HEADER HYDROLASE 21-JAN-24 8XZC TITLE CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC BETA-ALANYL LYSINE DIPEPTIDASE TITLE 2 (PM20D2) TYR314PHE MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: XAA-ARG DIPEPTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BETA-ALA-LYS DIPEPTIDASE; COMPND 5 EC: 3.4.13.4; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: HUMAN CYTOSOLIC BETA-ALANYL LYSINE DIPEPTIDASE COMPND 9 (PM20D2) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PM20D2, ACY1L2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PM20D2, CARNOSINE, PROOFREADING, CYTOSOLIC, METABOLITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.CHANDRAVANSHI,A.KUMAR,R.D.MAKDE REVDAT 1 22-JAN-25 8XZC 0 JRNL AUTH K.CHANDRAVANSHI,A.KUMAR,R.D.MAKDE JRNL TITL CRYSTAL STRUCTURE OF HUMAN CYTOSOLIC BETA-ALANYL LYSINE JRNL TITL 2 DIPEPTIDASE (PM20D2) TYR314PHE MUTANT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24315 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.870 REMARK 3 FREE R VALUE TEST SET COUNT : 1185 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8200 - 4.7000 0.99 2994 170 0.1730 0.2095 REMARK 3 2 4.7000 - 3.7300 1.00 2933 156 0.1605 0.2079 REMARK 3 3 3.7300 - 3.2600 1.00 2903 131 0.2059 0.2618 REMARK 3 4 3.2600 - 2.9600 1.00 2849 173 0.2208 0.2392 REMARK 3 5 2.9600 - 2.7500 1.00 2863 145 0.2343 0.3061 REMARK 3 6 2.7500 - 2.5900 1.00 2858 158 0.2543 0.3420 REMARK 3 7 2.5900 - 2.4600 1.00 2888 119 0.2485 0.2917 REMARK 3 8 2.4600 - 2.3500 1.00 2842 133 0.2650 0.3274 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.287 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.623 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3120 REMARK 3 ANGLE : 0.530 4264 REMARK 3 CHIRALITY : 0.040 465 REMARK 3 PLANARITY : 0.004 561 REMARK 3 DIHEDRAL : 4.477 434 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 7.6741 21.8271 30.0243 REMARK 3 T TENSOR REMARK 3 T11: 0.2917 T22: 0.3910 REMARK 3 T33: 0.3887 T12: 0.0064 REMARK 3 T13: -0.0198 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.6038 L22: 1.6869 REMARK 3 L33: 3.1551 L12: 0.5417 REMARK 3 L13: 0.3308 L23: 1.7430 REMARK 3 S TENSOR REMARK 3 S11: 0.0876 S12: -0.2526 S13: 0.1103 REMARK 3 S21: 0.1043 S22: -0.0283 S23: 0.0933 REMARK 3 S31: 0.0660 S32: -0.1033 S33: -0.0600 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XZC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300043832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : RRCAT INDUS-2 REMARK 200 BEAMLINE : PX-BL21 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24352 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 45.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 1.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 70 MM CALCIUM CHLORIDE, 35 MM SODIUM REMARK 280 ACETATE PH4.6, 7% ISOPROPANOL, 15% GLYCEROL, 20 MM TRIS-CL, AND REMARK 280 200 MM NACL (MIXED IN 1:1), MICROBATCH, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.96750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.76300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.21700 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.96750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.76300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.21700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.96750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.76300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.21700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.96750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.76300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.21700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 657 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 ALA A -16 REMARK 465 SER A -15 REMARK 465 TRP A -14 REMARK 465 SER A -13 REMARK 465 HIS A -12 REMARK 465 PRO A -11 REMARK 465 GLN A -10 REMARK 465 PHE A -9 REMARK 465 GLU A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 SER A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLY A 7 REMARK 465 GLY A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLU A 12 REMARK 465 ASN A 13 REMARK 465 SER A 100 REMARK 465 ALA A 101 REMARK 465 THR A 102 REMARK 465 SER A 215 REMARK 465 HIS A 216 REMARK 465 SER A 217 REMARK 465 ALA A 218 REMARK 465 SER A 219 REMARK 465 SER A 340 REMARK 465 GLU A 341 REMARK 465 ASP A 342 REMARK 465 THR A 343 REMARK 465 MET A 344 REMARK 465 LEU A 345 REMARK 465 ASN A 346 REMARK 465 GLY A 347 REMARK 465 PHE A 431 REMARK 465 VAL A 432 REMARK 465 ASN A 433 REMARK 465 ALA A 434 REMARK 465 VAL A 435 REMARK 465 GLU A 436 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 14 CD1 CD2 REMARK 470 GLN A 17 CG CD OE1 NE2 REMARK 470 SER A 19 OG REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 LEU A 22 CD1 CD2 REMARK 470 ARG A 26 NE CZ NH1 NH2 REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 ARG A 97 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 147 CD1 CD2 REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 193 CG CD OE1 OE2 REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 TYR A 220 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ILE A 264 CG1 CG2 CD1 REMARK 470 ILE A 265 CD1 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 LYS A 308 CE NZ REMARK 470 LYS A 321 CG CD CE NZ REMARK 470 TRP A 324 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 324 CZ3 CH2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLU A 337 CG CD OE1 OE2 REMARK 470 ILE A 339 CD1 REMARK 470 SER A 349 OG REMARK 470 GLU A 413 OE1 OE2 REMARK 470 GLU A 416 CG CD OE1 OE2 REMARK 470 GLU A 420 CG CD OE1 OE2 REMARK 470 LYS A 423 CG CD CE NZ REMARK 470 LEU A 424 CG CD1 CD2 REMARK 470 LYS A 425 CD CE NZ REMARK 470 GLN A 427 CD OE1 NE2 REMARK 470 GLN A 430 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 82 -55.36 66.15 REMARK 500 GLU A 95 147.50 -171.23 REMARK 500 ARG A 97 -52.88 65.07 REMARK 500 ALA A 98 91.57 72.72 REMARK 500 TYR A 114 19.39 -159.81 REMARK 500 ALA A 116 -168.18 -101.77 REMARK 500 SER A 191 -135.27 -139.85 REMARK 500 SER A 191 -134.54 -139.52 REMARK 500 GLU A 429 31.11 -92.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 124 SG REMARK 620 2 GLU A 165 OE2 111.4 REMARK 620 3 HIS A 377 NE2 88.5 95.5 REMARK 620 4 HOH A 626 O 105.3 112.9 139.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 504 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 124 SG REMARK 620 2 HIS A 126 NE2 94.1 REMARK 620 3 HIS A 189 NE2 88.6 114.2 REMARK 620 4 HOH A 617 O 163.2 80.8 79.1 REMARK 620 5 HOH A 626 O 112.1 125.0 113.9 83.6 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7YH4 RELATED DB: PDB DBREF 8XZC A 20 436 UNP Q8IYS1 P20D2_HUMAN 20 436 SEQADV 8XZC MET A -17 UNP Q8IYS1 INITIATING METHIONINE SEQADV 8XZC ALA A -16 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A -15 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC TRP A -14 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A -13 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC HIS A -12 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC PRO A -11 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLN A -10 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC PHE A -9 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLU A -8 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A -7 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A -6 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A -5 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A -4 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC HIS A -3 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC HIS A -2 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC HIS A -1 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC HIS A 0 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC HIS A 1 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC HIS A 2 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A 3 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A 4 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A 5 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A 6 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A 7 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A 8 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A 9 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A 10 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A 11 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLU A 12 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC ASN A 13 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC LEU A 14 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC TYR A 15 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC PHE A 16 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLN A 17 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC GLY A 18 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC SER A 19 UNP Q8IYS1 EXPRESSION TAG SEQADV 8XZC PHE A 314 UNP Q8IYS1 TYR 314 ENGINEERED MUTATION SEQRES 1 A 454 MET ALA SER TRP SER HIS PRO GLN PHE GLU GLY GLY SER SEQRES 2 A 454 SER HIS HIS HIS HIS HIS HIS SER SER GLY SER GLY GLY SEQRES 3 A 454 GLY GLY GLY GLU ASN LEU TYR PHE GLN GLY SER LEU GLU SEQRES 4 A 454 LEU LEU LYS LEU ARG SER ALA GLU CYS ILE ASP GLU ALA SEQRES 5 A 454 ALA GLU ARG LEU GLY ALA LEU SER ARG ALA ILE TRP SER SEQRES 6 A 454 GLN PRO GLU LEU ALA TYR GLU GLU HIS HIS ALA HIS ARG SEQRES 7 A 454 VAL LEU THR HIS PHE PHE GLU ARG GLU PRO PRO ALA ALA SEQRES 8 A 454 SER TRP ALA VAL GLN PRO HIS TYR GLN LEU PRO THR ALA SEQRES 9 A 454 PHE ARG ALA GLU TRP GLU PRO PRO GLU ALA ARG ALA PRO SEQRES 10 A 454 SER ALA THR PRO ARG PRO LEU HIS LEU GLY PHE LEU CYS SEQRES 11 A 454 GLU TYR ASP ALA LEU PRO GLY ILE GLY HIS ALA CYS GLY SEQRES 12 A 454 HIS ASN LEU ILE ALA GLU VAL GLY ALA ALA ALA ALA LEU SEQRES 13 A 454 GLY VAL ARG GLY ALA LEU GLU GLY LEU PRO ARG PRO PRO SEQRES 14 A 454 PRO PRO VAL LYS VAL VAL VAL LEU GLY THR PRO ALA GLU SEQRES 15 A 454 GLU ASP GLY GLY GLY LYS ILE ASP LEU ILE GLU ALA GLY SEQRES 16 A 454 ALA PHE THR ASN LEU ASP VAL VAL PHE MET ALA HIS PRO SEQRES 17 A 454 SER GLN GLU ASN ALA ALA TYR LEU PRO ASP MET ALA GLU SEQRES 18 A 454 HIS ASP VAL THR VAL LYS TYR TYR GLY LYS ALA SER HIS SEQRES 19 A 454 SER ALA SER TYR PRO TRP GLU GLY LEU ASN ALA LEU ASP SEQRES 20 A 454 ALA ALA VAL LEU ALA TYR ASN ASN LEU SER VAL PHE ARG SEQRES 21 A 454 GLN GLN MET LYS PRO THR TRP ARG VAL HIS GLY ILE ILE SEQRES 22 A 454 LYS ASN GLY GLY VAL LYS PRO ASN ILE ILE PRO SER TYR SEQRES 23 A 454 SER GLU LEU ILE TYR TYR PHE ARG ALA PRO SER MET LYS SEQRES 24 A 454 GLU LEU GLN VAL LEU THR LYS LYS ALA GLU ASP CYS PHE SEQRES 25 A 454 ARG ALA ALA ALA LEU ALA SER GLY CYS THR VAL GLU ILE SEQRES 26 A 454 LYS GLY GLY ALA HIS ASP PHE TYR ASN VAL LEU PRO ASN SEQRES 27 A 454 LYS SER LEU TRP LYS ALA TYR MET GLU ASN GLY ARG LYS SEQRES 28 A 454 LEU GLY ILE GLU PHE ILE SER GLU ASP THR MET LEU ASN SEQRES 29 A 454 GLY PRO SER GLY SER THR ASP PHE GLY ASN VAL SER PHE SEQRES 30 A 454 VAL VAL PRO GLY ILE HIS PRO TYR PHE HIS ILE GLY SER SEQRES 31 A 454 ASN ALA LEU ASN HIS THR GLU GLN TYR THR GLU ALA ALA SEQRES 32 A 454 GLY SER GLN GLU ALA GLN PHE TYR THR LEU ARG THR ALA SEQRES 33 A 454 LYS ALA LEU ALA MET THR ALA LEU ASP VAL ILE PHE LYS SEQRES 34 A 454 PRO GLU LEU LEU GLU GLY ILE ARG GLU ASP PHE LYS LEU SEQRES 35 A 454 LYS LEU GLN GLU GLU GLN PHE VAL ASN ALA VAL GLU HET PO4 A 501 5 HET PO4 A 502 5 HET ZN A 503 1 HET ZN A 504 1 HETNAM PO4 PHOSPHATE ION HETNAM ZN ZINC ION FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *84(H2 O) HELIX 1 AA1 SER A 19 ALA A 34 1 16 HELIX 2 AA2 ALA A 34 SER A 47 1 14 HELIX 3 AA3 GLU A 55 GLU A 69 1 15 HELIX 4 AA4 GLY A 125 GLY A 146 1 22 HELIX 5 AA5 GLY A 168 ALA A 176 1 9 HELIX 6 AA6 ASN A 226 ARG A 242 1 17 HELIX 7 AA7 GLN A 243 MET A 245 5 3 HELIX 8 AA8 SER A 279 GLY A 302 1 24 HELIX 9 AA9 ASN A 320 GLY A 335 1 16 HELIX 10 AB1 ASP A 353 PHE A 359 1 7 HELIX 11 AB2 THR A 378 GLY A 386 1 9 HELIX 12 AB3 GLN A 388 LYS A 411 1 24 HELIX 13 AB4 LYS A 411 GLU A 429 1 19 SHEET 1 AA1 6 ALA A 76 PRO A 79 0 SHEET 2 AA1 6 PHE A 87 TRP A 91 -1 O ARG A 88 N GLN A 78 SHEET 3 AA1 6 VAL A 154 GLY A 160 -1 O VAL A 158 N ALA A 89 SHEET 4 AA1 6 LEU A 106 CYS A 112 1 N LEU A 108 O VAL A 157 SHEET 5 AA1 6 VAL A 184 PHE A 186 1 O VAL A 184 N GLY A 109 SHEET 6 AA1 6 GLY A 363 ILE A 364 1 O ILE A 364 N VAL A 185 SHEET 1 AA2 2 HIS A 189 SER A 191 0 SHEET 2 AA2 2 TYR A 367 HIS A 369 1 O PHE A 368 N SER A 191 SHEET 1 AA3 4 ARG A 250 ASN A 257 0 SHEET 2 AA3 4 TYR A 268 ALA A 277 -1 O ARG A 276 N ARG A 250 SHEET 3 AA3 4 ALA A 202 TYR A 211 -1 N VAL A 208 O LEU A 271 SHEET 4 AA3 4 THR A 304 GLY A 309 -1 O LYS A 308 N THR A 207 LINK SG CYS A 124 ZN ZN A 503 1555 1555 2.27 LINK SG CYS A 124 ZN ZN A 504 1555 1555 2.39 LINK NE2 HIS A 126 ZN ZN A 504 1555 1555 2.29 LINK OE2 GLU A 165 ZN ZN A 503 1555 1555 1.98 LINK NE2 HIS A 189 ZN ZN A 504 1555 1555 2.26 LINK NE2 HIS A 377 ZN ZN A 503 1555 1555 2.30 LINK ZN ZN A 503 O HOH A 626 1555 1555 2.34 LINK ZN ZN A 504 O HOH A 617 1555 1555 2.22 LINK ZN ZN A 504 O HOH A 626 1555 1555 2.03 CISPEP 1 PRO A 70 PRO A 71 0 -3.03 CRYST1 79.935 115.526 124.434 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008656 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008036 0.00000 CONECT 843 3036 3037 CONECT 857 3037 CONECT 1118 3036 CONECT 1292 3037 CONECT 2625 3036 CONECT 3026 3027 3028 3029 3030 CONECT 3027 3026 CONECT 3028 3026 CONECT 3029 3026 CONECT 3030 3026 CONECT 3031 3032 3033 3034 3035 CONECT 3032 3031 CONECT 3033 3031 CONECT 3034 3031 CONECT 3035 3031 CONECT 3036 843 1118 2625 3063 CONECT 3037 843 857 1292 3054 CONECT 3037 3063 CONECT 3054 3037 CONECT 3063 3036 3037 MASTER 400 0 4 13 12 0 0 6 3094 1 20 35 END