data_8Y0F # _entry.id 8Y0F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8Y0F pdb_00008y0f 10.2210/pdb8y0f/pdb WWPDB D_1300043537 ? ? BMRB 36640 ? 10.13018/BMR36640 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-26 2 'Structure model' 1 1 2024-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8Y0F _pdbx_database_status.recvd_initial_deposition_date 2024-01-22 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution NMR structure of the PTK7-binding DNA aptamer sgc8c' _pdbx_database_related.db_id 36640 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email dahan@sjtu.edu.cn _pdbx_contact_author.name_first Da _pdbx_contact_author.name_last Han _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0804-2964 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'He, A.' 1 0009-0003-6147-2757 'Wan, L.' 2 0000-0003-3663-2678 'Guo, P.' 3 0000-0001-7760-5786 'Han, D.' 4 0000-0002-0804-2964 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 121 _citation.language ? _citation.page_first e2404060121 _citation.page_last e2404060121 _citation.title 'Structure-based investigation of a DNA aptamer targeting PTK7 reveals an intricate 3D fold guiding functional optimization.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2404060121 _citation.pdbx_database_id_PubMed 38985770 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'He, A.' 1 0009-0003-6147-2757 primary 'Wan, L.' 2 0000-0003-3663-2678 primary 'Zhang, Y.' 3 ? primary 'Yan, Z.' 4 0009-0006-1206-5495 primary 'Guo, P.' 5 0000-0001-7760-5786 primary 'Han, D.' 6 0000-0002-0804-2964 primary 'Tan, W.' 7 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description DNA _entity.formula_weight 12651.133 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(DA)(DT)(DC)(DT)(DA)(DA)(DC)(DT)(DG)(DC)(DT)(DG)(DC)(DG)(DC)(DC)(DG)(DC)(DC)(DG) (DG)(DG)(DA)(DA)(DA)(DA)(DT)(DA)(DC)(DT)(DG)(DT)(DA)(DC)(DG)(DG)(DT)(DT)(DA)(DG) (DA) ; _entity_poly.pdbx_seq_one_letter_code_can ATCTAACTGCTGCGCCGCCGGGAAAATACTGTACGGTTAGA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DT n 1 3 DC n 1 4 DT n 1 5 DA n 1 6 DA n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DC n 1 11 DT n 1 12 DG n 1 13 DC n 1 14 DG n 1 15 DC n 1 16 DC n 1 17 DG n 1 18 DC n 1 19 DC n 1 20 DG n 1 21 DG n 1 22 DG n 1 23 DA n 1 24 DA n 1 25 DA n 1 26 DA n 1 27 DT n 1 28 DA n 1 29 DC n 1 30 DT n 1 31 DG n 1 32 DT n 1 33 DA n 1 34 DC n 1 35 DG n 1 36 DG n 1 37 DT n 1 38 DT n 1 39 DA n 1 40 DG n 1 41 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 41 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DT 4 4 4 DT DT A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DG 12 12 12 DG DG A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DC 15 15 15 DC DC A . n A 1 16 DC 16 16 16 DC DC A . n A 1 17 DG 17 17 17 DG DG A . n A 1 18 DC 18 18 18 DC DC A . n A 1 19 DC 19 19 19 DC DC A . n A 1 20 DG 20 20 20 DG DG A . n A 1 21 DG 21 21 21 DG DG A . n A 1 22 DG 22 22 22 DG DG A . n A 1 23 DA 23 23 23 DA DA A . n A 1 24 DA 24 24 24 DA DA A . n A 1 25 DA 25 25 25 DA DA A . n A 1 26 DA 26 26 26 DA DA A . n A 1 27 DT 27 27 27 DT DT A . n A 1 28 DA 28 28 28 DA DA A . n A 1 29 DC 29 29 29 DC DC A . n A 1 30 DT 30 30 30 DT DT A . n A 1 31 DG 31 31 31 DG DG A . n A 1 32 DT 32 32 32 DT DT A . n A 1 33 DA 33 33 33 DA DA A . n A 1 34 DC 34 34 34 DC DC A . n A 1 35 DG 35 35 35 DG DG A . n A 1 36 DG 36 36 36 DG DG A . n A 1 37 DT 37 37 37 DT DT A . n A 1 38 DT 38 38 38 DT DT A . n A 1 39 DA 39 39 39 DA DA A . n A 1 40 DG 40 40 40 DG DG A . n A 1 41 DA 41 41 41 DA DA A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8Y0F _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8Y0F _struct.title 'Solution NMR structure of the PTK7-binding DNA aptamer sgc8c' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8Y0F _struct_keywords.text 'DNA aptamer, protein tyrosine kinase 7, three-way junction, DNA' _struct_keywords.pdbx_keywords DNA # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8Y0F _struct_ref.pdbx_db_accession 8Y0F _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8Y0F _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 41 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8Y0F _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 41 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 41 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 41 N1 ? ? A DT 2 A DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 41 N6 ? ? A DT 2 A DA 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DG 40 N1 ? ? A DC 3 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N4 ? ? ? 1_555 A DG 40 O6 ? ? A DC 3 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 A DG 40 N2 ? ? A DC 3 A DG 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 4 N3 ? ? ? 1_555 A DA 39 N1 ? ? A DT 4 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 4 O4 ? ? ? 1_555 A DA 39 N6 ? ? A DT 4 A DA 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 38 N3 ? ? A DA 5 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 38 O4 ? ? A DA 5 A DT 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 37 N3 ? ? A DA 6 A DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 37 O4 ? ? A DA 6 A DT 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DG 14 N2 ? ? A DT 8 A DG 14 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? hydrog13 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 9 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 9 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 9 A DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 12 N1 ? ? A DC 10 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 12 O6 ? ? A DC 10 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 12 N2 ? ? A DC 10 A DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 18 N3 ? ? ? 1_555 A DG 36 N1 ? ? A DC 18 A DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 18 N4 ? ? ? 1_555 A DG 36 O6 ? ? A DC 18 A DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 18 O2 ? ? ? 1_555 A DG 36 N2 ? ? A DC 18 A DG 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 19 N3 ? ? ? 1_555 A DG 35 N1 ? ? A DC 19 A DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 19 N4 ? ? ? 1_555 A DG 35 O6 ? ? A DC 19 A DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 19 O2 ? ? ? 1_555 A DG 35 N2 ? ? A DC 19 A DG 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 20 N1 ? ? ? 1_555 A DC 34 N3 ? ? A DG 20 A DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 20 N2 ? ? ? 1_555 A DC 34 O2 ? ? A DG 20 A DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 20 O6 ? ? ? 1_555 A DC 34 N4 ? ? A DG 20 A DC 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 22 N1 ? ? ? 1_555 A DT 32 O4 ? ? A DG 22 A DT 32 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog29 hydrog ? ? A DG 22 O6 ? ? ? 1_555 A DT 32 N3 ? ? A DG 22 A DT 32 1_555 ? ? ? ? ? ? TYPE_27_PAIR ? ? ? hydrog30 hydrog ? ? A DA 23 N1 ? ? ? 1_555 A DG 31 N1 ? ? A DA 23 A DG 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog31 hydrog ? ? A DA 23 N6 ? ? ? 1_555 A DG 31 O6 ? ? A DA 23 A DG 31 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog32 hydrog ? ? A DA 24 N1 ? ? ? 1_555 A DT 30 N3 ? ? A DA 24 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 24 N6 ? ? ? 1_555 A DT 30 O4 ? ? A DA 24 A DT 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 25 N3 ? ? ? 1_555 A DA 28 N6 ? ? A DA 25 A DA 28 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.34 108.30 3.04 0.30 N 2 1 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.97 118.60 -3.63 0.60 N 3 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.80 108.30 4.50 0.30 N 4 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.17 108.30 4.87 0.30 N 5 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.54 108.30 2.24 0.30 N 6 1 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.64 118.90 3.74 0.60 N 7 1 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.82 121.90 -5.08 0.70 N 8 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.51 108.30 2.21 0.30 N 9 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 118.96 122.90 -3.94 0.60 N 10 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 113.21 108.30 4.91 0.30 N 11 1 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 113.84 108.30 5.54 0.30 N 12 1 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.15 108.30 1.85 0.30 N 13 1 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.76 108.30 4.46 0.30 N 14 1 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 112.20 108.30 3.90 0.30 N 15 1 "O4'" A DC 18 ? ? "C4'" A DC 18 ? ? "C3'" A DC 18 ? ? 109.86 106.00 3.86 0.60 N 16 1 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.31 108.30 2.01 0.30 N 17 1 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 112.38 108.30 4.08 0.30 N 18 1 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 114.11 108.30 5.81 0.30 N 19 1 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.49 108.30 2.19 0.30 N 20 1 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 111.21 108.30 2.91 0.30 N 21 1 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 114.28 108.30 5.98 0.30 N 22 1 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 115.08 108.30 6.78 0.30 N 23 1 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 113.05 108.30 4.75 0.30 N 24 1 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 113.62 108.30 5.32 0.30 N 25 1 N1 A DA 33 ? ? C6 A DA 33 ? ? N6 A DA 33 ? ? 114.90 118.60 -3.70 0.60 N 26 1 "O4'" A DC 34 ? ? "C1'" A DC 34 ? ? N1 A DC 34 ? ? 111.16 108.30 2.86 0.30 N 27 1 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 110.45 108.30 2.15 0.30 N 28 1 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 111.54 108.30 3.24 0.30 N 29 1 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 112.78 108.30 4.48 0.30 N 30 1 "O4'" A DG 40 ? ? "C1'" A DG 40 ? ? N9 A DG 40 ? ? 110.80 108.30 2.50 0.30 N 31 1 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.36 108.30 2.06 0.30 N 32 2 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.81 108.30 3.51 0.30 N 33 2 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.74 108.30 4.44 0.30 N 34 2 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.69 108.30 3.39 0.30 N 35 2 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.99 108.30 3.69 0.30 N 36 2 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.84 121.90 -5.06 0.70 N 37 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 112.11 108.30 3.81 0.30 N 38 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.96 108.30 4.66 0.30 N 39 2 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 114.91 108.30 6.61 0.30 N 40 2 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.86 108.30 5.56 0.30 N 41 2 "C3'" A DG 12 ? ? "O3'" A DG 12 ? ? P A DC 13 ? ? 127.67 119.70 7.97 1.20 Y 42 2 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.27 108.30 2.97 0.30 N 43 2 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 110.67 108.30 2.37 0.30 N 44 2 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 110.20 108.30 1.90 0.30 N 45 2 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 110.14 108.30 1.84 0.30 N 46 2 N3 A DC 16 ? ? C2 A DC 16 ? ? O2 A DC 16 ? ? 117.12 121.90 -4.78 0.70 N 47 2 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 113.09 108.30 4.79 0.30 N 48 2 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 112.72 108.30 4.42 0.30 N 49 2 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 112.86 108.30 4.56 0.30 N 50 2 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 110.85 108.30 2.55 0.30 N 51 2 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 112.38 108.30 4.08 0.30 N 52 2 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.65 108.30 2.35 0.30 N 53 2 "O4'" A DA 26 ? ? "C1'" A DA 26 ? ? N9 A DA 26 ? ? 111.99 108.30 3.69 0.30 N 54 2 "C1'" A DA 28 ? ? "O4'" A DA 28 ? ? "C4'" A DA 28 ? ? 103.81 110.10 -6.29 1.00 N 55 2 "O4'" A DA 28 ? ? "C1'" A DA 28 ? ? N9 A DA 28 ? ? 110.65 108.30 2.35 0.30 N 56 2 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 110.68 108.30 2.38 0.30 N 57 2 N1 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 122.88 118.90 3.98 0.60 N 58 2 N3 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 116.86 121.90 -5.04 0.70 N 59 2 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 112.13 108.30 3.83 0.30 N 60 2 C6 A DT 30 ? ? C5 A DT 30 ? ? C7 A DT 30 ? ? 119.27 122.90 -3.63 0.60 N 61 2 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 112.28 108.30 3.98 0.30 N 62 2 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 110.23 108.30 1.93 0.30 N 63 2 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 115.62 108.30 7.32 0.30 N 64 2 N3 A DC 34 ? ? C2 A DC 34 ? ? O2 A DC 34 ? ? 117.50 121.90 -4.40 0.70 N 65 2 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 114.41 108.30 6.11 0.30 N 66 2 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 114.61 108.30 6.31 0.30 N 67 2 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 115.85 108.30 7.55 0.30 N 68 2 "O4'" A DG 40 ? ? "C1'" A DG 40 ? ? N9 A DG 40 ? ? 111.00 108.30 2.70 0.30 N 69 2 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.55 108.30 2.25 0.30 N 70 3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.74 108.30 3.44 0.30 N 71 3 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.66 108.30 3.36 0.30 N 72 3 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.70 108.30 2.40 0.30 N 73 3 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.82 118.60 -4.78 0.60 N 74 3 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.69 118.60 -3.91 0.60 N 75 3 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 116.21 108.30 7.91 0.30 N 76 3 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 114.55 108.30 6.25 0.30 N 77 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.26 108.30 6.96 0.30 N 78 3 "C3'" A DC 10 ? ? "C2'" A DC 10 ? ? "C1'" A DC 10 ? ? 96.88 102.40 -5.52 0.80 N 79 3 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 115.43 108.30 7.13 0.30 N 80 3 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.40 108.30 5.10 0.30 N 81 3 "C3'" A DG 12 ? ? "O3'" A DG 12 ? ? P A DC 13 ? ? 127.16 119.70 7.46 1.20 Y 82 3 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.16 108.30 1.86 0.30 N 83 3 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 113.54 108.30 5.24 0.30 N 84 3 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 112.07 108.30 3.77 0.30 N 85 3 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 111.02 108.30 2.72 0.30 N 86 3 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 112.43 108.30 4.13 0.30 N 87 3 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 111.63 108.30 3.33 0.30 N 88 3 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 112.93 108.30 4.63 0.30 N 89 3 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 110.36 108.30 2.06 0.30 N 90 3 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 111.53 108.30 3.23 0.30 N 91 3 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 113.22 108.30 4.92 0.30 N 92 3 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 116.96 108.30 8.66 0.30 N 93 3 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 114.49 108.30 6.19 0.30 N 94 3 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 111.76 108.30 3.46 0.30 N 95 3 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 115.55 108.30 7.25 0.30 N 96 3 C5 A DA 33 ? ? C6 A DA 33 ? ? N1 A DA 33 ? ? 120.84 117.70 3.14 0.50 N 97 3 N1 A DA 33 ? ? C6 A DA 33 ? ? N6 A DA 33 ? ? 114.89 118.60 -3.71 0.60 N 98 3 "O4'" A DC 34 ? ? "C1'" A DC 34 ? ? N1 A DC 34 ? ? 110.19 108.30 1.89 0.30 N 99 3 "O4'" A DG 36 ? ? "C1'" A DG 36 ? ? N9 A DG 36 ? ? 111.03 108.30 2.73 0.30 N 100 3 "C5'" A DT 38 ? ? "C4'" A DT 38 ? ? "O4'" A DT 38 ? ? 116.67 109.80 6.87 1.10 N 101 3 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 112.72 108.30 4.42 0.30 N 102 3 "O4'" A DG 40 ? ? "C1'" A DG 40 ? ? N9 A DG 40 ? ? 110.28 108.30 1.98 0.30 N 103 3 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.61 108.30 2.31 0.30 N 104 4 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.12 108.30 2.82 0.30 N 105 4 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.88 118.60 -3.72 0.60 N 106 4 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.43 108.30 3.13 0.30 N 107 4 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.42 108.30 5.12 0.30 N 108 4 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.18 108.30 3.88 0.30 N 109 4 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.68 118.60 -3.92 0.60 N 110 4 "C3'" A DC 7 ? ? "C2'" A DC 7 ? ? "C1'" A DC 7 ? ? 96.95 102.40 -5.45 0.80 N 111 4 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 111.12 108.30 2.82 0.30 N 112 4 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.86 108.30 2.56 0.30 N 113 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.81 108.30 4.51 0.30 N 114 4 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 113.08 108.30 4.78 0.30 N 115 4 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.16 108.30 1.86 0.30 N 116 4 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 114.53 108.30 6.23 0.30 N 117 4 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 113.52 108.30 5.22 0.30 N 118 4 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 110.69 108.30 2.39 0.30 N 119 4 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 112.61 108.30 4.31 0.30 N 120 4 "O4'" A DG 17 ? ? "C1'" A DG 17 ? ? N9 A DG 17 ? ? 110.85 108.30 2.55 0.30 N 121 4 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 112.41 108.30 4.11 0.30 N 122 4 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 115.00 108.30 6.70 0.30 N 123 4 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 114.14 108.30 5.84 0.30 N 124 4 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 111.52 108.30 3.22 0.30 N 125 4 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 112.65 108.30 4.35 0.30 N 126 4 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 111.96 108.30 3.66 0.30 N 127 4 "O4'" A DA 28 ? ? "C1'" A DA 28 ? ? N9 A DA 28 ? ? 111.91 108.30 3.61 0.30 N 128 4 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 112.44 108.30 4.14 0.30 N 129 4 C6 A DT 30 ? ? C5 A DT 30 ? ? C7 A DT 30 ? ? 119.30 122.90 -3.60 0.60 N 130 4 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 113.80 108.30 5.50 0.30 N 131 4 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 111.14 108.30 2.84 0.30 N 132 4 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 111.35 108.30 3.05 0.30 N 133 4 N1 A DA 33 ? ? C6 A DA 33 ? ? N6 A DA 33 ? ? 112.98 118.60 -5.62 0.60 N 134 4 "O4'" A DG 36 ? ? "C1'" A DG 36 ? ? N9 A DG 36 ? ? 112.28 108.30 3.98 0.30 N 135 4 "C5'" A DT 38 ? ? "C4'" A DT 38 ? ? "O4'" A DT 38 ? ? 116.44 109.80 6.64 1.10 N 136 4 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 112.15 108.30 3.85 0.30 N 137 4 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 112.16 108.30 3.86 0.30 N 138 4 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.64 108.30 2.34 0.30 N 139 5 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.98 108.30 3.68 0.30 N 140 5 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 113.04 108.30 4.74 0.30 N 141 5 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 112.17 108.30 3.87 0.30 N 142 5 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 113.53 118.60 -5.07 0.60 N 143 5 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 111.29 108.30 2.99 0.30 N 144 5 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 115.02 108.30 6.72 0.30 N 145 5 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 114.48 108.30 6.18 0.30 N 146 5 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.48 108.30 3.18 0.30 N 147 5 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 111.96 108.30 3.66 0.30 N 148 5 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.86 108.30 3.56 0.30 N 149 5 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 111.74 108.30 3.44 0.30 N 150 5 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 112.36 108.30 4.06 0.30 N 151 5 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 115.33 108.30 7.03 0.30 N 152 5 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 116.53 108.30 8.23 0.30 N 153 5 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 111.48 108.30 3.18 0.30 N 154 5 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 111.66 108.30 3.36 0.30 N 155 5 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.82 108.30 2.52 0.30 N 156 5 "O4'" A DA 26 ? ? "C1'" A DA 26 ? ? N9 A DA 26 ? ? 110.36 108.30 2.06 0.30 N 157 5 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 114.44 108.30 6.14 0.30 N 158 5 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 112.45 108.30 4.15 0.30 N 159 5 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 114.10 108.30 5.80 0.30 N 160 5 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 111.94 108.30 3.64 0.30 N 161 5 "O4'" A DC 34 ? ? "C1'" A DC 34 ? ? N1 A DC 34 ? ? 111.38 108.30 3.08 0.30 N 162 5 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 110.25 108.30 1.95 0.30 N 163 5 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 110.67 108.30 2.37 0.30 N 164 5 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 112.98 108.30 4.68 0.30 N 165 5 "O4'" A DG 40 ? ? "C1'" A DG 40 ? ? N9 A DG 40 ? ? 111.12 108.30 2.82 0.30 N 166 5 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.52 108.30 2.22 0.30 N 167 6 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.78 108.30 3.48 0.30 N 168 6 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.57 108.30 4.27 0.30 N 169 6 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 112.82 108.30 4.52 0.30 N 170 6 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.73 118.60 -3.87 0.60 N 171 6 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.67 108.30 2.37 0.30 N 172 6 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 113.66 108.30 5.36 0.30 N 173 6 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.75 121.90 -5.15 0.70 N 174 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.50 108.30 4.20 0.30 N 175 6 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 111.29 108.30 2.99 0.30 N 176 6 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 112.86 108.30 4.56 0.30 N 177 6 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.57 108.30 5.27 0.30 N 178 6 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.49 108.30 4.19 0.30 N 179 6 "O4'" A DC 15 ? ? "C1'" A DC 15 ? ? N1 A DC 15 ? ? 112.07 108.30 3.77 0.30 N 180 6 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 111.88 108.30 3.58 0.30 N 181 6 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.37 108.30 3.07 0.30 N 182 6 N3 A DC 19 ? ? C2 A DC 19 ? ? O2 A DC 19 ? ? 117.70 121.90 -4.20 0.70 N 183 6 N7 A DG 20 ? ? C8 A DG 20 ? ? N9 A DG 20 ? ? 116.12 113.10 3.02 0.50 N 184 6 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 110.91 108.30 2.61 0.30 N 185 6 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 114.19 108.30 5.89 0.30 N 186 6 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 111.06 108.30 2.76 0.30 N 187 6 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.96 108.30 2.66 0.30 N 188 6 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.93 108.30 2.63 0.30 N 189 6 "O4'" A DA 26 ? ? "C1'" A DA 26 ? ? N9 A DA 26 ? ? 110.38 108.30 2.08 0.30 N 190 6 "O4'" A DA 28 ? ? "C1'" A DA 28 ? ? N9 A DA 28 ? ? 111.58 108.30 3.28 0.30 N 191 6 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 110.98 108.30 2.68 0.30 N 192 6 N1 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 122.72 118.90 3.82 0.60 N 193 6 N3 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 116.55 121.90 -5.35 0.70 N 194 6 C6 A DT 30 ? ? C5 A DT 30 ? ? C7 A DT 30 ? ? 118.37 122.90 -4.53 0.60 N 195 6 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 113.84 108.30 5.54 0.30 N 196 6 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 110.38 108.30 2.08 0.30 N 197 6 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 114.78 108.30 6.48 0.30 N 198 6 "O4'" A DC 34 ? ? "C1'" A DC 34 ? ? N1 A DC 34 ? ? 110.21 108.30 1.91 0.30 N 199 6 "C3'" A DG 35 ? ? "O3'" A DG 35 ? ? P A DG 36 ? ? 126.99 119.70 7.29 1.20 Y 200 6 "O4'" A DG 36 ? ? "C1'" A DG 36 ? ? N9 A DG 36 ? ? 110.51 108.30 2.21 0.30 N 201 6 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 110.81 108.30 2.51 0.30 N 202 6 "C5'" A DT 38 ? ? "C4'" A DT 38 ? ? "O4'" A DT 38 ? ? 116.80 109.80 7.00 1.10 N 203 6 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 113.86 108.30 5.56 0.30 N 204 6 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 113.97 108.30 5.67 0.30 N 205 6 "O4'" A DG 40 ? ? "C1'" A DG 40 ? ? N9 A DG 40 ? ? 111.15 108.30 2.85 0.30 N 206 6 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.87 108.30 2.57 0.30 N 207 7 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 112.33 108.30 4.03 0.30 N 208 7 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 111.79 108.30 3.49 0.30 N 209 7 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 113.35 108.30 5.05 0.30 N 210 7 N1 A DA 5 ? ? C6 A DA 5 ? ? N6 A DA 5 ? ? 114.56 118.60 -4.04 0.60 N 211 7 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.37 108.30 2.07 0.30 N 212 7 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.76 118.60 -3.84 0.60 N 213 7 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 114.59 108.30 6.29 0.30 N 214 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.46 108.30 4.16 0.30 N 215 7 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 112.84 108.30 4.54 0.30 N 216 7 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 111.48 108.30 3.18 0.30 N 217 7 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.66 108.30 5.36 0.30 N 218 7 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.18 108.30 2.88 0.30 N 219 7 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 112.30 108.30 4.00 0.30 N 220 7 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 112.05 108.30 3.75 0.30 N 221 7 N3 A DG 17 ? ? C2 A DG 17 ? ? N2 A DG 17 ? ? 115.30 119.90 -4.60 0.70 N 222 7 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 111.15 108.30 2.85 0.30 N 223 7 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 113.44 108.30 5.14 0.30 N 224 7 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 111.79 108.30 3.49 0.30 N 225 7 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 113.09 108.30 4.79 0.30 N 226 7 "C3'" A DA 23 ? ? "O3'" A DA 23 ? ? P A DA 24 ? ? 126.99 119.70 7.29 1.20 Y 227 7 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 113.48 108.30 5.18 0.30 N 228 7 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 111.09 108.30 2.79 0.30 N 229 7 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 114.97 118.60 -3.63 0.60 N 230 7 "O4'" A DA 26 ? ? "C1'" A DA 26 ? ? N9 A DA 26 ? ? 111.74 108.30 3.44 0.30 N 231 7 N1 A DA 26 ? ? C6 A DA 26 ? ? N6 A DA 26 ? ? 114.99 118.60 -3.61 0.60 N 232 7 "C1'" A DA 28 ? ? "O4'" A DA 28 ? ? "C4'" A DA 28 ? ? 103.88 110.10 -6.22 1.00 N 233 7 "O4'" A DA 28 ? ? "C1'" A DA 28 ? ? N9 A DA 28 ? ? 110.30 108.30 2.00 0.30 N 234 7 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 110.34 108.30 2.04 0.30 N 235 7 N1 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 123.03 118.90 4.13 0.60 N 236 7 N3 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 116.70 121.90 -5.20 0.70 N 237 7 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 114.19 108.30 5.89 0.30 N 238 7 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 110.38 108.30 2.08 0.30 N 239 7 N3 A DT 32 ? ? C2 A DT 32 ? ? O2 A DT 32 ? ? 118.17 122.30 -4.13 0.60 N 240 7 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 117.82 108.30 9.52 0.30 N 241 7 N3 A DC 34 ? ? C2 A DC 34 ? ? O2 A DC 34 ? ? 117.69 121.90 -4.21 0.70 N 242 7 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 111.53 108.30 3.23 0.30 N 243 7 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 110.77 108.30 2.47 0.30 N 244 7 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 113.42 108.30 5.12 0.30 N 245 7 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 111.88 108.30 3.58 0.30 N 246 8 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.52 108.30 3.22 0.30 N 247 8 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.54 108.30 4.24 0.30 N 248 8 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.49 108.30 3.19 0.30 N 249 8 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.08 108.30 2.78 0.30 N 250 8 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 110.19 108.30 1.89 0.30 N 251 8 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 117.55 121.90 -4.35 0.70 N 252 8 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 113.17 108.30 4.87 0.30 N 253 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 114.26 108.30 5.96 0.30 N 254 8 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 114.27 108.30 5.97 0.30 N 255 8 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 113.90 108.30 5.60 0.30 N 256 8 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.40 108.30 3.10 0.30 N 257 8 "O4'" A DC 15 ? ? "C4'" A DC 15 ? ? "C3'" A DC 15 ? ? 109.63 106.00 3.63 0.60 N 258 8 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 112.94 108.30 4.64 0.30 N 259 8 N9 A DG 17 ? ? C4 A DG 17 ? ? C5 A DG 17 ? ? 107.95 105.40 2.55 0.40 N 260 8 N3 A DG 17 ? ? C2 A DG 17 ? ? N2 A DG 17 ? ? 115.22 119.90 -4.68 0.70 N 261 8 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.48 108.30 3.18 0.30 N 262 8 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 113.02 108.30 4.72 0.30 N 263 8 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 114.38 108.30 6.08 0.30 N 264 8 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 110.46 108.30 2.16 0.30 N 265 8 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 112.39 108.30 4.09 0.30 N 266 8 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.30 108.30 2.00 0.30 N 267 8 "O4'" A DA 26 ? ? "C1'" A DA 26 ? ? N9 A DA 26 ? ? 110.31 108.30 2.01 0.30 N 268 8 "O4'" A DA 28 ? ? "C1'" A DA 28 ? ? N9 A DA 28 ? ? 110.10 108.30 1.80 0.30 N 269 8 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 113.09 108.30 4.79 0.30 N 270 8 N1 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 122.59 118.90 3.69 0.60 N 271 8 N3 A DC 29 ? ? C2 A DC 29 ? ? O2 A DC 29 ? ? 116.68 121.90 -5.22 0.70 N 272 8 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 111.42 108.30 3.12 0.30 N 273 8 C6 A DT 30 ? ? C5 A DT 30 ? ? C7 A DT 30 ? ? 119.16 122.90 -3.74 0.60 N 274 8 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 111.07 108.30 2.77 0.30 N 275 8 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 110.39 108.30 2.09 0.30 N 276 8 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 113.69 108.30 5.39 0.30 N 277 8 N1 A DA 33 ? ? C6 A DA 33 ? ? N6 A DA 33 ? ? 113.21 118.60 -5.39 0.60 N 278 8 "O4'" A DC 34 ? ? "C1'" A DC 34 ? ? N1 A DC 34 ? ? 110.51 108.30 2.21 0.30 N 279 8 N3 A DC 34 ? ? C2 A DC 34 ? ? O2 A DC 34 ? ? 117.67 121.90 -4.23 0.70 N 280 8 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 110.25 108.30 1.95 0.30 N 281 8 "O4'" A DT 38 ? ? "C4'" A DT 38 ? ? "C3'" A DT 38 ? ? 101.70 104.50 -2.80 0.40 N 282 8 "C5'" A DT 38 ? ? "C4'" A DT 38 ? ? "O4'" A DT 38 ? ? 116.97 109.80 7.17 1.10 N 283 8 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 111.68 108.30 3.38 0.30 N 284 8 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 111.37 108.30 3.07 0.30 N 285 8 "O4'" A DG 40 ? ? "C1'" A DG 40 ? ? N9 A DG 40 ? ? 111.25 108.30 2.95 0.30 N 286 8 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 111.18 108.30 2.88 0.30 N 287 9 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.98 108.30 3.68 0.30 N 288 9 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 112.64 108.30 4.34 0.30 N 289 9 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 110.85 108.30 2.55 0.30 N 290 9 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 110.32 108.30 2.02 0.30 N 291 9 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 112.24 108.30 3.94 0.30 N 292 9 "C1'" A DG 9 ? ? "O4'" A DG 9 ? ? "C4'" A DG 9 ? ? 104.05 110.10 -6.05 1.00 N 293 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 113.13 108.30 4.83 0.30 N 294 9 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 113.41 108.30 5.11 0.30 N 295 9 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 112.21 108.30 3.91 0.30 N 296 9 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 111.45 108.30 3.15 0.30 N 297 9 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 112.75 108.30 4.45 0.30 N 298 9 "O4'" A DC 19 ? ? "C1'" A DC 19 ? ? N1 A DC 19 ? ? 111.67 108.30 3.37 0.30 N 299 9 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 113.81 108.30 5.51 0.30 N 300 9 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 113.24 108.30 4.94 0.30 N 301 9 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.60 108.30 2.30 0.30 N 302 9 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 110.36 108.30 2.06 0.30 N 303 9 N1 A DA 25 ? ? C6 A DA 25 ? ? N6 A DA 25 ? ? 114.92 118.60 -3.68 0.60 N 304 9 "O4'" A DA 26 ? ? "C1'" A DA 26 ? ? N9 A DA 26 ? ? 110.16 108.30 1.86 0.30 N 305 9 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 112.73 108.30 4.43 0.30 N 306 9 "O4'" A DT 30 ? ? "C1'" A DT 30 ? ? N1 A DT 30 ? ? 117.07 108.30 8.77 0.30 N 307 9 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 114.60 108.30 6.30 0.30 N 308 9 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 110.50 108.30 2.20 0.30 N 309 9 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 114.14 108.30 5.84 0.30 N 310 9 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 115.31 108.30 7.01 0.30 N 311 9 N3 A DT 37 ? ? C2 A DT 37 ? ? O2 A DT 37 ? ? 118.68 122.30 -3.62 0.60 N 312 9 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 113.01 108.30 4.71 0.30 N 313 9 "O4'" A DG 40 ? ? "C1'" A DG 40 ? ? N9 A DG 40 ? ? 110.37 108.30 2.07 0.30 N 314 9 "O4'" A DA 41 ? ? "C1'" A DA 41 ? ? N9 A DA 41 ? ? 110.75 108.30 2.45 0.30 N 315 10 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 111.47 108.30 3.17 0.30 N 316 10 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 114.47 108.30 6.17 0.30 N 317 10 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.77 108.30 3.47 0.30 N 318 10 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.16 108.30 3.86 0.30 N 319 10 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 114.75 118.60 -3.85 0.60 N 320 10 "O4'" A DC 7 ? ? "C1'" A DC 7 ? ? N1 A DC 7 ? ? 115.14 108.30 6.84 0.30 N 321 10 N1 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 122.72 118.90 3.82 0.60 N 322 10 N3 A DC 7 ? ? C2 A DC 7 ? ? O2 A DC 7 ? ? 116.70 121.90 -5.20 0.70 N 323 10 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 118.67 122.30 -3.63 0.60 N 324 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.31 108.30 4.01 0.30 N 325 10 "O4'" A DC 10 ? ? "C1'" A DC 10 ? ? N1 A DC 10 ? ? 113.94 108.30 5.64 0.30 N 326 10 "O4'" A DT 11 ? ? "C1'" A DT 11 ? ? N1 A DT 11 ? ? 110.96 108.30 2.66 0.30 N 327 10 "O5'" A DG 12 ? ? "C5'" A DG 12 ? ? "C4'" A DG 12 ? ? 103.77 109.40 -5.63 0.80 N 328 10 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 115.12 108.30 6.82 0.30 N 329 10 "C3'" A DG 12 ? ? "O3'" A DG 12 ? ? P A DC 13 ? ? 127.63 119.70 7.93 1.20 Y 330 10 "O4'" A DC 13 ? ? "C1'" A DC 13 ? ? N1 A DC 13 ? ? 110.38 108.30 2.08 0.30 N 331 10 "O4'" A DG 14 ? ? "C1'" A DG 14 ? ? N9 A DG 14 ? ? 111.18 108.30 2.88 0.30 N 332 10 "O4'" A DC 16 ? ? "C1'" A DC 16 ? ? N1 A DC 16 ? ? 112.12 108.30 3.82 0.30 N 333 10 "O4'" A DG 20 ? ? "C1'" A DG 20 ? ? N9 A DG 20 ? ? 110.22 108.30 1.92 0.30 N 334 10 "O4'" A DG 21 ? ? "C1'" A DG 21 ? ? N9 A DG 21 ? ? 112.04 108.30 3.74 0.30 N 335 10 "O4'" A DG 22 ? ? "C1'" A DG 22 ? ? N9 A DG 22 ? ? 113.23 108.30 4.93 0.30 N 336 10 "O4'" A DA 23 ? ? "C1'" A DA 23 ? ? N9 A DA 23 ? ? 113.75 108.30 5.45 0.30 N 337 10 "O4'" A DA 24 ? ? "C1'" A DA 24 ? ? N9 A DA 24 ? ? 110.11 108.30 1.81 0.30 N 338 10 "O4'" A DA 25 ? ? "C1'" A DA 25 ? ? N9 A DA 25 ? ? 111.52 108.30 3.22 0.30 N 339 10 "O4'" A DA 28 ? ? "C1'" A DA 28 ? ? N9 A DA 28 ? ? 110.97 108.30 2.67 0.30 N 340 10 "O4'" A DC 29 ? ? "C1'" A DC 29 ? ? N1 A DC 29 ? ? 112.99 108.30 4.69 0.30 N 341 10 "O4'" A DG 31 ? ? "C1'" A DG 31 ? ? N9 A DG 31 ? ? 113.28 108.30 4.98 0.30 N 342 10 "O4'" A DT 32 ? ? "C1'" A DT 32 ? ? N1 A DT 32 ? ? 112.41 108.30 4.11 0.30 N 343 10 "O4'" A DA 33 ? ? "C1'" A DA 33 ? ? N9 A DA 33 ? ? 111.80 108.30 3.50 0.30 N 344 10 N1 A DA 33 ? ? C6 A DA 33 ? ? N6 A DA 33 ? ? 114.61 118.60 -3.99 0.60 N 345 10 "O4'" A DC 34 ? ? "C1'" A DC 34 ? ? N1 A DC 34 ? ? 111.02 108.30 2.72 0.30 N 346 10 "O4'" A DT 37 ? ? "C1'" A DT 37 ? ? N1 A DT 37 ? ? 113.59 108.30 5.28 0.30 N 347 10 "O4'" A DT 38 ? ? "C1'" A DT 38 ? ? N1 A DT 38 ? ? 111.64 108.30 3.34 0.30 N 348 10 "O4'" A DA 39 ? ? "C1'" A DA 39 ? ? N9 A DA 39 ? ? 113.14 108.30 4.84 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 3 ? ? 0.107 'SIDE CHAIN' 2 1 DT A 4 ? ? 0.079 'SIDE CHAIN' 3 1 DT A 8 ? ? 0.068 'SIDE CHAIN' 4 1 DG A 9 ? ? 0.095 'SIDE CHAIN' 5 1 DC A 10 ? ? 0.084 'SIDE CHAIN' 6 1 DG A 12 ? ? 0.151 'SIDE CHAIN' 7 1 DC A 15 ? ? 0.067 'SIDE CHAIN' 8 1 DC A 18 ? ? 0.120 'SIDE CHAIN' 9 1 DT A 30 ? ? 0.160 'SIDE CHAIN' 10 1 DG A 31 ? ? 0.090 'SIDE CHAIN' 11 1 DG A 35 ? ? 0.069 'SIDE CHAIN' 12 1 DT A 38 ? ? 0.079 'SIDE CHAIN' 13 2 DC A 3 ? ? 0.102 'SIDE CHAIN' 14 2 DT A 4 ? ? 0.121 'SIDE CHAIN' 15 2 DA A 6 ? ? 0.055 'SIDE CHAIN' 16 2 DC A 7 ? ? 0.066 'SIDE CHAIN' 17 2 DG A 9 ? ? 0.065 'SIDE CHAIN' 18 2 DC A 10 ? ? 0.136 'SIDE CHAIN' 19 2 DT A 11 ? ? 0.075 'SIDE CHAIN' 20 2 DG A 14 ? ? 0.092 'SIDE CHAIN' 21 2 DC A 18 ? ? 0.113 'SIDE CHAIN' 22 2 DG A 20 ? ? 0.099 'SIDE CHAIN' 23 2 DA A 24 ? ? 0.055 'SIDE CHAIN' 24 2 DC A 29 ? ? 0.087 'SIDE CHAIN' 25 2 DG A 31 ? ? 0.085 'SIDE CHAIN' 26 2 DG A 35 ? ? 0.100 'SIDE CHAIN' 27 2 DT A 37 ? ? 0.098 'SIDE CHAIN' 28 3 DC A 3 ? ? 0.102 'SIDE CHAIN' 29 3 DT A 4 ? ? 0.090 'SIDE CHAIN' 30 3 DA A 6 ? ? 0.056 'SIDE CHAIN' 31 3 DC A 7 ? ? 0.175 'SIDE CHAIN' 32 3 DG A 9 ? ? 0.122 'SIDE CHAIN' 33 3 DC A 10 ? ? 0.104 'SIDE CHAIN' 34 3 DG A 14 ? ? 0.135 'SIDE CHAIN' 35 3 DG A 31 ? ? 0.077 'SIDE CHAIN' 36 3 DT A 32 ? ? 0.063 'SIDE CHAIN' 37 3 DG A 35 ? ? 0.076 'SIDE CHAIN' 38 3 DG A 36 ? ? 0.069 'SIDE CHAIN' 39 3 DT A 38 ? ? 0.128 'SIDE CHAIN' 40 4 DC A 3 ? ? 0.078 'SIDE CHAIN' 41 4 DT A 4 ? ? 0.102 'SIDE CHAIN' 42 4 DG A 9 ? ? 0.080 'SIDE CHAIN' 43 4 DC A 10 ? ? 0.080 'SIDE CHAIN' 44 4 DG A 17 ? ? 0.073 'SIDE CHAIN' 45 4 DC A 18 ? ? 0.152 'SIDE CHAIN' 46 4 DG A 21 ? ? 0.066 'SIDE CHAIN' 47 4 DG A 31 ? ? 0.084 'SIDE CHAIN' 48 4 DT A 32 ? ? 0.127 'SIDE CHAIN' 49 4 DG A 35 ? ? 0.066 'SIDE CHAIN' 50 4 DG A 36 ? ? 0.062 'SIDE CHAIN' 51 4 DT A 38 ? ? 0.116 'SIDE CHAIN' 52 5 DC A 3 ? ? 0.104 'SIDE CHAIN' 53 5 DT A 4 ? ? 0.091 'SIDE CHAIN' 54 5 DG A 9 ? ? 0.114 'SIDE CHAIN' 55 5 DC A 10 ? ? 0.116 'SIDE CHAIN' 56 5 DT A 11 ? ? 0.083 'SIDE CHAIN' 57 5 DG A 14 ? ? 0.106 'SIDE CHAIN' 58 5 DC A 15 ? ? 0.058 'SIDE CHAIN' 59 5 DC A 18 ? ? 0.127 'SIDE CHAIN' 60 5 DG A 21 ? ? 0.074 'SIDE CHAIN' 61 5 DA A 24 ? ? 0.054 'SIDE CHAIN' 62 5 DT A 30 ? ? 0.068 'SIDE CHAIN' 63 5 DG A 31 ? ? 0.081 'SIDE CHAIN' 64 5 DT A 32 ? ? 0.129 'SIDE CHAIN' 65 5 DG A 35 ? ? 0.053 'SIDE CHAIN' 66 5 DT A 38 ? ? 0.100 'SIDE CHAIN' 67 6 DC A 3 ? ? 0.089 'SIDE CHAIN' 68 6 DT A 4 ? ? 0.110 'SIDE CHAIN' 69 6 DC A 13 ? ? 0.070 'SIDE CHAIN' 70 6 DG A 14 ? ? 0.129 'SIDE CHAIN' 71 6 DC A 18 ? ? 0.098 'SIDE CHAIN' 72 6 DG A 31 ? ? 0.095 'SIDE CHAIN' 73 6 DT A 32 ? ? 0.061 'SIDE CHAIN' 74 6 DG A 35 ? ? 0.058 'SIDE CHAIN' 75 6 DT A 38 ? ? 0.136 'SIDE CHAIN' 76 6 DA A 39 ? ? 0.067 'SIDE CHAIN' 77 7 DC A 3 ? ? 0.088 'SIDE CHAIN' 78 7 DT A 4 ? ? 0.092 'SIDE CHAIN' 79 7 DG A 9 ? ? 0.074 'SIDE CHAIN' 80 7 DC A 10 ? ? 0.098 'SIDE CHAIN' 81 7 DG A 14 ? ? 0.118 'SIDE CHAIN' 82 7 DC A 18 ? ? 0.132 'SIDE CHAIN' 83 7 DA A 23 ? ? 0.088 'SIDE CHAIN' 84 7 DA A 24 ? ? 0.074 'SIDE CHAIN' 85 7 DC A 29 ? ? 0.097 'SIDE CHAIN' 86 7 DG A 31 ? ? 0.119 'SIDE CHAIN' 87 7 DC A 34 ? ? 0.071 'SIDE CHAIN' 88 7 DG A 35 ? ? 0.075 'SIDE CHAIN' 89 7 DT A 38 ? ? 0.089 'SIDE CHAIN' 90 8 DC A 3 ? ? 0.107 'SIDE CHAIN' 91 8 DT A 4 ? ? 0.092 'SIDE CHAIN' 92 8 DG A 9 ? ? 0.072 'SIDE CHAIN' 93 8 DC A 10 ? ? 0.127 'SIDE CHAIN' 94 8 DT A 11 ? ? 0.065 'SIDE CHAIN' 95 8 DC A 15 ? ? 0.067 'SIDE CHAIN' 96 8 DC A 18 ? ? 0.111 'SIDE CHAIN' 97 8 DG A 31 ? ? 0.125 'SIDE CHAIN' 98 8 DT A 38 ? ? 0.185 'SIDE CHAIN' 99 8 DG A 40 ? ? 0.054 'SIDE CHAIN' 100 9 DC A 3 ? ? 0.114 'SIDE CHAIN' 101 9 DA A 6 ? ? 0.090 'SIDE CHAIN' 102 9 DT A 8 ? ? 0.100 'SIDE CHAIN' 103 9 DG A 9 ? ? 0.065 'SIDE CHAIN' 104 9 DC A 10 ? ? 0.102 'SIDE CHAIN' 105 9 DG A 12 ? ? 0.070 'SIDE CHAIN' 106 9 DG A 14 ? ? 0.076 'SIDE CHAIN' 107 9 DC A 18 ? ? 0.119 'SIDE CHAIN' 108 9 DG A 21 ? ? 0.065 'SIDE CHAIN' 109 9 DG A 31 ? ? 0.082 'SIDE CHAIN' 110 9 DT A 32 ? ? 0.071 'SIDE CHAIN' 111 9 DA A 33 ? ? 0.074 'SIDE CHAIN' 112 9 DC A 34 ? ? 0.078 'SIDE CHAIN' 113 9 DG A 36 ? ? 0.056 'SIDE CHAIN' 114 9 DT A 38 ? ? 0.105 'SIDE CHAIN' 115 10 DC A 3 ? ? 0.080 'SIDE CHAIN' 116 10 DT A 4 ? ? 0.082 'SIDE CHAIN' 117 10 DC A 7 ? ? 0.111 'SIDE CHAIN' 118 10 DT A 8 ? ? 0.088 'SIDE CHAIN' 119 10 DG A 9 ? ? 0.064 'SIDE CHAIN' 120 10 DC A 10 ? ? 0.101 'SIDE CHAIN' 121 10 DT A 11 ? ? 0.075 'SIDE CHAIN' 122 10 DG A 14 ? ? 0.084 'SIDE CHAIN' 123 10 DC A 18 ? ? 0.113 'SIDE CHAIN' 124 10 DT A 30 ? ? 0.115 'SIDE CHAIN' 125 10 DG A 31 ? ? 0.105 'SIDE CHAIN' 126 10 DT A 32 ? ? 0.081 'SIDE CHAIN' 127 10 DG A 35 ? ? 0.081 'SIDE CHAIN' 128 10 DT A 37 ? ? 0.065 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 8Y0F _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8Y0F _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.5 mM DNA, 0.02 mM DSS, 10 mM sodium phosphate, 5 mM Magnesium chloride, 99.96%D2O' _pdbx_nmr_sample_details.solvent_system 99.96%D2O _pdbx_nmr_sample_details.label 1 _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 DNA 0.5 ? mM 'natural abundance' 1 DSS 0.02 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 'Magnesium chloride' 5 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 277 _pdbx_nmr_exptl_sample_conditions.pressure_units bar _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 15 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic # loop_ _pdbx_nmr_refine.entry_id _pdbx_nmr_refine.method _pdbx_nmr_refine.details _pdbx_nmr_refine.software_ordinal 8Y0F 'simulated annealing' ? 2 8Y0F 'restrained energy minimization' ? 3 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' TopSpin ? 'Bruker Biospin' 2 'structure calculation' GROMACS ? 'Abraham, Alekseenko, Bauer, Bergh, Blau, Briand, Doijade,... and Zhmurov' 3 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8Y0F 'double helix' 8Y0F 'b-form double helix' 8Y0F 'hairpin loop' 8Y0F 'mismatched base pair' 8Y0F 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 2 1_555 A DA 41 1_555 -0.166 -0.051 0.044 7.408 -10.583 -2.119 1 A_DT2:DA41_A A 2 ? A 41 ? 20 1 1 A DC 3 1_555 A DG 40 1_555 0.196 -0.152 0.269 -11.444 -18.595 -0.354 2 A_DC3:DG40_A A 3 ? A 40 ? 19 1 1 A DT 4 1_555 A DA 39 1_555 -0.310 0.031 -0.059 -24.244 -12.756 -7.980 3 A_DT4:DA39_A A 4 ? A 39 ? 20 1 1 A DA 5 1_555 A DT 38 1_555 0.026 -0.088 0.055 -8.078 -8.180 2.666 4 A_DA5:DT38_A A 5 ? A 38 ? 20 1 1 A DA 6 1_555 A DT 37 1_555 0.093 -0.117 -0.018 -10.317 10.456 0.457 5 A_DA6:DT37_A A 6 ? A 37 ? 20 1 1 A DC 18 1_555 A DG 36 1_555 0.230 -0.097 0.409 -17.894 -10.135 -1.314 6 A_DC18:DG36_A A 18 ? A 36 ? 19 1 1 A DC 19 1_555 A DG 35 1_555 0.389 -0.193 0.238 -7.183 -4.497 -1.797 7 A_DC19:DG35_A A 19 ? A 35 ? 19 1 1 A DG 20 1_555 A DC 34 1_555 -0.333 -0.190 -0.135 5.065 15.712 -2.732 8 A_DG20:DC34_A A 20 ? A 34 ? 19 1 1 A DT 8 1_555 A DG 14 1_555 -4.155 0.708 -0.044 -19.861 -2.085 -18.938 9 A_DT8:DG14_A A 8 ? A 14 ? ? 1 1 A DG 9 1_555 A DC 13 1_555 -0.536 -0.179 0.219 18.785 8.269 -1.856 10 A_DG9:DC13_A A 9 ? A 13 ? 19 1 1 A DC 10 1_555 A DG 12 1_555 0.348 0.093 -0.236 41.430 -9.885 4.208 11 A_DC10:DG12_A A 10 ? A 12 ? 19 1 1 A DG 22 1_555 A DT 32 1_555 0.246 -1.005 -0.141 -27.051 20.429 159.546 12 A_DG22:DT32_A A 22 ? A 32 ? 27 2 1 A DA 23 1_555 A DG 31 1_555 0.035 1.551 -0.094 -0.942 13.991 -22.635 13 A_DA23:DG31_A A 23 ? A 31 ? 8 1 1 A DA 24 1_555 A DT 30 1_555 0.042 0.001 0.596 20.600 8.054 0.041 14 A_DA24:DT30_A A 24 ? A 30 ? 20 1 1 A DA 25 1_555 A DA 28 1_555 6.207 -4.321 -0.589 34.680 -6.016 -22.123 15 A_DA25:DA28_A A 25 ? A 28 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 2 1_555 A DA 41 1_555 A DC 3 1_555 A DG 40 1_555 -0.350 -0.815 3.636 -0.541 -0.195 43.529 -1.078 0.414 3.643 -0.263 0.729 43.533 1 AA_DT2DC3:DG40DA41_AA A 2 ? A 41 ? A 3 ? A 40 ? 1 A DC 3 1_555 A DG 40 1_555 A DT 4 1_555 A DA 39 1_555 -0.630 0.786 3.521 -0.122 -3.412 38.520 1.634 0.936 3.443 -5.160 0.184 38.666 2 AA_DC3DT4:DA39DG40_AA A 3 ? A 40 ? A 4 ? A 39 ? 1 A DT 4 1_555 A DA 39 1_555 A DA 5 1_555 A DT 38 1_555 0.790 1.246 3.048 -4.895 6.936 25.804 0.977 -2.869 3.073 15.023 10.602 27.142 3 AA_DT4DA5:DT38DA39_AA A 4 ? A 39 ? A 5 ? A 38 ? 1 A DA 5 1_555 A DT 38 1_555 A DA 6 1_555 A DT 37 1_555 -0.622 0.853 3.387 -2.553 8.141 35.158 0.144 0.617 3.526 13.238 4.152 36.147 4 AA_DA5DA6:DT37DT38_AA A 5 ? A 38 ? A 6 ? A 37 ? 1 A DA 6 1_555 A DT 37 1_555 A DC 18 1_555 A DG 36 1_555 2.584 0.269 3.441 -14.065 0.152 -36.283 -0.426 1.830 4.127 -0.233 -21.612 -38.828 5 AA_DA6DC18:DG36DT37_AA A 6 ? A 37 ? A 18 ? A 36 ? 1 A DC 18 1_555 A DG 36 1_555 A DC 19 1_555 A DG 35 1_555 -0.811 2.113 3.494 -4.014 17.440 11.453 -4.750 -0.212 3.776 56.169 12.929 21.222 6 AA_DC18DC19:DG35DG36_AA A 18 ? A 36 ? A 19 ? A 35 ? 1 A DC 19 1_555 A DG 35 1_555 A DG 20 1_555 A DC 34 1_555 0.560 1.502 3.178 0.169 -5.491 41.395 2.652 -0.769 2.966 -7.727 -0.237 41.742 7 AA_DC19DG20:DC34DG35_AA A 19 ? A 35 ? A 20 ? A 34 ? 1 A DT 8 1_555 A DG 14 1_555 A DG 9 1_555 A DC 13 1_555 2.171 1.545 2.524 -4.240 -5.765 24.537 4.584 -5.713 1.728 -13.209 9.715 25.543 8 AA_DT8DG9:DC13DG14_AA A 8 ? A 14 ? A 9 ? A 13 ? 1 A DG 9 1_555 A DC 13 1_555 A DC 10 1_555 A DG 12 1_555 -0.068 0.024 3.017 3.649 -4.799 23.815 1.419 1.197 2.912 -11.398 -8.665 24.556 9 AA_DG9DC10:DG12DC13_AA A 9 ? A 13 ? A 10 ? A 12 ? 1 A DG 22 1_555 A DT 32 1_555 A DA 23 1_555 A DG 31 1_555 2.238 2.015 -0.917 -133.717 116.249 23.432 1.398 -0.670 -0.546 58.861 67.705 177.242 10 AA_DG22DA23:DG31DT32_AA A 22 ? A 32 ? A 23 ? A 31 ? 1 A DA 23 1_555 A DG 31 1_555 A DA 24 1_555 A DT 30 1_555 -0.011 -0.555 2.872 -8.537 9.014 13.803 -5.806 -3.834 1.878 30.604 28.984 18.545 11 AA_DA23DA24:DT30DG31_AA A 23 ? A 31 ? A 24 ? A 30 ? 1 A DA 24 1_555 A DT 30 1_555 A DA 25 1_555 A DA 28 1_555 1.437 0.571 3.309 11.607 -1.121 77.776 0.483 -0.802 3.455 -0.888 -9.196 78.508 12 AA_DA24DA25:DA28DT30_AA A 24 ? A 30 ? A 25 ? A 28 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8Y0F _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_