA "O5'" "C5'" sing N N 45 DA "C5'" "C4'" sing N N 46 DA "C5'" "H5'" sing N N 47 DA "C5'" "H5''" sing N N 48 DA "C4'" "O4'" sing N N 49 DA "C4'" "C3'" sing N N 50 DA "C4'" "H4'" sing N N 51 DA "O4'" "C1'" sing N N 52 DA "C3'" "O3'" sing N N 53 DA "C3'" "C2'" sing N N 54 DA "C3'" "H3'" sing N N 55 DA "O3'" "HO3'" sing N N 56 DA "C2'" "C1'" sing N N 57 DA "C2'" "H2'" sing N N 58 DA "C2'" "H2''" sing N N 59 DA "C1'" N9 sing N N 60 DA "C1'" "H1'" sing N N 61 DA N9 C8 sing Y N 62 DA N9 C4 sing Y N 63 DA C8 N7 doub Y N 64 DA C8 H8 sing N N 65 DA N7 C5 sing Y N 66 DA C5 C6 sing Y N 67 DA C5 C4 doub Y N 68 DA C6 N6 sing N N 69 DA C6 N1 doub Y N 70 DA N6 H61 sing N N 71 DA N6 H62 sing N N 72 DA N1 C2 sing Y N 73 DA C2 N3 doub Y N 74 DA C2 H2 sing N N 75 DA N3 C4 sing Y N 76 DC OP3 P sing N N 77 DC OP3 HOP3 sing N N 78 DC P OP1 doub N N 79 DC P OP2 sing N N 80 DC P "O5'" sing N N 81 DC OP2 HOP2 sing N N 82 DC "O5'" "C5'" sing N N 83 DC "C5'" "C4'" sing N N 84 DC "C5'" "H5'" sing N N 85 DC "C5'" "H5''" sing N N 86 DC "C4'" "O4'" sing N N 87 DC "C4'" "C3'" sing N N 88 DC "C4'" "H4'" sing N N 89 DC "O4'" "C1'" sing N N 90 DC "C3'" "O3'" sing N N 91 DC "C3'" "C2'" sing N N 92 DC "C3'" "H3'" sing N N 93 DC "O3'" "HO3'" sing N N 94 DC "C2'" "C1'" sing N N 95 DC "C2'" "H2'" sing N N 96 DC "C2'" "H2''" sing N N 97 DC "C1'" N1 sing N N 98 DC "C1'" "H1'" sing N N 99 DC N1 C2 sing N N 100 DC N1 C6 sing N N 101 DC C2 O2 doub N N 102 DC C2 N3 sing N N 103 DC N3 C4 doub N N 104 DC C4 N4 sing N N 105 DC C4 C5 sing N N 106 DC N4 H41 sing N N 107 DC N4 H42 sing N N 108 DC C5 C6 doub N N 109 DC C5 H5 sing N N 110 DC C6 H6 sing N N 111 DG OP3 P sing N N 112 DG OP3 HOP3 sing N N 113 DG P OP1 doub N N 114 DG P OP2 sing N N 115 DG P "O5'" sing N N 116 DG OP2 HOP2 sing N N 117 DG "O5'" "C5'" sing N N 118 DG "C5'" "C4'" sing N N 119 DG "C5'" "H5'" sing N N 120 DG "C5'" "H5''" sing N N 121 DG "C4'" "O4'" sing N N 122 DG "C4'" "C3'" sing N N 123 DG "C4'" "H4'" sing N N 124 DG "O4'" "C1'" sing N N 125 DG "C3'" "O3'" sing N N 126 DG "C3'" "C2'" sing N N 127 DG "C3'" "H3'" sing N N 128 DG "O3'" "HO3'" sing N N 129 DG "C2'" "C1'" sing N N 130 DG "C2'" "H2'" sing N N 131 DG "C2'" "H2''" sing N N 132 DG "C1'" N9 sing N N 133 DG "C1'" "H1'" sing N N 134 DG N9 C8 sing Y N 135 DG N9 C4 sing Y N 136 DG C8 N7 doub Y N 137 DG C8 H8 sing N N 138 DG N7 C5 sing Y N 139 DG C5 C6 sing N N 140 DG C5 C4 doub Y N 141 DG C6 O6 doub N N 142 DG C6 N1 sing N N 143 DG N1 C2 sing N N 144 DG N1 H1 sing N N 145 DG C2 N2 sing N N 146 DG C2 N3 doub N N 147 DG N2 H21 sing N N 148 DG N2 H22 sing N N 149 DG N3 C4 sing N N 150 DT OP3 P sing N N 151 DT OP3 HOP3 sing N N 152 DT P OP1 doub N N 153 DT P OP2 sing N N 154 DT P "O5'" sing N N 155 DT OP2 HOP2 sing N N 156 DT "O5'" "C5'" sing N N 157 DT "C5'" "C4'" sing N N 158 DT "C5'" "H5'" sing N N 159 DT "C5'" "H5''" sing N N 160 DT "C4'" "O4'" sing N N 161 DT "C4'" "C3'" sing N N 162 DT "C4'" "H4'" sing N N 163 DT "O4'" "C1'" sing N N 164 DT "C3'" "O3'" sing N N 165 DT "C3'" "C2'" sing N N 166 DT "C3'" "H3'" sing N N 167 DT "O3'" "HO3'" sing N N 168 DT "C2'" "C1'" sing N N 169 DT "C2'" "H2'" sing N N 170 DT "C2'" "H2''" sing N N 171 DT "C1'" N1 sing N N 172 DT "C1'" "H1'" sing N N 173 DT N1 C2 sing N N 174 DT N1 C6 sing N N 175 DT C2 O2 doub N N 176 DT C2 N3 sing N N 177 DT N3 C4 sing N N 178 DT N3 H3 sing N N 179 DT C4 O4 doub N N 180 DT C4 C5 sing N N 181 DT C5 C7 sing N N 182 DT C5 C6 doub N N 183 DT C7 H71 sing N N 184 DT C7 H72 sing N N 185 DT C7 H73 sing N N 186 DT C6 H6 sing N N 187 HOH O H1 sing N N 188 HOH O H2 sing N N 189 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8XPA 'double helix' 8XPA 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 7 1_555 -0.039 -0.110 0.109 5.585 -14.727 0.737 1 A_DA1:DT7_B A 1 ? B 7 ? 20 1 1 A DC 2 1_555 B DG 6 1_555 0.184 -0.254 0.189 -0.037 -11.992 -0.881 2 A_DC2:DG6_B A 2 ? B 6 ? 19 1 1 A DG 3 1_555 B DC 5 1_555 -0.196 -0.105 -0.054 2.279 -12.038 1.263 3 A_DG3:DC5_B A 3 ? B 5 ? 19 1 1 A DG 4 1_555 B 5CM 4 1_555 -0.218 -0.185 -0.067 0.175 -9.724 -0.263 4 A_DG4:5CM4_B A 4 ? B 4 ? 19 1 1 A DC 5 1_555 B DG 3 1_555 0.177 -0.207 0.265 -3.878 -9.995 -1.347 5 A_DC5:DG3_B A 5 ? B 3 ? 19 1 1 A DG 6 1_555 B DC 2 1_555 -0.139 -0.290 0.198 -1.707 -8.483 -0.933 6 A_DG6:DC2_B A 6 ? B 2 ? 19 1 1 A DT 7 1_555 B DA 1 1_555 0.085 -0.169 0.237 -11.788 -13.379 0.205 7 A_DT7:DA1_B A 7 ? B 1 ? 20 1 1 C DA 1 1_555 D DT 7 1_555 -0.166 -0.235 0.187 4.243 -14.164 1.376 8 C_DA1:DT7_D C 1 ? D 7 ? 20 1 1 C DC 2 1_555 D DG 6 1_555 0.296 -0.305 0.257 -1.628 -10.980 0.042 9 C_DC2:DG6_D C 2 ? D 6 ? 19 1 1 C DG 3 1_555 D DC 5 1_555 -0.162 -0.212 0.107 -1.929 -10.858 -1.073 10 C_DG3:DC5_D C 3 ? D 5 ? 19 1 1 C 5CM 4 1_555 D DG 4 1_555 0.145 -0.127 0.085 1.383 -9.682 -0.537 11 C_5CM4:DG4_D C 4 ? D 4 ? 19 1 1 C DC 5 1_555 D DG 3 1_555 0.060 -0.262 -0.070 -7.637 -10.296 0.492 12 C_DC5:DG3_D C 5 ? D 3 ? 19 1 1 C DG 6 1_555 D DC 2 1_555 -0.305 -0.282 0.181 -1.696 -9.889 -0.711 13 C_DG6:DC2_D C 6 ? D 2 ? 19 1 1 C DT 7 1_555 D DA 1 1_555 -0.073 -0.198 0.381 -8.150 -12.832 -1.557 14 C_DT7:DA1_D C 7 ? D 1 ? 20 1 1 E DA 1 1_555 F DT 7 1_555 -0.013 -0.345 0.148 -2.807 -8.574 0.916 15 F_DA1:DT7_E F 1 ? E 7 ? 20 1 1 E DC 2 1_555 F DG 6 1_555 0.449 -0.315 0.037 2.062 -8.341 1.366 16 F_DC2:DG6_E F 2 ? E 6 ? 19 1 1 E DG 3 1_555 F DC 5 1_555 -0.521 -0.318 0.097 -0.333 -16.675 -4.963 17 F_DG3:DC5_E F 3 ? E 5 ? 19 1 1 E DG 4 1_555 F 5CM 4 1_555 0.850 -0.473 0.003 -0.890 -5.640 -2.709 18 F_DG4:5CM4_E F 4 ? E 4 ? 19 1 1 E DC 5 1_555 F DG 3 1_555 0.036 -0.246 0.545 2.169 -15.540 -6.206 19 F_DC5:DG3_E F 5 ? E 3 ? 19 1 1 E DG 6 1_555 F DC 2 1_555 -0.288 -0.324 0.310 1.282 -14.037 -0.864 20 F_DG6:DC2_E F 6 ? E 2 ? 19 1 1 E DT 7 1_555 F DA 1 1_555 0.059 -0.226 0.356 -5.864 -6.342 3.780 21 F_DT7:DA1_E F 7 ? E 1 ? 20 1 1 G DA 1 1_555 H DT 7 1_555 0.027 -0.210 0.158 -0.349 -8.318 3.876 22 G_DA1:DT7_H G 1 ? H 7 ? 20 1 1 G DC 2 1_555 H DG 6 1_555 0.288 -0.324 0.130 5.249 -11.128 -2.861 23 G_DC2:DG6_H G 2 ? H 6 ? 19 1 1 G DG 3 1_555 H DC 5 1_555 -0.336 -0.282 0.041 -12.078 -12.605 -0.981 24 G_DG3:DC5_H G 3 ? H 5 ? 19 1 1 G 5CM 4 1_555 H DG 4 1_555 -0.129 2.115 0.598 -14.073 -5.125 -108.209 25 G_5CM4:DG4_H G 4 ? H 4 ? 19 1 1 G DC 5 1_555 H DG 3 1_555 0.571 -0.203 0.503 -4.778 -13.305 -1.593 26 G_DC5:DG3_H G 5 ? H 3 ? 19 1 1 G DG 6 1_555 H DC 2 1_555 -0.408 -0.261 0.023 -4.266 -8.024 0.894 27 G_DG6:DC2_H G 6 ? H 2 ? 19 1 1 G DT 7 1_555 H DA 1 1_555 -0.136 -0.136 0.143 -1.276 -8.429 -0.804 28 G_DT7:DA1_H G 7 ? H 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 7 1_555 A DC 2 1_555 B DG 6 1_555 0.159 -0.489 3.489 -0.419 -0.960 32.246 -0.699 -0.367 3.500 -1.728 0.755 32.263 1 AA_DA1DC2:DG6DT7_BB A 1 ? B 7 ? A 2 ? B 6 ? 1 A DC 2 1_555 B DG 6 1_555 A DG 3 1_555 B DC 5 1_555 0.444 0.715 3.482 3.080 5.877 35.184 0.243 -0.240 3.576 9.616 -5.040 35.784 2 AA_DC2DG3:DC5DG6_BB A 2 ? B 6 ? A 3 ? B 5 ? 1 A DG 3 1_555 B DC 5 1_555 A DG 4 1_555 B 5CM 4 1_555 -0.688 -0.103 3.066 -2.202 10.106 35.083 -1.478 0.812 2.961 16.331 3.558 36.530 3 AA_DG3DG4:5CM4DC5_BB A 3 ? B 5 ? A 4 ? B 4 ? 1 A DG 4 1_555 B 5CM 4 1_555 A DC 5 1_555 B DG 3 1_555 -0.166 -0.541 3.436 -3.648 1.526 32.136 -1.253 -0.378 3.405 2.743 6.559 32.372 4 AA_DG4DC5:DG35CM4_BB A 4 ? B 4 ? A 5 ? B 3 ? 1 A DC 5 1_555 B DG 3 1_555 A DG 6 1_555 B DC 2 1_555 -0.087 0.064 3.204 -0.508 8.803 34.457 -1.159 0.070 3.126 14.567 0.840 35.534 5 AA_DC5DG6:DC2DG3_BB A 5 ? B 3 ? A 6 ? B 2 ? 1 A DG 6 1_555 B DC 2 1_555 A DT 7 1_555 B DA 1 1_555 -0.164 -0.621 3.586 0.463 -1.217 30.361 -0.917 0.415 3.605 -2.322 -0.883 30.388 6 AA_DG6DT7:DA1DC2_BB A 6 ? B 2 ? A 7 ? B 1 ? 1 C DA 1 1_555 D DT 7 1_555 C DC 2 1_555 D DG 6 1_555 0.096 -0.587 3.424 -1.111 -0.137 33.201 -1.003 -0.362 3.422 -0.239 1.944 33.219 7 CC_DA1DC2:DG6DT7_DD C 1 ? D 7 ? C 2 ? D 6 ? 1 C DC 2 1_555 D DG 6 1_555 C DG 3 1_555 D DC 5 1_555 0.006 0.007 3.315 2.046 7.957 32.903 -1.288 0.323 3.224 13.782 -3.543 33.885 8 CC_DC2DG3:DC5DG6_DD C 2 ? D 6 ? C 3 ? D 5 ? 1 C DG 3 1_555 D DC 5 1_555 C 5CM 4 1_555 D DG 4 1_555 0.167 -0.465 3.222 1.982 3.128 30.859 -1.455 0.061 3.165 5.851 -3.708 31.075 9 CC_DG35CM4:DG4DC5_DD C 3 ? D 5 ? C 4 ? D 4 ? 1 C 5CM 4 1_555 D DG 4 1_555 C DC 5 1_555 D DG 3 1_555 0.707 -0.159 3.299 4.232 8.345 36.742 -1.333 -0.538 3.247 12.981 -6.583 37.875 10 CC_5CM4DC5:DG3DG4_DD C 4 ? D 4 ? C 5 ? D 3 ? 1 C DC 5 1_555 D DG 3 1_555 C DG 6 1_555 D DC 2 1_555 -0.317 0.712 3.296 -2.966 7.550 34.130 0.007 0.066 3.386 12.642 4.967 35.053 11 CC_DC5DG6:DC2DG3_DD C 5 ? D 3 ? C 6 ? D 2 ? 1 C DG 6 1_555 D DC 2 1_555 C DT 7 1_555 D DA 1 1_555 -0.174 -0.553 3.504 -1.157 -1.179 32.239 -0.770 0.093 3.525 -2.121 2.083 32.280 12 CC_DG6DT7:DA1DC2_DD C 6 ? D 2 ? C 7 ? D 1 ? 1 E DA 1 1_555 F DT 7 1_555 E DC 2 1_555 F DG 6 1_555 0.028 -0.100 3.141 0.833 0.759 29.653 -0.349 0.113 3.137 1.482 -1.628 29.674 13 FF_DA1DC2:DG6DT7_EE F 1 ? E 7 ? F 2 ? E 6 ? 1 E DC 2 1_555 F DG 6 1_555 E DG 3 1_555 F DC 5 1_555 -0.768 1.080 3.473 -6.127 4.891 38.330 0.966 0.337 3.654 7.356 9.214 39.094 14 FF_DC2DG3:DC5DG6_EE F 2 ? E 6 ? F 3 ? E 5 ? 1 E DG 3 1_555 F DC 5 1_555 E DG 4 1_555 F 5CM 4 1_555 -0.757 0.480 3.245 -2.623 3.608 36.976 0.269 0.835 3.320 5.663 4.117 37.235 15 FF_DG3DG4:5CM4DC5_EE F 3 ? E 5 ? F 4 ? E 4 ? 1 E DG 4 1_555 F 5CM 4 1_555 E DC 5 1_555 F DG 3 1_555 -0.717 -0.117 3.285 -6.470 -1.384 30.745 0.051 0.077 3.364 -2.573 12.029 31.432 16 FF_DG4DC5:DG35CM4_EE F 4 ? E 4 ? F 5 ? E 3 ? 1 E DC 5 1_555 F DG 3 1_555 E DG 6 1_555 F DC 2 1_555 0.509 0.333 3.460 2.282 2.127 37.017 0.221 -0.475 3.497 3.342 -3.587 37.143 17 FF_DC5DG6:DC2DG3_EE F 5 ? E 3 ? F 6 ? E 2 ? 1 E DG 6 1_555 F DC 2 1_555 E DT 7 1_555 F DA 1 1_555 0.753 -0.280 3.473 -0.035 -4.040 33.744 0.210 -1.295 3.482 -6.929 0.059 33.978 18 FF_DG6DT7:DA1DC2_EE F 6 ? E 2 ? F 7 ? E 1 ? 1 E DT 7 1_555 F DA 1 1_555 G DA 1 1_555 H DT 7 1_555 -0.105 1.016 3.403 1.283 -3.651 -24.589 -1.190 0.167 3.515 8.505 2.989 -24.887 19 FG_DT7DA1:DT7DA1_HE F 7 ? E 1 ? G 1 ? H 7 ? 1 G DA 1 1_555 H DT 7 1_555 G DC 2 1_555 H DG 6 1_555 -0.734 -0.190 3.134 -0.587 -0.828 31.120 -0.203 1.259 3.151 -1.544 1.093 31.136 20 GG_DA1DC2:DG6DT7_HH G 1 ? H 7 ? G 2 ? H 6 ? 1 G DC 2 1_555 H DG 6 1_555 G DG 3 1_555 H DC 5 1_555 -0.395 1.471 3.865 -2.181 -1.051 42.928 2.130 0.285 3.844 -1.434 2.977 42.993 21 GG_DC2DG3:DC5DG6_HH G 2 ? H 6 ? G 3 ? H 5 ? 1 G DG 3 1_555 H DC 5 1_555 G 5CM 4 1_555 H DG 4 1_555 0.759 -0.469 3.000 -1.365 6.681 80.032 -0.524 -0.621 2.949 5.187 1.060 80.274 22 GG_DG35CM4:DG4DC5_HH G 3 ? H 5 ? G 4 ? H 4 ? 1 G 5CM 4 1_555 H DG 4 1_555 G DC 5 1_555 H DG 3 1_555 0.654 0.845 3.507 -1.863 -2.644 -16.918 -0.986 0.890 3.645 8.881 -6.259 -17.223 23 GG_5CM4DC5:DG3DG4_HH G 4 ? H 4 ? G 5 ? H 3 ? 1 G DC 5 1_555 H DG 3 1_555 G DG 6 1_555 H DC 2 1_555 0.439 0.790 3.366 8.070 3.780 39.898 0.694 0.307 3.445 5.457 -11.651 40.842 24 GG_DC5DG6:DC2DG3_HH G 5 ? H 3 ? G 6 ? H 2 ? 1 G DG 6 1_555 H DC 2 1_555 G DT 7 1_555 H DA 1 1_555 0.080 -0.151 3.239 -1.093 0.136 27.889 -0.345 -0.424 3.233 0.283 2.266 27.910 25 GG_DG6DT7:DA1DC2_HH G 6 ? H 2 ? G 7 ? H 1 ? # _pdbx_audit_support.funding_organization 'Ministry of Science and Technology (MoST, Taiwan)' _pdbx_audit_support.country Taiwan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 5CM ? ? 5CM ? ? 'SUBJECT OF INVESTIGATION' ? 2 MG ? ? MG ? ? 'SUBJECT OF INVESTIGATION' ? 3 MN ? ? MN ? ? 'SUBJECT OF INVESTIGATION' ? # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 6JV5 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8XPA _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.025360 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009694 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021625 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022749 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C MG MN N O P # loop_