HEADER REPLICATION 07-JAN-24 8XRG TITLE THE CRYSTAL STRUCTURE OF ASFVTOPII ATPASE DOMAIN IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TOPOISOMERASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA TOPOISOMERASE II; COMPND 5 EC: 5.6.2.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AFRICAN SWINE FEVER VIRUS BA71V; SOURCE 3 ORGANISM_TAXID: 10498; SOURCE 4 GENE: TOP, BA71V-112, P1192R; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TOPOISOMERASES 2, COMPLEX, ADP, REPLICATION EXPDTA X-RAY DIFFRACTION AUTHOR J.YANG,J.H.GAN REVDAT 1 07-AUG-24 8XRG 0 JRNL AUTH J.YANG,J.H.GAN JRNL TITL THE CRYSTAL STRUCTURE OF ASFVTOPII ATPASE DOMAIN IN COMPLEX JRNL TITL 2 WITH ADP JRNL REF NAT COMMUN 2024 JRNL REFN ESSN 2041-1723 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.1_4122: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59352 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 2927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7200 - 4.4300 0.99 2947 160 0.1774 0.1822 REMARK 3 2 4.4300 - 3.5200 1.00 2779 155 0.1560 0.1710 REMARK 3 3 3.5200 - 3.0700 1.00 2748 146 0.1773 0.1821 REMARK 3 4 3.0700 - 2.7900 1.00 2730 138 0.1948 0.2166 REMARK 3 5 2.7900 - 2.5900 1.00 2710 128 0.1941 0.2103 REMARK 3 6 2.5900 - 2.4400 1.00 2703 141 0.1839 0.2166 REMARK 3 7 2.4400 - 2.3200 1.00 2697 136 0.1869 0.2025 REMARK 3 8 2.3200 - 2.2200 1.00 2695 131 0.1851 0.2065 REMARK 3 9 2.2200 - 2.1300 1.00 2669 118 0.1870 0.2288 REMARK 3 10 2.1300 - 2.0600 1.00 2659 160 0.1870 0.2459 REMARK 3 11 2.0600 - 1.9900 1.00 2667 128 0.1844 0.2383 REMARK 3 12 1.9900 - 1.9400 1.00 2636 156 0.1922 0.2317 REMARK 3 13 1.9400 - 1.8900 1.00 2651 148 0.1968 0.2144 REMARK 3 14 1.8900 - 1.8400 1.00 2640 144 0.1965 0.2344 REMARK 3 15 1.8400 - 1.8000 1.00 2645 141 0.2046 0.2331 REMARK 3 16 1.8000 - 1.7600 1.00 2650 127 0.2157 0.2443 REMARK 3 17 1.7600 - 1.7200 1.00 2656 136 0.2167 0.2762 REMARK 3 18 1.7200 - 1.6900 1.00 2622 145 0.2321 0.2678 REMARK 3 19 1.6900 - 1.6600 1.00 2634 135 0.2450 0.2999 REMARK 3 20 1.6600 - 1.6300 1.00 2654 118 0.2540 0.2807 REMARK 3 21 1.6300 - 1.6100 1.00 2633 136 0.2756 0.2873 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3051 REMARK 3 ANGLE : 1.082 4156 REMARK 3 CHIRALITY : 0.068 489 REMARK 3 PLANARITY : 0.013 519 REMARK 3 DIHEDRAL : 15.326 1072 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 32.3645 12.5320 -7.4374 REMARK 3 T TENSOR REMARK 3 T11: 0.2053 T22: 0.1115 REMARK 3 T33: 0.1426 T12: -0.0104 REMARK 3 T13: -0.0138 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.0101 L22: 0.8122 REMARK 3 L33: 0.9099 L12: -0.0080 REMARK 3 L13: -0.4904 L23: 0.1956 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: 0.0612 S13: 0.0146 REMARK 3 S21: -0.0676 S22: 0.0129 S23: -0.0253 REMARK 3 S31: -0.1381 S32: -0.0101 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300044037. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979191 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59466 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 60.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.10 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 1.29000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM PHOSPHATE DIBASIC, 20% REMARK 280 W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.84600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 139.69200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 104.76900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 174.61500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 34.92300 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 69.84600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 139.69200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 174.61500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 104.76900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 34.92300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 726 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 730 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 771 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 37 REMARK 465 ASP A 38 REMARK 465 GLU A 39 REMARK 465 LYS A 335 REMARK 465 ASP A 336 REMARK 465 LYS A 337 REMARK 465 ASN A 338 REMARK 465 ARG A 339 REMARK 465 LYS A 340 REMARK 465 THR A 341 REMARK 465 SER A 405 REMARK 465 LYS A 406 REMARK 465 LYS A 407 REMARK 465 ASP A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 2 CB CG CD OE1 OE2 REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 ASP A 40 CG OD1 OD2 REMARK 470 SER A 74 OG REMARK 470 THR A 76 OG1 CG2 REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 GLU A 106 CG CD OE1 OE2 REMARK 470 LYS A 113 CG CD CE NZ REMARK 470 LYS A 136 CG CD CE NZ REMARK 470 ARG A 189 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 190 CD OE1 OE2 REMARK 470 GLU A 203 CD OE1 OE2 REMARK 470 GLU A 212 CG CD OE1 OE2 REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 LYS A 244 CG CD CE NZ REMARK 470 ARG A 247 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 256 CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 LYS A 296 CG CD CE NZ REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 LYS A 329 CD CE NZ REMARK 470 GLN A 331 CG CD OE1 NE2 REMARK 470 GLN A 332 CG CD OE1 NE2 REMARK 470 THR A 333 OG1 CG2 REMARK 470 ILE A 334 CG1 CG2 CD1 REMARK 470 THR A 342 N CA CB OG1 CG2 REMARK 470 LEU A 343 CB CG CD1 CD2 REMARK 470 ARG A 344 CB CG CD NE CZ NH1 NH2 REMARK 470 ASP A 345 CG OD1 OD2 REMARK 470 GLN A 402 CG CD OE1 NE2 REMARK 470 SER A 403 OG REMARK 470 ILE A 404 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 47 51.25 -92.85 REMARK 500 ASP A 96 -154.42 -90.64 REMARK 500 THR A 143 -38.16 -154.86 REMARK 500 ARG A 247 39.32 -95.11 REMARK 500 ARG A 247 38.31 -95.11 REMARK 500 THR A 248 59.52 -110.69 REMARK 500 THR A 248 57.61 -108.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 194 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 800 DISTANCE = 6.30 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 64 OD1 REMARK 620 2 ADP A 501 O3B 93.7 REMARK 620 3 ADP A 501 O1A 90.0 85.2 REMARK 620 4 PO4 A 502 O3 166.1 94.3 102.0 REMARK 620 5 HOH A 619 O 86.1 176.5 91.3 86.6 REMARK 620 6 HOH A 663 O 80.1 91.5 169.3 88.3 91.9 REMARK 620 N 1 2 3 4 5 DBREF 8XRG A 1 408 UNP Q00942 TOP2_ASFB7 1 408 SEQRES 1 A 408 MET GLU ALA PHE GLU ILE SER ASP PHE LYS GLU HIS ALA SEQRES 2 A 408 LYS LYS LYS SER MET TRP ALA GLY ALA LEU ASN LYS VAL SEQRES 3 A 408 THR ILE SER GLY LEU MET GLY VAL PHE THR GLU ASP GLU SEQRES 4 A 408 ASP LEU MET ALA LEU PRO ILE HIS ARG ASP HIS CYS PRO SEQRES 5 A 408 ALA LEU LEU LYS ILE PHE ASP GLU LEU ILE VAL ASN ALA SEQRES 6 A 408 THR ASP HIS GLU ARG ALA CYS HIS SER LYS THR LYS LYS SEQRES 7 A 408 VAL THR TYR ILE LYS ILE SER PHE ASP LYS GLY VAL PHE SEQRES 8 A 408 SER CYS GLU ASN ASP GLY PRO GLY ILE PRO ILE ALA LYS SEQRES 9 A 408 HIS GLU GLN ALA SER LEU ILE ALA LYS ARG ASP VAL TYR SEQRES 10 A 408 VAL PRO GLU VAL ALA SER CYS PHE PHE LEU ALA GLY THR SEQRES 11 A 408 ASN ILE ASN LYS ALA LYS ASP CYS ILE LYS GLY GLY THR SEQRES 12 A 408 ASN GLY VAL GLY LEU LYS LEU ALA MET VAL HIS SER GLN SEQRES 13 A 408 TRP ALA ILE LEU THR THR ALA ASP GLY ALA GLN LYS TYR SEQRES 14 A 408 VAL GLN GLN ILE ASN GLN ARG LEU ASP ILE ILE GLU PRO SEQRES 15 A 408 PRO THR ILE THR PRO SER ARG GLU MET PHE THR ARG ILE SEQRES 16 A 408 GLU LEU MET PRO VAL TYR GLN GLU LEU GLY TYR ALA GLU SEQRES 17 A 408 PRO LEU SER GLU THR GLU GLN ALA ASP LEU SER ALA TRP SEQRES 18 A 408 ILE TYR LEU ARG ALA CYS GLN CYS ALA ALA TYR VAL GLY SEQRES 19 A 408 LYS GLY THR THR ILE TYR TYR ASN ASP LYS PRO CYS ARG SEQRES 20 A 408 THR GLY SER VAL MET ALA LEU ALA LYS MET TYR THR LEU SEQRES 21 A 408 LEU SER ALA PRO ASN SER THR ILE HIS THR ALA THR ILE SEQRES 22 A 408 LYS ALA ASP ALA LYS PRO TYR SER LEU HIS PRO LEU GLN SEQRES 23 A 408 VAL ALA ALA VAL VAL SER PRO LYS PHE LYS LYS PHE GLU SEQRES 24 A 408 HIS VAL SER ILE ILE ASN GLY VAL ASN CYS VAL LYS GLY SEQRES 25 A 408 GLU HIS VAL THR PHE LEU LYS LYS THR ILE ASN GLU MET SEQRES 26 A 408 VAL ILE LYS LYS PHE GLN GLN THR ILE LYS ASP LYS ASN SEQRES 27 A 408 ARG LYS THR THR LEU ARG ASP SER CYS SER ASN ILE PHE SEQRES 28 A 408 VAL VAL ILE VAL GLY SER ILE PRO GLY ILE GLU TRP THR SEQRES 29 A 408 GLY GLN ARG LYS ASP GLU LEU SER ILE ALA GLU ASN VAL SEQRES 30 A 408 PHE LYS THR HIS TYR SER ILE PRO SER SER PHE LEU THR SEQRES 31 A 408 SER MET THR ARG SER ILE VAL ASP ILE LEU LEU GLN SER SEQRES 32 A 408 ILE SER LYS LYS ASP HET ADP A 501 27 HET PO4 A 502 5 HET MG A 503 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 PO4 O4 P 3- FORMUL 4 MG MG 2+ FORMUL 5 HOH *200(H2 O) HELIX 1 AA1 ASP A 8 LYS A 16 1 9 HELIX 2 AA2 CYS A 51 HIS A 73 1 23 HELIX 3 AA3 HIS A 105 LYS A 113 1 9 HELIX 4 AA4 TYR A 117 PHE A 125 1 9 HELIX 5 AA5 VAL A 146 HIS A 154 1 9 HELIX 6 AA6 SER A 211 VAL A 233 1 23 HELIX 7 AA7 SER A 250 LEU A 260 1 11 HELIX 8 AA8 PRO A 279 HIS A 283 5 5 HELIX 9 AA9 GLY A 312 ILE A 334 1 23 HELIX 10 AB1 LEU A 343 SER A 348 1 6 HELIX 11 AB2 GLU A 375 HIS A 381 1 7 HELIX 12 AB3 PRO A 385 ILE A 404 1 20 SHEET 1 AA1 2 MET A 32 PHE A 35 0 SHEET 2 AA1 2 MET A 42 PRO A 45 -1 O LEU A 44 N GLY A 33 SHEET 1 AA2 3 ILE A 179 ILE A 180 0 SHEET 2 AA2 3 GLN A 167 ASN A 174 -1 N ASN A 174 O ILE A 179 SHEET 3 AA2 3 THR A 184 PRO A 187 -1 O THR A 184 N VAL A 170 SHEET 1 AA3 8 ILE A 179 ILE A 180 0 SHEET 2 AA3 8 GLN A 167 ASN A 174 -1 N ASN A 174 O ILE A 179 SHEET 3 AA3 8 SER A 155 ASP A 164 -1 N THR A 162 O TYR A 169 SHEET 4 AA3 8 MET A 191 PRO A 199 -1 O ARG A 194 N THR A 161 SHEET 5 AA3 8 VAL A 90 ASN A 95 -1 N PHE A 91 O LEU A 197 SHEET 6 AA3 8 TYR A 81 ASP A 87 -1 N LYS A 83 O GLU A 94 SHEET 7 AA3 8 THR A 238 TYR A 241 1 O TYR A 240 N ILE A 84 SHEET 8 AA3 8 LYS A 244 PRO A 245 -1 O LYS A 244 N TYR A 241 SHEET 1 AA4 6 VAL A 307 CYS A 309 0 SHEET 2 AA4 6 GLU A 299 ILE A 304 -1 N SER A 302 O CYS A 309 SHEET 3 AA4 6 ILE A 350 GLY A 356 1 O ILE A 354 N VAL A 301 SHEET 4 AA4 6 LEU A 285 VAL A 291 -1 N ALA A 288 O VAL A 353 SHEET 5 AA4 6 HIS A 269 ALA A 275 -1 N ILE A 273 O LEU A 285 SHEET 6 AA4 6 TYR A 382 SER A 383 -1 O SER A 383 N LYS A 274 SHEET 1 AA5 2 GLU A 362 TRP A 363 0 SHEET 2 AA5 2 LEU A 371 SER A 372 -1 O SER A 372 N GLU A 362 LINK OD1 ASN A 64 MG MG A 503 1555 1555 2.11 LINK O3B ADP A 501 MG MG A 503 1555 1555 2.04 LINK O1A ADP A 501 MG MG A 503 1555 1555 2.10 LINK O3 PO4 A 502 MG MG A 503 1555 1555 1.95 LINK MG MG A 503 O HOH A 619 1555 1555 2.09 LINK MG MG A 503 O HOH A 663 1555 1555 2.14 CISPEP 1 GLU A 208 PRO A 209 0 -0.81 CISPEP 2 LYS A 278 PRO A 279 0 0.41 CRYST1 85.256 85.256 209.538 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011729 0.006772 0.000000 0.00000 SCALE2 0.000000 0.013544 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004772 0.00000