HEADER TRANSFERASE 10-JAN-24 8XSV TITLE CRYSTAL STRUCTURE OF PPAT MUTANT P8A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: DEPHOSPHO-COA PYROPHOSPHORYLASE,PANTETHEINE-PHOSPHATE COMPND 5 ADENYLYLTRANSFERASE,PPAT; COMPND 6 EC: 2.7.7.3; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI 26695; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 GENE: COAD, KDTB, HP_1475; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE MUTANT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR H.S.YIN REVDAT 1 30-OCT-24 8XSV 0 JRNL AUTH H.S.YIN JRNL TITL CRYSTAL STRUCTURE OF PPAT MUTANT P8A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 89.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 68551 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3661 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3485 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 264 REMARK 3 SOLVENT ATOMS : 619 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.325 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7776 ; 0.027 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10528 ; 2.485 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 923 ; 6.732 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;34.656 ;24.151 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1373 ;18.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;19.672 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1199 ; 0.186 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5600 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7776 ;16.174 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 207 ;17.622 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 8026 ;10.517 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 8XSV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300044105. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75207 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 89.980 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3OTW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, PEG500 MME, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 47.94650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.44900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.94650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.44900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -207.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 155 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA GLY D 9 O HOH D 3119 1.84 REMARK 500 CB SER A 130 O HOH A 3106 1.85 REMARK 500 CB LEU F 116 O HOH F 3167 1.88 REMARK 500 CB MET D 119 O HOH D 3174 1.92 REMARK 500 CA LYS B 107 O HOH B 3103 1.94 REMARK 500 CG1 VAL D 92 O HOH A 3174 1.94 REMARK 500 CB SER C 143 O HOH C 3115 1.95 REMARK 500 CA ASN A 106 O HOH A 3105 1.96 REMARK 500 CG2 ILE A 150 O HOH A 3156 2.00 REMARK 500 CD1 LEU D 116 O HOH D 3142 2.00 REMARK 500 CE LYS A 3 O HOH A 3104 2.02 REMARK 500 CE2 TYR B 117 O HOH B 3101 2.04 REMARK 500 CB ASP B 95 O HOH B 3106 2.05 REMARK 500 O MET E 1 N LYS E 3 2.06 REMARK 500 O HOH B 3122 O HOH B 3132 2.06 REMARK 500 CA GLN F 123 O HOH F 3155 2.07 REMARK 500 NZ LYS B 42 O26 COD B 3000 2.07 REMARK 500 NZ LYS F 42 O26 COD F 3000 2.09 REMARK 500 CD1 LEU A 32 O HOH A 3128 2.10 REMARK 500 CD2 LEU E 122 O HOH F 3155 2.10 REMARK 500 CD1 PHE D 96 O HOH E 3174 2.12 REMARK 500 CA GLY F 5 O HOH F 3104 2.12 REMARK 500 C30 COD F 3000 O HOH F 3107 2.14 REMARK 500 S44 COD F 3000 O HOH F 3173 2.14 REMARK 500 CE MET D 1 O HOH E 3146 2.14 REMARK 500 CB LYS E 84 O HOH E 3159 2.15 REMARK 500 CE MET B 119 O HOH B 3184 2.15 REMARK 500 CG1 VAL E 85 O HOH E 3113 2.16 REMARK 500 CB GLU A 149 O HOH A 3172 2.16 REMARK 500 CB PHE A 96 O HOH A 3175 2.16 REMARK 500 CB LYS A 31 O HOH A 3140 2.16 REMARK 500 O SER E 40 O LYS E 42 2.17 REMARK 500 O HOH B 3134 O HOH B 3198 2.17 REMARK 500 CB VAL C 146 O HOH C 3101 2.18 REMARK 500 CB ALA D 75 O HOH D 3162 2.18 REMARK 500 O SER C 40 O LYS C 42 2.18 REMARK 500 CD1 ILE C 33 O HOH C 3179 2.18 REMARK 500 CB ASN B 124 O HOH B 3112 2.19 REMARK 500 C18 COD C 3000 O HOH C 3116 2.19 REMARK 500 CB VAL C 65 O HOH C 3174 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 149 O HOH D 3163 3446 2.07 REMARK 500 NZ LYS F 63 O HOH E 3180 4455 2.10 REMARK 500 O HOH E 3112 O HOH F 3180 4555 2.14 REMARK 500 OE2 GLU A 149 O HOH D 3163 3446 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 23 CG HIS A 23 CD2 0.058 REMARK 500 HIS A 38 CG HIS A 38 CD2 0.057 REMARK 500 HIS A 111 CG HIS A 111 CD2 0.074 REMARK 500 HIS A 144 CG HIS A 144 CD2 0.090 REMARK 500 HIS B 23 CG HIS B 23 CD2 0.075 REMARK 500 HIS B 38 CG HIS B 38 CD2 0.059 REMARK 500 ARG B 51 N ARG B 51 CA 0.127 REMARK 500 HIS C 18 CG HIS C 18 CD2 0.069 REMARK 500 ARG C 24 CZ ARG C 24 NH2 -0.087 REMARK 500 HIS C 38 CG HIS C 38 CD2 0.066 REMARK 500 HIS C 82 CG HIS C 82 CD2 0.055 REMARK 500 GLY C 103 N GLY C 103 CA 0.094 REMARK 500 HIS C 111 CG HIS C 111 CD2 0.066 REMARK 500 HIS C 144 CG HIS C 144 CD2 0.082 REMARK 500 HIS D 23 CG HIS D 23 CD2 0.058 REMARK 500 GLU D 97 CD GLU D 97 OE2 0.097 REMARK 500 GLU D 114 CD GLU D 114 OE2 0.068 REMARK 500 HIS D 138 CG HIS D 138 CD2 0.063 REMARK 500 GLU E 97 CD GLU E 97 OE2 0.080 REMARK 500 SER E 108 CB SER E 108 OG -0.087 REMARK 500 HIS E 111 CG HIS E 111 CD2 0.057 REMARK 500 HIS E 144 CG HIS E 144 CD2 0.079 REMARK 500 GLU F 27 CD GLU F 27 OE1 -0.075 REMARK 500 ARG F 51 N ARG F 51 CA 0.122 REMARK 500 HIS F 111 CG HIS F 111 CD2 0.077 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 73 CA - CB - CG ANGL. DEV. = 16.1 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 LEU B 28 CB - CG - CD1 ANGL. DEV. = 11.3 DEGREES REMARK 500 LEU B 90 CB - CG - CD1 ANGL. DEV. = -11.8 DEGREES REMARK 500 ASP B 95 CB - CG - OD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 133 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS C 3 CD - CE - NZ ANGL. DEV. = 15.3 DEGREES REMARK 500 ASN C 43 C - N - CA ANGL. DEV. = -17.7 DEGREES REMARK 500 LEU C 73 CA - CB - CG ANGL. DEV. = 17.4 DEGREES REMARK 500 ARG C 133 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASN D 43 C - N - CA ANGL. DEV. = -16.4 DEGREES REMARK 500 LEU D 116 CA - CB - CG ANGL. DEV. = 16.2 DEGREES REMARK 500 ASN E 43 C - N - CA ANGL. DEV. = -16.3 DEGREES REMARK 500 SER E 108 CB - CA - C ANGL. DEV. = -11.7 DEGREES REMARK 500 ARG F 24 CG - CD - NE ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG F 24 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASN F 43 C - N - CA ANGL. DEV. = -23.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 12 75.57 -119.57 REMARK 500 LYS B 139 46.65 26.98 REMARK 500 ASP D 12 76.70 -116.72 REMARK 500 GLN E 2 -30.35 42.54 REMARK 500 ASN F 43 76.96 -119.52 REMARK 500 ASN F 110 101.17 -162.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B3212 DISTANCE = 6.33 ANGSTROMS REMARK 525 HOH D3203 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH D3204 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH E3195 DISTANCE = 6.88 ANGSTROMS REMARK 525 HOH E3196 DISTANCE = 9.06 ANGSTROMS DBREF 8XSV A 1 155 UNP O26010 COAD_HELPY 1 155 DBREF 8XSV B 1 155 UNP O26010 COAD_HELPY 1 155 DBREF 8XSV C 1 155 UNP O26010 COAD_HELPY 1 155 DBREF 8XSV D 1 155 UNP O26010 COAD_HELPY 1 155 DBREF 8XSV E 1 155 UNP O26010 COAD_HELPY 1 155 DBREF 8XSV F 1 155 UNP O26010 COAD_HELPY 1 155 SEQADV 8XSV ALA A 8 UNP O26010 PRO 8 ENGINEERED MUTATION SEQADV 8XSV ALA B 8 UNP O26010 PRO 8 ENGINEERED MUTATION SEQADV 8XSV ALA C 8 UNP O26010 PRO 8 ENGINEERED MUTATION SEQADV 8XSV ALA D 8 UNP O26010 PRO 8 ENGINEERED MUTATION SEQADV 8XSV ALA E 8 UNP O26010 PRO 8 ENGINEERED MUTATION SEQADV 8XSV ALA F 8 UNP O26010 PRO 8 ENGINEERED MUTATION SEQRES 1 A 155 MET GLN LYS ILE GLY ILE TYR ALA GLY THR PHE ASP PRO SEQRES 2 A 155 VAL THR ASN GLY HIS ILE ASP ILE ILE HIS ARG SER SER SEQRES 3 A 155 GLU LEU PHE GLU LYS LEU ILE VAL ALA VAL ALA HIS SER SEQRES 4 A 155 SER ALA LYS ASN PRO MET PHE SER LEU ASP GLU ARG LEU SEQRES 5 A 155 LYS MET ILE GLN LEU ALA THR LYS SER PHE LYS ASN VAL SEQRES 6 A 155 GLU CYS VAL ALA PHE GLU GLY LEU LEU ALA ASN LEU ALA SEQRES 7 A 155 LYS GLU TYR HIS CYS LYS VAL LEU VAL ARG GLY LEU ARG SEQRES 8 A 155 VAL VAL SER ASP PHE GLU TYR GLU LEU GLN MET GLY TYR SEQRES 9 A 155 ALA ASN LYS SER LEU ASN HIS GLU LEU GLU THR LEU TYR SEQRES 10 A 155 PHE MET PRO THR LEU GLN ASN ALA PHE ILE SER SER SER SEQRES 11 A 155 ILE VAL ARG SER ILE ILE ALA HIS LYS GLY ASP ALA SER SEQRES 12 A 155 HIS LEU VAL PRO LYS GLU ILE TYR PRO LEU ILE SER SEQRES 1 B 155 MET GLN LYS ILE GLY ILE TYR ALA GLY THR PHE ASP PRO SEQRES 2 B 155 VAL THR ASN GLY HIS ILE ASP ILE ILE HIS ARG SER SER SEQRES 3 B 155 GLU LEU PHE GLU LYS LEU ILE VAL ALA VAL ALA HIS SER SEQRES 4 B 155 SER ALA LYS ASN PRO MET PHE SER LEU ASP GLU ARG LEU SEQRES 5 B 155 LYS MET ILE GLN LEU ALA THR LYS SER PHE LYS ASN VAL SEQRES 6 B 155 GLU CYS VAL ALA PHE GLU GLY LEU LEU ALA ASN LEU ALA SEQRES 7 B 155 LYS GLU TYR HIS CYS LYS VAL LEU VAL ARG GLY LEU ARG SEQRES 8 B 155 VAL VAL SER ASP PHE GLU TYR GLU LEU GLN MET GLY TYR SEQRES 9 B 155 ALA ASN LYS SER LEU ASN HIS GLU LEU GLU THR LEU TYR SEQRES 10 B 155 PHE MET PRO THR LEU GLN ASN ALA PHE ILE SER SER SER SEQRES 11 B 155 ILE VAL ARG SER ILE ILE ALA HIS LYS GLY ASP ALA SER SEQRES 12 B 155 HIS LEU VAL PRO LYS GLU ILE TYR PRO LEU ILE SER SEQRES 1 C 155 MET GLN LYS ILE GLY ILE TYR ALA GLY THR PHE ASP PRO SEQRES 2 C 155 VAL THR ASN GLY HIS ILE ASP ILE ILE HIS ARG SER SER SEQRES 3 C 155 GLU LEU PHE GLU LYS LEU ILE VAL ALA VAL ALA HIS SER SEQRES 4 C 155 SER ALA LYS ASN PRO MET PHE SER LEU ASP GLU ARG LEU SEQRES 5 C 155 LYS MET ILE GLN LEU ALA THR LYS SER PHE LYS ASN VAL SEQRES 6 C 155 GLU CYS VAL ALA PHE GLU GLY LEU LEU ALA ASN LEU ALA SEQRES 7 C 155 LYS GLU TYR HIS CYS LYS VAL LEU VAL ARG GLY LEU ARG SEQRES 8 C 155 VAL VAL SER ASP PHE GLU TYR GLU LEU GLN MET GLY TYR SEQRES 9 C 155 ALA ASN LYS SER LEU ASN HIS GLU LEU GLU THR LEU TYR SEQRES 10 C 155 PHE MET PRO THR LEU GLN ASN ALA PHE ILE SER SER SER SEQRES 11 C 155 ILE VAL ARG SER ILE ILE ALA HIS LYS GLY ASP ALA SER SEQRES 12 C 155 HIS LEU VAL PRO LYS GLU ILE TYR PRO LEU ILE SER SEQRES 1 D 155 MET GLN LYS ILE GLY ILE TYR ALA GLY THR PHE ASP PRO SEQRES 2 D 155 VAL THR ASN GLY HIS ILE ASP ILE ILE HIS ARG SER SER SEQRES 3 D 155 GLU LEU PHE GLU LYS LEU ILE VAL ALA VAL ALA HIS SER SEQRES 4 D 155 SER ALA LYS ASN PRO MET PHE SER LEU ASP GLU ARG LEU SEQRES 5 D 155 LYS MET ILE GLN LEU ALA THR LYS SER PHE LYS ASN VAL SEQRES 6 D 155 GLU CYS VAL ALA PHE GLU GLY LEU LEU ALA ASN LEU ALA SEQRES 7 D 155 LYS GLU TYR HIS CYS LYS VAL LEU VAL ARG GLY LEU ARG SEQRES 8 D 155 VAL VAL SER ASP PHE GLU TYR GLU LEU GLN MET GLY TYR SEQRES 9 D 155 ALA ASN LYS SER LEU ASN HIS GLU LEU GLU THR LEU TYR SEQRES 10 D 155 PHE MET PRO THR LEU GLN ASN ALA PHE ILE SER SER SER SEQRES 11 D 155 ILE VAL ARG SER ILE ILE ALA HIS LYS GLY ASP ALA SER SEQRES 12 D 155 HIS LEU VAL PRO LYS GLU ILE TYR PRO LEU ILE SER SEQRES 1 E 155 MET GLN LYS ILE GLY ILE TYR ALA GLY THR PHE ASP PRO SEQRES 2 E 155 VAL THR ASN GLY HIS ILE ASP ILE ILE HIS ARG SER SER SEQRES 3 E 155 GLU LEU PHE GLU LYS LEU ILE VAL ALA VAL ALA HIS SER SEQRES 4 E 155 SER ALA LYS ASN PRO MET PHE SER LEU ASP GLU ARG LEU SEQRES 5 E 155 LYS MET ILE GLN LEU ALA THR LYS SER PHE LYS ASN VAL SEQRES 6 E 155 GLU CYS VAL ALA PHE GLU GLY LEU LEU ALA ASN LEU ALA SEQRES 7 E 155 LYS GLU TYR HIS CYS LYS VAL LEU VAL ARG GLY LEU ARG SEQRES 8 E 155 VAL VAL SER ASP PHE GLU TYR GLU LEU GLN MET GLY TYR SEQRES 9 E 155 ALA ASN LYS SER LEU ASN HIS GLU LEU GLU THR LEU TYR SEQRES 10 E 155 PHE MET PRO THR LEU GLN ASN ALA PHE ILE SER SER SER SEQRES 11 E 155 ILE VAL ARG SER ILE ILE ALA HIS LYS GLY ASP ALA SER SEQRES 12 E 155 HIS LEU VAL PRO LYS GLU ILE TYR PRO LEU ILE SER SEQRES 1 F 155 MET GLN LYS ILE GLY ILE TYR ALA GLY THR PHE ASP PRO SEQRES 2 F 155 VAL THR ASN GLY HIS ILE ASP ILE ILE HIS ARG SER SER SEQRES 3 F 155 GLU LEU PHE GLU LYS LEU ILE VAL ALA VAL ALA HIS SER SEQRES 4 F 155 SER ALA LYS ASN PRO MET PHE SER LEU ASP GLU ARG LEU SEQRES 5 F 155 LYS MET ILE GLN LEU ALA THR LYS SER PHE LYS ASN VAL SEQRES 6 F 155 GLU CYS VAL ALA PHE GLU GLY LEU LEU ALA ASN LEU ALA SEQRES 7 F 155 LYS GLU TYR HIS CYS LYS VAL LEU VAL ARG GLY LEU ARG SEQRES 8 F 155 VAL VAL SER ASP PHE GLU TYR GLU LEU GLN MET GLY TYR SEQRES 9 F 155 ALA ASN LYS SER LEU ASN HIS GLU LEU GLU THR LEU TYR SEQRES 10 F 155 PHE MET PRO THR LEU GLN ASN ALA PHE ILE SER SER SER SEQRES 11 F 155 ILE VAL ARG SER ILE ILE ALA HIS LYS GLY ASP ALA SER SEQRES 12 F 155 HIS LEU VAL PRO LYS GLU ILE TYR PRO LEU ILE SER HET COD A3000 44 HET COD B3000 44 HET COD C3000 44 HET COD D3000 44 HET COD E3000 44 HET COD F3000 44 HETNAM COD DEPHOSPHO COENZYME A FORMUL 7 COD 6(C21 H35 N7 O13 P2 S) FORMUL 13 HOH *619(H2 O) HELIX 1 AA1 THR A 15 PHE A 29 1 15 HELIX 2 AA2 SER A 39 ASN A 43 5 5 HELIX 3 AA3 SER A 47 THR A 59 1 13 HELIX 4 AA4 LEU A 73 TYR A 81 1 9 HELIX 5 AA5 ASP A 95 ASN A 110 1 16 HELIX 6 AA6 THR A 121 ALA A 125 5 5 HELIX 7 AA7 SER A 128 HIS A 138 1 11 HELIX 8 AA8 PRO A 147 TYR A 151 5 5 HELIX 9 AA9 THR B 15 GLU B 27 1 13 HELIX 10 AB1 SER B 39 ASN B 43 5 5 HELIX 11 AB2 SER B 47 LYS B 60 1 14 HELIX 12 AB3 LEU B 73 TYR B 81 1 9 HELIX 13 AB4 ASP B 95 ASN B 110 1 16 HELIX 14 AB5 THR B 121 ALA B 125 5 5 HELIX 15 AB6 SER B 128 HIS B 138 1 11 HELIX 16 AB7 PRO B 147 GLU B 149 5 3 HELIX 17 AB8 ILE B 150 SER B 155 1 6 HELIX 18 AB9 THR C 15 PHE C 29 1 15 HELIX 19 AC1 SER C 47 THR C 59 1 13 HELIX 20 AC2 LEU C 73 TYR C 81 1 9 HELIX 21 AC3 ASP C 95 ASN C 110 1 16 HELIX 22 AC4 THR C 121 ALA C 125 5 5 HELIX 23 AC5 SER C 128 HIS C 138 1 11 HELIX 24 AC6 PRO C 147 GLU C 149 5 3 HELIX 25 AC7 ILE C 150 SER C 155 1 6 HELIX 26 AC8 THR D 15 SER D 26 1 12 HELIX 27 AC9 SER D 47 THR D 59 1 13 HELIX 28 AD1 LEU D 73 TYR D 81 1 9 HELIX 29 AD2 ASP D 95 ASN D 110 1 16 HELIX 30 AD3 THR D 121 ALA D 125 5 5 HELIX 31 AD4 SER D 128 HIS D 138 1 11 HELIX 32 AD5 PRO D 147 GLU D 149 5 3 HELIX 33 AD6 ILE D 150 SER D 155 1 6 HELIX 34 AD7 THR E 15 SER E 26 1 12 HELIX 35 AD8 SER E 47 THR E 59 1 13 HELIX 36 AD9 LEU E 73 TYR E 81 1 9 HELIX 37 AE1 ASP E 95 ASN E 110 1 16 HELIX 38 AE2 THR E 121 ALA E 125 5 5 HELIX 39 AE3 SER E 128 HIS E 138 1 11 HELIX 40 AE4 PRO E 147 GLU E 149 5 3 HELIX 41 AE5 ILE E 150 SER E 155 1 6 HELIX 42 AE6 THR F 15 GLU F 27 1 13 HELIX 43 AE7 SER F 47 LYS F 60 1 14 HELIX 44 AE8 LEU F 73 TYR F 81 1 9 HELIX 45 AE9 ASP F 95 ASN F 110 1 16 HELIX 46 AF1 THR F 121 ALA F 125 5 5 HELIX 47 AF2 SER F 128 HIS F 138 1 11 HELIX 48 AF3 PRO F 147 ILE F 154 5 8 SHEET 1 AA110 VAL A 65 PHE A 70 0 SHEET 2 AA110 LYS A 31 ALA A 37 1 N VAL A 36 O VAL A 68 SHEET 3 AA110 ILE A 4 GLY A 9 1 N TYR A 7 O ILE A 33 SHEET 4 AA110 VAL A 85 GLY A 89 1 O VAL A 87 N ILE A 6 SHEET 5 AA110 GLU A 114 PHE A 118 1 O LEU A 116 N LEU A 86 SHEET 6 AA110 GLU B 114 PHE B 118 -1 O TYR B 117 N TYR A 117 SHEET 7 AA110 VAL B 85 GLY B 89 1 N LEU B 86 O LEU B 116 SHEET 8 AA110 ILE B 4 GLY B 9 1 N ILE B 6 O VAL B 87 SHEET 9 AA110 LYS B 31 ALA B 37 1 O ILE B 33 N TYR B 7 SHEET 10 AA110 VAL B 65 PHE B 70 1 O VAL B 68 N VAL B 36 SHEET 1 AA2 5 VAL C 65 PHE C 70 0 SHEET 2 AA2 5 LYS C 31 ALA C 37 1 N VAL C 36 O VAL C 68 SHEET 3 AA2 5 ILE C 4 GLY C 9 1 N GLY C 5 O ILE C 33 SHEET 4 AA2 5 VAL C 85 GLY C 89 1 O VAL C 87 N ILE C 6 SHEET 5 AA2 5 GLU C 114 PHE C 118 1 O GLU C 114 N LEU C 86 SHEET 1 AA3 5 VAL D 65 PHE D 70 0 SHEET 2 AA3 5 LYS D 31 ALA D 37 1 N VAL D 36 O VAL D 68 SHEET 3 AA3 5 ILE D 4 GLY D 9 1 N TYR D 7 O ILE D 33 SHEET 4 AA3 5 VAL D 85 GLY D 89 1 O VAL D 87 N ILE D 6 SHEET 5 AA3 5 GLU D 114 PHE D 118 1 O GLU D 114 N LEU D 86 SHEET 1 AA4 5 VAL E 65 PHE E 70 0 SHEET 2 AA4 5 LYS E 31 ALA E 37 1 N VAL E 36 O VAL E 68 SHEET 3 AA4 5 ILE E 4 GLY E 9 1 N TYR E 7 O ILE E 33 SHEET 4 AA4 5 VAL E 85 GLY E 89 1 O VAL E 87 N ILE E 6 SHEET 5 AA4 5 GLU E 114 PHE E 118 1 O LEU E 116 N LEU E 86 SHEET 1 AA5 5 VAL F 65 PHE F 70 0 SHEET 2 AA5 5 LYS F 31 ALA F 37 1 N VAL F 36 O VAL F 68 SHEET 3 AA5 5 ILE F 4 GLY F 9 1 N TYR F 7 O ILE F 33 SHEET 4 AA5 5 VAL F 85 GLY F 89 1 O VAL F 87 N ILE F 6 SHEET 5 AA5 5 GLU F 114 PHE F 118 1 O GLU F 114 N LEU F 86 CISPEP 1 ASP A 12 PRO A 13 0 -1.78 CISPEP 2 ASP B 12 PRO B 13 0 -3.04 CISPEP 3 ASP C 12 PRO C 13 0 -1.66 CISPEP 4 ASP D 12 PRO D 13 0 -1.78 CISPEP 5 ASP E 12 PRO E 13 0 -7.46 CISPEP 6 ASP F 12 PRO F 13 0 -2.65 CRYST1 95.893 126.898 89.980 90.00 90.00 90.00 P 21 21 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010428 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007880 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011114 0.00000