HEADER OXIDOREDUCTASE 16-JAN-24 8XWK TITLE CRYSTAL STRUCTURE OF L-2-KETO-3-DEOXYFUCONATE 4-DEHYDROGENASE FROM TITLE 2 HERBASPILLUM HUTTIENSE (APO FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDR FAMILY OXIDOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERBASPIRILLUM HUTTIENSE; SOURCE 3 ORGANISM_TAXID: 863372; SOURCE 4 GENE: E2K99_19890; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS DEHYDROGENASE, ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.AKAGASHI,S.WATANABE REVDAT 1 10-JUL-24 8XWK 0 JRNL AUTH M.AKAGASHI,S.WATANABE,S.KWIATKOWSKI,J.DROZAK,S.TERAWAKI, JRNL AUTH 2 Y.WATANABE JRNL TITL CRYSTAL STRUCTURE OF L-2-KETO-3-DEOXYFUCONATE JRNL TITL 2 4-DEHYDROGENASE REVEALS A UNIQUE BINDING MODE AS A JRNL TITL 3 ALPHA-FURANOSYL HEMIKETAL OF SUBSTRATES. JRNL REF SCI REP V. 14 14602 2024 JRNL REFN ESSN 2045-2322 JRNL PMID 38918500 JRNL DOI 10.1038/S41598-024-65627-8 REMARK 2 REMARK 2 RESOLUTION. 1.27 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.27 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 239295 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 12129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0000 - 3.9500 1.00 8019 454 0.1499 0.1624 REMARK 3 2 3.9500 - 3.1300 1.00 7781 389 0.1533 0.1793 REMARK 3 3 3.1300 - 2.7400 1.00 7763 369 0.1660 0.1892 REMARK 3 4 2.7400 - 2.4900 1.00 7643 440 0.1669 0.2061 REMARK 3 5 2.4900 - 2.3100 1.00 7655 386 0.1705 0.1935 REMARK 3 6 2.3100 - 2.1700 1.00 7640 409 0.1676 0.1921 REMARK 3 7 2.1700 - 2.0600 1.00 7628 421 0.1721 0.1912 REMARK 3 8 2.0600 - 1.9700 1.00 7560 424 0.1779 0.1887 REMARK 3 9 1.9700 - 1.9000 1.00 7563 416 0.1826 0.2064 REMARK 3 10 1.9000 - 1.8300 1.00 7623 385 0.1851 0.2224 REMARK 3 11 1.8300 - 1.7700 1.00 7575 415 0.1906 0.2153 REMARK 3 12 1.7700 - 1.7200 1.00 7574 381 0.1900 0.2111 REMARK 3 13 1.7200 - 1.6800 1.00 7552 397 0.1856 0.2205 REMARK 3 14 1.6800 - 1.6400 1.00 7580 409 0.1846 0.2086 REMARK 3 15 1.6400 - 1.6000 1.00 7500 413 0.1859 0.1990 REMARK 3 16 1.6000 - 1.5700 1.00 7565 387 0.1872 0.2119 REMARK 3 17 1.5700 - 1.5300 1.00 7528 407 0.1852 0.2085 REMARK 3 18 1.5300 - 1.5100 1.00 7564 404 0.1963 0.2148 REMARK 3 19 1.5100 - 1.4800 1.00 7513 391 0.2027 0.2206 REMARK 3 20 1.4800 - 1.4500 1.00 7539 383 0.2060 0.2133 REMARK 3 21 1.4500 - 1.4300 1.00 7504 422 0.2157 0.2293 REMARK 3 22 1.4300 - 1.4100 1.00 7524 423 0.2301 0.2531 REMARK 3 23 1.4100 - 1.3900 1.00 7460 395 0.2379 0.2640 REMARK 3 24 1.3900 - 1.3700 0.99 7498 385 0.2440 0.2569 REMARK 3 25 1.3700 - 1.3500 0.99 7540 408 0.2486 0.2723 REMARK 3 26 1.3500 - 1.3300 0.99 7477 364 0.2523 0.2495 REMARK 3 27 1.3300 - 1.3200 0.99 7486 398 0.2579 0.2687 REMARK 3 28 1.3200 - 1.3000 0.99 7448 411 0.2659 0.2869 REMARK 3 29 1.3000 - 1.2800 0.99 7354 455 0.2688 0.2943 REMARK 3 30 1.2800 - 1.2700 0.99 7510 388 0.2726 0.2942 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 7501 REMARK 3 ANGLE : 0.836 10206 REMARK 3 CHIRALITY : 0.079 1223 REMARK 3 PLANARITY : 0.007 1339 REMARK 3 DIHEDRAL : 7.051 1119 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XWK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300043525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 239340 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.270 REMARK 200 RESOLUTION RANGE LOW (A) : 48.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 19.45 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.27 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M TRIS-HCL PH8.5, 25% PEG4000, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.38050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.55550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 56.18200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.55550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.38050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 56.18200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 5 REMARK 465 GLY A 201 REMARK 465 ALA B 51 REMARK 465 SER B 52 REMARK 465 ALA C 51 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 SER A 52 OG REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 PRO A 187 CG CD REMARK 470 SER A 188 OG REMARK 470 GLN A 191 CG CD OE1 NE2 REMARK 470 SER A 194 OG REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 THR A 200 OG1 CG2 REMARK 470 LYS A 202 CG CD CE NZ REMARK 470 SER A 203 OG REMARK 470 GLU A 206 CG CD OE1 OE2 REMARK 470 VAL A 207 CG1 CG2 REMARK 470 ARG A 214 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 44 CG CD CE NZ REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 ILE B 53 CG1 CG2 CD1 REMARK 470 LYS B 75 CG CD CE NZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 LYS C 44 CG CD CE NZ REMARK 470 THR C 45 OG1 CG2 REMARK 470 GLU C 48 CG CD OE1 OE2 REMARK 470 LYS C 100 CG CD CE NZ REMARK 470 GLN C 191 CG CD OE1 NE2 REMARK 470 LYS C 198 CG CD CE NZ REMARK 470 GLU C 199 CG CD OE1 OE2 REMARK 470 ARG C 214 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 48 CG CD OE1 OE2 REMARK 470 SER D 52 OG REMARK 470 LYS D 100 CG CD CE NZ REMARK 470 GLN D 191 CG CD OE1 NE2 REMARK 470 ARG D 192 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 198 CG CD CE NZ REMARK 470 LYS D 202 CG CD CE NZ REMARK 470 ARG D 214 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 57 CD GLU C 57 OE1 -0.071 REMARK 500 GLU D 33 CD GLU D 33 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 136 -125.40 -96.07 REMARK 500 SER A 140 -138.30 -171.16 REMARK 500 GLU A 199 41.47 -98.63 REMARK 500 ASP A 249 13.85 -141.01 REMARK 500 ALA B 110 -55.41 -120.27 REMARK 500 ALA B 136 -123.27 -95.90 REMARK 500 SER B 140 -133.84 -168.71 REMARK 500 ASP B 249 15.96 -143.12 REMARK 500 ALA C 136 -125.17 -96.80 REMARK 500 SER C 140 -135.32 -169.65 REMARK 500 ASN C 147 30.09 70.03 REMARK 500 ASP C 249 15.17 -142.56 REMARK 500 ALA D 136 -124.17 -94.58 REMARK 500 SER D 140 -136.29 -172.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D 666 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH D 667 DISTANCE = 6.18 ANGSTROMS DBREF1 8XWK A 5 254 UNP A0A4P7ABK7_9BURK DBREF2 8XWK A A0A4P7ABK7 5 254 DBREF1 8XWK B 5 254 UNP A0A4P7ABK7_9BURK DBREF2 8XWK B A0A4P7ABK7 5 254 DBREF1 8XWK C 5 254 UNP A0A4P7ABK7_9BURK DBREF2 8XWK C A0A4P7ABK7 5 254 DBREF1 8XWK D 5 254 UNP A0A4P7ABK7_9BURK DBREF2 8XWK D A0A4P7ABK7 5 254 SEQRES 1 A 250 THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR ALA SEQRES 2 A 250 ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU PHE SEQRES 3 A 250 ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SER SEQRES 4 A 250 LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY VAL SEQRES 5 A 250 GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA ILE SEQRES 6 A 250 LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL LEU SEQRES 7 A 250 PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE LEU SEQRES 8 A 250 GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN LEU SEQRES 9 A 250 ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL LEU SEQRES 10 A 250 PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL ASN SEQRES 11 A 250 ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA ASN SEQRES 12 A 250 ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL GLY SEQRES 13 A 250 LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN GLY SEQRES 14 A 250 ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SER SEQRES 15 A 250 PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS GLU SEQRES 16 A 250 THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE VAL SEQRES 17 A 250 ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU GLU SEQRES 18 A 250 VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SER SEQRES 19 A 250 ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY GLY SEQRES 20 A 250 TRP SER ASN SEQRES 1 B 250 THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR ALA SEQRES 2 B 250 ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU PHE SEQRES 3 B 250 ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SER SEQRES 4 B 250 LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY VAL SEQRES 5 B 250 GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA ILE SEQRES 6 B 250 LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL LEU SEQRES 7 B 250 PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE LEU SEQRES 8 B 250 GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN LEU SEQRES 9 B 250 ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL LEU SEQRES 10 B 250 PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL ASN SEQRES 11 B 250 ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA ASN SEQRES 12 B 250 ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL GLY SEQRES 13 B 250 LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN GLY SEQRES 14 B 250 ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SER SEQRES 15 B 250 PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS GLU SEQRES 16 B 250 THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE VAL SEQRES 17 B 250 ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU GLU SEQRES 18 B 250 VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SER SEQRES 19 B 250 ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY GLY SEQRES 20 B 250 TRP SER ASN SEQRES 1 C 250 THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR ALA SEQRES 2 C 250 ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU PHE SEQRES 3 C 250 ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SER SEQRES 4 C 250 LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY VAL SEQRES 5 C 250 GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA ILE SEQRES 6 C 250 LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL LEU SEQRES 7 C 250 PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE LEU SEQRES 8 C 250 GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN LEU SEQRES 9 C 250 ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL LEU SEQRES 10 C 250 PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL ASN SEQRES 11 C 250 ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA ASN SEQRES 12 C 250 ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL GLY SEQRES 13 C 250 LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN GLY SEQRES 14 C 250 ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SER SEQRES 15 C 250 PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS GLU SEQRES 16 C 250 THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE VAL SEQRES 17 C 250 ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU GLU SEQRES 18 C 250 VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SER SEQRES 19 C 250 ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY GLY SEQRES 20 C 250 TRP SER ASN SEQRES 1 D 250 THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR ALA SEQRES 2 D 250 ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU PHE SEQRES 3 D 250 ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SER SEQRES 4 D 250 LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY VAL SEQRES 5 D 250 GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA ILE SEQRES 6 D 250 LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL LEU SEQRES 7 D 250 PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE LEU SEQRES 8 D 250 GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN LEU SEQRES 9 D 250 ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL LEU SEQRES 10 D 250 PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL ASN SEQRES 11 D 250 ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA ASN SEQRES 12 D 250 ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL GLY SEQRES 13 D 250 LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN GLY SEQRES 14 D 250 ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SER SEQRES 15 D 250 PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS GLU SEQRES 16 D 250 THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE VAL SEQRES 17 D 250 ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU GLU SEQRES 18 D 250 VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SER SEQRES 19 D 250 ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY GLY SEQRES 20 D 250 TRP SER ASN HET PEG D 301 7 HET PEG D 302 7 HET PEG D 303 7 HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 5 PEG 3(C4 H10 O3) FORMUL 8 HOH *1077(H2 O) HELIX 1 AA1 GLN A 20 GLU A 33 1 14 HELIX 2 AA2 SER A 43 GLU A 49 1 7 HELIX 3 AA3 ASP A 65 GLY A 77 1 13 HELIX 4 AA4 ASP A 98 ALA A 110 1 13 HELIX 5 AA5 ALA A 110 LYS A 128 1 19 HELIX 6 AA6 ARG A 148 VAL A 170 1 23 HELIX 7 AA7 SER A 186 GLU A 199 1 14 HELIX 8 AA8 SER A 203 ARG A 214 1 12 HELIX 9 AA9 LYS A 222 SER A 235 1 14 HELIX 10 AB1 ASP A 236 ASN A 239 5 4 HELIX 11 AB2 GLN B 20 GLU B 33 1 14 HELIX 12 AB3 SER B 43 LEU B 50 1 8 HELIX 13 AB4 ASP B 65 GLY B 77 1 13 HELIX 14 AB5 ASP B 98 ALA B 110 1 13 HELIX 15 AB6 ALA B 110 LYS B 127 1 18 HELIX 16 AB7 ARG B 148 VAL B 170 1 23 HELIX 17 AB8 SER B 186 GLY B 201 1 16 HELIX 18 AB9 SER B 203 ARG B 214 1 12 HELIX 19 AC1 LYS B 222 SER B 235 1 14 HELIX 20 AC2 ASP B 236 ASN B 239 5 4 HELIX 21 AC3 GLN C 20 GLU C 33 1 14 HELIX 22 AC4 SER C 43 GLU C 49 1 7 HELIX 23 AC5 ASP C 65 GLY C 77 1 13 HELIX 24 AC6 ASP C 98 ALA C 110 1 13 HELIX 25 AC7 ALA C 110 LYS C 128 1 19 HELIX 26 AC8 ARG C 148 VAL C 170 1 23 HELIX 27 AC9 SER C 186 GLY C 201 1 16 HELIX 28 AD1 SER C 203 ARG C 214 1 12 HELIX 29 AD2 LYS C 222 SER C 235 1 14 HELIX 30 AD3 ASP C 236 ASN C 239 5 4 HELIX 31 AD4 GLN D 20 GLU D 33 1 14 HELIX 32 AD5 SER D 43 GLU D 49 1 7 HELIX 33 AD6 ASP D 65 GLY D 77 1 13 HELIX 34 AD7 ASP D 98 ALA D 110 1 13 HELIX 35 AD8 ALA D 110 LYS D 127 1 18 HELIX 36 AD9 ARG D 148 VAL D 170 1 23 HELIX 37 AE1 SER D 186 GLY D 201 1 16 HELIX 38 AE2 SER D 203 ARG D 214 1 12 HELIX 39 AE3 LYS D 222 SER D 235 1 14 HELIX 40 AE4 ASP D 236 ASN D 239 5 4 SHEET 1 AA1 7 VAL A 56 LEU A 60 0 SHEET 2 AA1 7 ARG A 36 ASP A 41 1 N VAL A 37 O GLU A 57 SHEET 3 AA1 7 THR A 12 ILE A 15 1 N VAL A 13 O ILE A 38 SHEET 4 AA1 7 VAL A 81 ASN A 84 1 O PHE A 83 N LEU A 14 SHEET 5 AA1 7 GLY A 130 ILE A 135 1 O VAL A 133 N LEU A 82 SHEET 6 AA1 7 ILE A 174 PRO A 181 1 O ILE A 179 N ASN A 134 SHEET 7 AA1 7 ILE A 245 ILE A 248 1 O HIS A 246 N CYS A 180 SHEET 1 AA2 7 VAL B 56 LEU B 60 0 SHEET 2 AA2 7 ARG B 36 ASP B 41 1 N VAL B 37 O GLU B 57 SHEET 3 AA2 7 THR B 12 ILE B 15 1 N VAL B 13 O ILE B 38 SHEET 4 AA2 7 VAL B 81 ASN B 84 1 O PHE B 83 N LEU B 14 SHEET 5 AA2 7 GLY B 130 ILE B 135 1 O VAL B 133 N LEU B 82 SHEET 6 AA2 7 ILE B 174 PRO B 181 1 O ILE B 179 N ASN B 134 SHEET 7 AA2 7 ILE B 245 ILE B 248 1 O HIS B 246 N CYS B 180 SHEET 1 AA3 7 VAL C 56 LEU C 60 0 SHEET 2 AA3 7 ARG C 36 ASP C 41 1 N VAL C 37 O GLU C 57 SHEET 3 AA3 7 THR C 12 ILE C 15 1 N VAL C 13 O ILE C 38 SHEET 4 AA3 7 VAL C 81 ASN C 84 1 O PHE C 83 N LEU C 14 SHEET 5 AA3 7 GLY C 130 ILE C 135 1 O VAL C 133 N LEU C 82 SHEET 6 AA3 7 ILE C 174 PRO C 181 1 O ILE C 179 N ASN C 134 SHEET 7 AA3 7 ILE C 245 ILE C 248 1 O HIS C 246 N CYS C 180 SHEET 1 AA4 7 VAL D 56 LEU D 60 0 SHEET 2 AA4 7 ARG D 36 ASP D 41 1 N VAL D 37 O GLU D 57 SHEET 3 AA4 7 THR D 12 ILE D 15 1 N VAL D 13 O ILE D 38 SHEET 4 AA4 7 VAL D 81 ASN D 84 1 O PHE D 83 N LEU D 14 SHEET 5 AA4 7 GLY D 130 ILE D 135 1 O VAL D 133 N LEU D 82 SHEET 6 AA4 7 ILE D 174 PRO D 181 1 O ILE D 179 N ASN D 134 SHEET 7 AA4 7 ILE D 245 ILE D 248 1 O HIS D 246 N CYS D 180 CRYST1 62.761 112.364 129.111 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015933 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007745 0.00000