HEADER VIRAL PROTEIN/IMMUNE SYSTEM 02-FEB-24 8Y6A TITLE CRYO-EM STRUCTURE OF SARS-COV-2 OMICRON BA.2.86 RBD IN COMPLEX WITH TITLE 2 HUMAN ACE2 AND S309 FAB COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANGIOTENSIN-CONVERTING ENZYME 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ACE-RELATED CARBOXYPEPTIDASE,ANGIOTENSIN-CONVERTING ENZYME COMPND 5 HOMOLOG,ACEH,METALLOPROTEASE MPROT15; COMPND 6 EC: 3.4.17.23,3.4.17.-; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SPIKE PROTEIN S1; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: RBD; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: OMICRON BA.2.86; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: HEAVY CHAIN OF S309 FAB; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: LIGHT CHAIN OF S309 FAB; COMPND 20 CHAIN: D; COMPND 21 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ACE2, UNQ868/PRO1885; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 10 2; SOURCE 11 ORGANISM_TAXID: 2697049; SOURCE 12 GENE: S, 2; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 MOL_ID: 4; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, OMICRON, BA.2.86, RBD, S309, HACE2, VIRAL PROTEIN, VIRAL KEYWDS 2 PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR L.J.LI,Y.H.GU,J.X.QI,G.F.GAO REVDAT 4 16-OCT-24 8Y6A 1 REMARK REVDAT 3 21-AUG-24 8Y6A 1 JRNL REVDAT 2 07-AUG-24 8Y6A 1 JRNL REVDAT 1 03-JUL-24 8Y6A 0 JRNL AUTH L.LI,K.SHI,Y.GU,Z.XU,C.SHU,D.LI,J.SUN,M.CONG,X.LI,X.ZHAO, JRNL AUTH 2 G.YU,S.HU,H.TAN,J.QI,X.MA,K.LIU,G.F.GAO JRNL TITL SPIKE STRUCTURES, RECEPTOR BINDING, AND IMMUNE ESCAPE OF JRNL TITL 2 RECENTLY CIRCULATING SARS-COV-2 OMICRON BA.2.86, JN.1, EG.5, JRNL TITL 3 EG.5.1, AND HV.1 SUB-VARIANTS. JRNL REF STRUCTURE V. 32 1055 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 39013463 JRNL DOI 10.1016/J.STR.2024.06.012 REMARK 2 REMARK 2 RESOLUTION. 2.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.720 REMARK 3 NUMBER OF PARTICLES : 346979 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8Y6A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300044993. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 OMICRON BA.2.86 RBD REMARK 245 IN COMPLEX WITH HUMAN ACE2 AND REMARK 245 S309 FAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TRP A 606 REMARK 465 SER A 607 REMARK 465 THR A 608 REMARK 465 ASP A 609 REMARK 465 TRP A 610 REMARK 465 SER A 611 REMARK 465 PRO A 612 REMARK 465 TYR A 613 REMARK 465 ALA A 614 REMARK 465 ASP A 615 REMARK 465 HIS A 616 REMARK 465 HIS A 617 REMARK 465 HIS A 618 REMARK 465 HIS A 619 REMARK 465 HIS A 620 REMARK 465 HIS A 621 REMARK 465 ARG B 319 REMARK 465 VAL B 320 REMARK 465 GLN B 321 REMARK 465 PRO B 322 REMARK 465 THR B 323 REMARK 465 GLU B 324 REMARK 465 SER B 325 REMARK 465 ILE B 326 REMARK 465 VAL B 327 REMARK 465 ARG B 328 REMARK 465 PHE B 329 REMARK 465 PRO B 330 REMARK 465 ASN B 331 REMARK 465 VAL B 332 REMARK 465 THR B 333 REMARK 465 LEU B 517 REMARK 465 LEU B 518 REMARK 465 HIS B 519 REMARK 465 ALA B 520 REMARK 465 PRO B 521 REMARK 465 ALA B 522 REMARK 465 THR B 523 REMARK 465 VAL B 524 REMARK 465 CYS B 525 REMARK 465 GLY B 526 REMARK 465 PRO B 527 REMARK 465 LYS B 528 REMARK 465 LYS B 529 REMARK 465 SER B 530 REMARK 465 THR B 531 REMARK 465 ASN B 532 REMARK 465 LEU B 533 REMARK 465 VAL B 534 REMARK 465 LYS B 535 REMARK 465 ASN B 536 REMARK 465 LYS B 537 REMARK 465 CYS B 538 REMARK 465 VAL B 539 REMARK 465 ASN B 540 REMARK 465 PHE B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 465 HIS B 547 REMARK 465 SER C 146 REMARK 465 GLY C 147 REMARK 465 GLY C 148 REMARK 465 SER C 229 REMARK 465 CYS C 230 REMARK 465 GLU D 213 REMARK 465 CYS D 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 24 34.31 -82.54 REMARK 500 HIS A 34 -64.74 -95.02 REMARK 500 HIS A 34 -68.49 -91.16 REMARK 500 ASN A 53 86.27 -150.21 REMARK 500 ASN A 154 -52.44 -121.39 REMARK 500 ASP A 198 -177.25 -172.57 REMARK 500 PRO A 258 -19.86 -48.85 REMARK 500 ASN A 290 -178.36 -69.15 REMARK 500 ASN A 338 -122.86 33.34 REMARK 500 ILE A 446 -60.91 -97.43 REMARK 500 ASP A 499 -60.18 -169.25 REMARK 500 PRO A 500 85.28 -57.12 REMARK 500 ALA A 501 -40.42 -163.46 REMARK 500 SER A 502 -50.72 -23.44 REMARK 500 VAL A 573 -52.52 -120.45 REMARK 500 PRO B 337 48.76 -63.52 REMARK 500 ASN B 343 43.99 -91.51 REMARK 500 TRP B 353 154.50 -48.17 REMARK 500 PHE B 375 -117.34 52.55 REMARK 500 ILE B 402 -67.74 -107.87 REMARK 500 LYS B 403 174.81 177.36 REMARK 500 TYR B 421 -16.40 -154.65 REMARK 500 ASN B 477 -128.18 56.97 REMARK 500 TYR C 100 29.88 -141.50 REMARK 500 GLU C 108 -71.85 -63.69 REMARK 500 SER C 109 160.28 177.06 REMARK 500 PRO C 161 -88.07 -86.59 REMARK 500 LEU C 173 40.27 -103.81 REMARK 500 ALA D 52 -7.00 71.44 REMARK 500 SER D 53 -37.36 -130.81 REMARK 500 HIS D 92 29.25 -140.04 REMARK 500 SER D 95 159.83 63.85 REMARK 500 ASP D 151 -78.80 65.64 REMARK 500 PRO D 204 76.41 -69.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 HIS A 34 10.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 374 NE2 REMARK 620 2 HIS A 378 NE2 72.9 REMARK 620 3 GLU A 402 OE1 110.1 105.4 REMARK 620 4 GLU A 402 OE2 148.8 85.4 53.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-38983 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF SARS-COV-2 OMICRON BA.2.86 RBD IN COMPLEX WITH REMARK 900 HUMAN ACE2 AND S309 FAB DBREF 8Y6A A 19 615 UNP Q9BYF1 ACE2_HUMAN 19 615 DBREF 8Y6A B 319 541 UNP P0DTC2 SPIKE_SARS2 319 541 DBREF 8Y6A C 1 230 PDB 8Y6A 8Y6A 1 230 DBREF 8Y6A D 1 214 PDB 8Y6A 8Y6A 1 214 SEQADV 8Y6A HIS A 616 UNP Q9BYF1 EXPRESSION TAG SEQADV 8Y6A HIS A 617 UNP Q9BYF1 EXPRESSION TAG SEQADV 8Y6A HIS A 618 UNP Q9BYF1 EXPRESSION TAG SEQADV 8Y6A HIS A 619 UNP Q9BYF1 EXPRESSION TAG SEQADV 8Y6A HIS A 620 UNP Q9BYF1 EXPRESSION TAG SEQADV 8Y6A HIS A 621 UNP Q9BYF1 EXPRESSION TAG SEQADV 8Y6A VAL B 332 UNP P0DTC2 ILE 332 VARIANT SEQADV 8Y6A HIS B 339 UNP P0DTC2 GLY 339 VARIANT SEQADV 8Y6A THR B 356 UNP P0DTC2 LYS 356 VARIANT SEQADV 8Y6A PHE B 371 UNP P0DTC2 SER 371 VARIANT SEQADV 8Y6A PRO B 373 UNP P0DTC2 SER 373 VARIANT SEQADV 8Y6A PHE B 375 UNP P0DTC2 SER 375 VARIANT SEQADV 8Y6A ALA B 376 UNP P0DTC2 THR 376 VARIANT SEQADV 8Y6A LYS B 403 UNP P0DTC2 ARG 403 VARIANT SEQADV 8Y6A ASN B 405 UNP P0DTC2 ASP 405 VARIANT SEQADV 8Y6A SER B 408 UNP P0DTC2 ARG 408 VARIANT SEQADV 8Y6A ASN B 417 UNP P0DTC2 LYS 417 VARIANT SEQADV 8Y6A LYS B 440 UNP P0DTC2 ASN 440 VARIANT SEQADV 8Y6A HIS B 445 UNP P0DTC2 VAL 445 VARIANT SEQADV 8Y6A SER B 446 UNP P0DTC2 GLY 446 VARIANT SEQADV 8Y6A ASP B 450 UNP P0DTC2 ASN 450 VARIANT SEQADV 8Y6A TRP B 452 UNP P0DTC2 LEU 452 VARIANT SEQADV 8Y6A LYS B 460 UNP P0DTC2 ASN 460 VARIANT SEQADV 8Y6A ASN B 477 UNP P0DTC2 SER 477 VARIANT SEQADV 8Y6A LYS B 478 UNP P0DTC2 THR 478 VARIANT SEQADV 8Y6A LYS B 481 UNP P0DTC2 ASN 481 VARIANT SEQADV 8Y6A B UNP P0DTC2 VAL 483 DELETION SEQADV 8Y6A LYS B 484 UNP P0DTC2 GLU 484 VARIANT SEQADV 8Y6A PRO B 486 UNP P0DTC2 PHE 486 VARIANT SEQADV 8Y6A ARG B 498 UNP P0DTC2 GLN 498 VARIANT SEQADV 8Y6A TYR B 501 UNP P0DTC2 ASN 501 VARIANT SEQADV 8Y6A HIS B 505 UNP P0DTC2 TYR 505 VARIANT SEQADV 8Y6A HIS B 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8Y6A HIS B 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8Y6A HIS B 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8Y6A HIS B 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8Y6A HIS B 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8Y6A HIS B 547 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 603 SER THR ILE GLU GLU GLN ALA LYS THR PHE LEU ASP LYS SEQRES 2 A 603 PHE ASN HIS GLU ALA GLU ASP LEU PHE TYR GLN SER SER SEQRES 3 A 603 LEU ALA SER TRP ASN TYR ASN THR ASN ILE THR GLU GLU SEQRES 4 A 603 ASN VAL GLN ASN MET ASN ASN ALA GLY ASP LYS TRP SER SEQRES 5 A 603 ALA PHE LEU LYS GLU GLN SER THR LEU ALA GLN MET TYR SEQRES 6 A 603 PRO LEU GLN GLU ILE GLN ASN LEU THR VAL LYS LEU GLN SEQRES 7 A 603 LEU GLN ALA LEU GLN GLN ASN GLY SER SER VAL LEU SER SEQRES 8 A 603 GLU ASP LYS SER LYS ARG LEU ASN THR ILE LEU ASN THR SEQRES 9 A 603 MET SER THR ILE TYR SER THR GLY LYS VAL CYS ASN PRO SEQRES 10 A 603 ASP ASN PRO GLN GLU CYS LEU LEU LEU GLU PRO GLY LEU SEQRES 11 A 603 ASN GLU ILE MET ALA ASN SER LEU ASP TYR ASN GLU ARG SEQRES 12 A 603 LEU TRP ALA TRP GLU SER TRP ARG SER GLU VAL GLY LYS SEQRES 13 A 603 GLN LEU ARG PRO LEU TYR GLU GLU TYR VAL VAL LEU LYS SEQRES 14 A 603 ASN GLU MET ALA ARG ALA ASN HIS TYR GLU ASP TYR GLY SEQRES 15 A 603 ASP TYR TRP ARG GLY ASP TYR GLU VAL ASN GLY VAL ASP SEQRES 16 A 603 GLY TYR ASP TYR SER ARG GLY GLN LEU ILE GLU ASP VAL SEQRES 17 A 603 GLU HIS THR PHE GLU GLU ILE LYS PRO LEU TYR GLU HIS SEQRES 18 A 603 LEU HIS ALA TYR VAL ARG ALA LYS LEU MET ASN ALA TYR SEQRES 19 A 603 PRO SER TYR ILE SER PRO ILE GLY CYS LEU PRO ALA HIS SEQRES 20 A 603 LEU LEU GLY ASP MET TRP GLY ARG PHE TRP THR ASN LEU SEQRES 21 A 603 TYR SER LEU THR VAL PRO PHE GLY GLN LYS PRO ASN ILE SEQRES 22 A 603 ASP VAL THR ASP ALA MET VAL ASP GLN ALA TRP ASP ALA SEQRES 23 A 603 GLN ARG ILE PHE LYS GLU ALA GLU LYS PHE PHE VAL SER SEQRES 24 A 603 VAL GLY LEU PRO ASN MET THR GLN GLY PHE TRP GLU ASN SEQRES 25 A 603 SER MET LEU THR ASP PRO GLY ASN VAL GLN LYS ALA VAL SEQRES 26 A 603 CYS HIS PRO THR ALA TRP ASP LEU GLY LYS GLY ASP PHE SEQRES 27 A 603 ARG ILE LEU MET CYS THR LYS VAL THR MET ASP ASP PHE SEQRES 28 A 603 LEU THR ALA HIS HIS GLU MET GLY HIS ILE GLN TYR ASP SEQRES 29 A 603 MET ALA TYR ALA ALA GLN PRO PHE LEU LEU ARG ASN GLY SEQRES 30 A 603 ALA ASN GLU GLY PHE HIS GLU ALA VAL GLY GLU ILE MET SEQRES 31 A 603 SER LEU SER ALA ALA THR PRO LYS HIS LEU LYS SER ILE SEQRES 32 A 603 GLY LEU LEU SER PRO ASP PHE GLN GLU ASP ASN GLU THR SEQRES 33 A 603 GLU ILE ASN PHE LEU LEU LYS GLN ALA LEU THR ILE VAL SEQRES 34 A 603 GLY THR LEU PRO PHE THR TYR MET LEU GLU LYS TRP ARG SEQRES 35 A 603 TRP MET VAL PHE LYS GLY GLU ILE PRO LYS ASP GLN TRP SEQRES 36 A 603 MET LYS LYS TRP TRP GLU MET LYS ARG GLU ILE VAL GLY SEQRES 37 A 603 VAL VAL GLU PRO VAL PRO HIS ASP GLU THR TYR CYS ASP SEQRES 38 A 603 PRO ALA SER LEU PHE HIS VAL SER ASN ASP TYR SER PHE SEQRES 39 A 603 ILE ARG TYR TYR THR ARG THR LEU TYR GLN PHE GLN PHE SEQRES 40 A 603 GLN GLU ALA LEU CYS GLN ALA ALA LYS HIS GLU GLY PRO SEQRES 41 A 603 LEU HIS LYS CYS ASP ILE SER ASN SER THR GLU ALA GLY SEQRES 42 A 603 GLN LYS LEU PHE ASN MET LEU ARG LEU GLY LYS SER GLU SEQRES 43 A 603 PRO TRP THR LEU ALA LEU GLU ASN VAL VAL GLY ALA LYS SEQRES 44 A 603 ASN MET ASN VAL ARG PRO LEU LEU ASN TYR PHE GLU PRO SEQRES 45 A 603 LEU PHE THR TRP LEU LYS ASP GLN ASN LYS ASN SER PHE SEQRES 46 A 603 VAL GLY TRP SER THR ASP TRP SER PRO TYR ALA ASP HIS SEQRES 47 A 603 HIS HIS HIS HIS HIS SEQRES 1 B 228 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 B 228 VAL THR ASN LEU CYS PRO PHE HIS GLU VAL PHE ASN ALA SEQRES 3 B 228 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG THR ARG SEQRES 4 B 228 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 B 228 PHE ALA PRO PHE PHE ALA PHE LYS CYS TYR GLY VAL SER SEQRES 6 B 228 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 B 228 ALA ASP SER PHE VAL ILE LYS GLY ASN GLU VAL SER GLN SEQRES 8 B 228 ILE ALA PRO GLY GLN THR GLY ASN ILE ALA ASP TYR ASN SEQRES 9 B 228 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 B 228 TRP ASN SER ASN LYS LEU ASP SER LYS HIS SER GLY ASN SEQRES 11 B 228 TYR ASP TYR TRP TYR ARG LEU PHE ARG LYS SER LYS LEU SEQRES 12 B 228 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 B 228 ALA GLY ASN LYS PRO CYS LYS GLY LYS GLY PRO ASN CYS SEQRES 14 B 228 TYR PHE PRO LEU GLN SER TYR GLY PHE ARG PRO THR TYR SEQRES 15 B 228 GLY VAL GLY HIS GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 16 B 228 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 17 B 228 LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL ASN SEQRES 18 B 228 PHE HIS HIS HIS HIS HIS HIS SEQRES 1 C 230 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 C 230 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 C 230 TYR PRO PHE THR SER TYR GLY ILE SER TRP VAL ARG GLN SEQRES 4 C 230 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 C 230 THR TYR ASN GLY ASN THR ASN TYR ALA GLN LYS PHE GLN SEQRES 6 C 230 GLY ARG VAL THR MET THR THR ASP THR SER THR THR THR SEQRES 7 C 230 GLY TYR MET GLU LEU ARG ARG LEU ARG SER ASP ASP THR SEQRES 8 C 230 ALA VAL TYR TYR CYS ALA ARG ASP TYR THR ARG GLY ALA SEQRES 9 C 230 TRP PHE GLY GLU SER LEU ILE GLY GLY PHE ASP ASN TRP SEQRES 10 C 230 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 C 230 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 C 230 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 C 230 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 C 230 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 C 230 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 C 230 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 C 230 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 C 230 ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 D 214 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 D 214 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 D 214 GLN THR VAL SER SER THR SER LEU ALA TRP TYR GLN GLN SEQRES 4 D 214 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 D 214 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 D 214 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 D 214 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 D 214 HIS ASP THR SER LEU THR PHE GLY GLY GLY THR LYS VAL SEQRES 9 D 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 D 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 D 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 D 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 D 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 D 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 D 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 D 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 D 214 PHE ASN ARG GLY GLU CYS HET NAG E 1 14 HET NAG E 2 14 HET BMA E 3 11 HET MAN E 4 11 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET NAG G 1 14 HET NAG G 2 14 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET NAG A 801 14 HET ZN A 802 1 HET NAG A 803 14 HET NAG B 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 NAG 11(C8 H15 N O6) FORMUL 5 BMA 3(C6 H12 O6) FORMUL 5 MAN C6 H12 O6 FORMUL 10 ZN ZN 2+ HELIX 1 AA1 GLU A 22 ASN A 53 1 32 HELIX 2 AA2 THR A 55 GLN A 81 1 27 HELIX 3 AA3 ASN A 90 GLN A 101 1 12 HELIX 4 AA4 SER A 109 SER A 128 1 20 HELIX 5 AA5 PRO A 146 ASN A 154 1 9 HELIX 6 AA6 ASP A 157 ASN A 194 1 38 HELIX 7 AA7 ASP A 198 GLY A 205 1 8 HELIX 8 AA8 GLY A 220 TYR A 252 1 33 HELIX 9 AA9 TRP A 275 THR A 282 5 8 HELIX 10 AB1 VAL A 293 GLN A 300 1 8 HELIX 11 AB2 ASP A 303 VAL A 318 1 16 HELIX 12 AB3 THR A 324 SER A 331 1 8 HELIX 13 AB4 THR A 365 TYR A 385 1 21 HELIX 14 AB5 PRO A 389 ARG A 393 5 5 HELIX 15 AB6 GLY A 399 ALA A 413 1 15 HELIX 16 AB7 THR A 414 ILE A 421 1 8 HELIX 17 AB8 ASP A 431 ILE A 446 1 16 HELIX 18 AB9 GLY A 448 LYS A 465 1 18 HELIX 19 AC1 PRO A 469 ASP A 471 5 3 HELIX 20 AC2 GLN A 472 VAL A 485 1 14 HELIX 21 AC3 LEU A 503 ASN A 508 1 6 HELIX 22 AC4 ILE A 513 ALA A 533 1 21 HELIX 23 AC5 SER A 547 ARG A 559 1 13 HELIX 24 AC6 PRO A 565 GLY A 575 1 11 HELIX 25 AC7 VAL A 581 PHE A 588 1 8 HELIX 26 AC8 GLU A 589 ASN A 599 1 11 HELIX 27 AC9 TYR B 365 ASN B 370 1 6 HELIX 28 AD1 SER B 383 LEU B 387 5 5 HELIX 29 AD2 GLU B 406 ILE B 410 5 5 HELIX 30 AD3 GLY B 416 TYR B 421 1 6 HELIX 31 AD4 PRO C 28 SER C 31 5 4 HELIX 32 AD5 ARG C 87 THR C 91 5 5 HELIX 33 AD6 GLU D 80 PHE D 84 5 5 HELIX 34 AD7 SER D 121 LYS D 126 1 6 HELIX 35 AD8 SER D 182 HIS D 189 1 8 SHEET 1 AA1 2 VAL A 132 CYS A 133 0 SHEET 2 AA1 2 CYS A 141 LEU A 142 -1 O LEU A 142 N VAL A 132 SHEET 1 AA2 2 ASP A 350 GLY A 352 0 SHEET 2 AA2 2 ASP A 355 PHE A 356 -1 O ASP A 355 N GLY A 352 SHEET 1 AA3 5 ASN B 354 ILE B 358 0 SHEET 2 AA3 5 VAL B 395 VAL B 401 -1 O VAL B 395 N ILE B 358 SHEET 3 AA3 5 ARG B 509 SER B 514 -1 O VAL B 512 N ASP B 398 SHEET 4 AA3 5 GLY B 431 VAL B 433 -1 N CYS B 432 O LEU B 513 SHEET 5 AA3 5 LYS B 378 TYR B 380 -1 N TYR B 380 O GLY B 431 SHEET 1 AA4 2 TRP B 452 ARG B 454 0 SHEET 2 AA4 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA5 4 GLN C 3 GLN C 6 0 SHEET 2 AA5 4 VAL C 18 SER C 25 -1 O LYS C 23 N VAL C 5 SHEET 3 AA5 4 THR C 78 LEU C 83 -1 O GLY C 79 N CYS C 22 SHEET 4 AA5 4 VAL C 68 THR C 69 -1 N THR C 69 O GLU C 82 SHEET 1 AA6 4 GLN C 3 GLN C 6 0 SHEET 2 AA6 4 VAL C 18 SER C 25 -1 O LYS C 23 N VAL C 5 SHEET 3 AA6 4 THR C 78 LEU C 83 -1 O GLY C 79 N CYS C 22 SHEET 4 AA6 4 THR C 72 ASP C 73 -1 N ASP C 73 O THR C 78 SHEET 1 AA7 5 THR C 58 TYR C 60 0 SHEET 2 AA7 5 LEU C 45 SER C 52 -1 N TRP C 50 O ASN C 59 SHEET 3 AA7 5 GLY C 33 GLN C 39 -1 N ILE C 34 O ILE C 51 SHEET 4 AA7 5 ALA C 92 ARG C 98 -1 O VAL C 93 N GLN C 39 SHEET 5 AA7 5 THR C 121 VAL C 123 -1 O THR C 121 N TYR C 94 SHEET 1 AA8 4 SER C 134 LEU C 138 0 SHEET 2 AA8 4 ALA C 150 LYS C 157 -1 O LEU C 155 N PHE C 136 SHEET 3 AA8 4 TYR C 190 VAL C 198 -1 O VAL C 196 N LEU C 152 SHEET 4 AA8 4 VAL C 177 THR C 179 -1 N HIS C 178 O VAL C 195 SHEET 1 AA9 4 SER C 134 LEU C 138 0 SHEET 2 AA9 4 ALA C 150 LYS C 157 -1 O LEU C 155 N PHE C 136 SHEET 3 AA9 4 TYR C 190 VAL C 198 -1 O VAL C 196 N LEU C 152 SHEET 4 AA9 4 VAL C 183 LEU C 184 -1 N VAL C 183 O SER C 191 SHEET 1 AB1 3 VAL C 166 TRP C 168 0 SHEET 2 AB1 3 TYR C 208 VAL C 212 -1 O ASN C 211 N SER C 167 SHEET 3 AB1 3 LYS C 224 VAL C 225 -1 O VAL C 225 N TYR C 208 SHEET 1 AB2 6 THR D 10 LEU D 13 0 SHEET 2 AB2 6 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 AB2 6 VAL D 86 GLN D 91 -1 N TYR D 87 O THR D 102 SHEET 4 AB2 6 LEU D 34 GLN D 39 -1 N GLN D 39 O VAL D 86 SHEET 5 AB2 6 PRO D 45 TYR D 50 -1 O ILE D 49 N TRP D 36 SHEET 6 AB2 6 SER D 54 ARG D 55 -1 O SER D 54 N TYR D 50 SHEET 1 AB3 4 THR D 10 LEU D 13 0 SHEET 2 AB3 4 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 AB3 4 VAL D 86 GLN D 91 -1 N TYR D 87 O THR D 102 SHEET 4 AB3 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 91 SHEET 1 AB4 2 ALA D 19 VAL D 29 0 SHEET 2 AB4 2 PHE D 63 ILE D 76 -1 O GLY D 69 N VAL D 29 SHEET 1 AB5 3 ALA D 130 PHE D 139 0 SHEET 2 AB5 3 TYR D 173 LEU D 181 -1 O SER D 177 N CYS D 134 SHEET 3 AB5 3 GLN D 160 VAL D 163 -1 N SER D 162 O SER D 176 SHEET 1 AB6 3 ALA D 153 LEU D 154 0 SHEET 2 AB6 3 ALA D 144 VAL D 150 -1 N VAL D 150 O ALA D 153 SHEET 3 AB6 3 TYR D 192 HIS D 198 -1 O GLU D 195 N GLN D 147 SSBOND 1 CYS A 133 CYS A 141 1555 1555 2.03 SSBOND 2 CYS A 344 CYS A 361 1555 1555 2.03 SSBOND 3 CYS A 530 CYS A 542 1555 1555 2.03 SSBOND 4 CYS B 336 CYS B 361 1555 1555 2.04 SSBOND 5 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 6 CYS B 480 CYS B 488 1555 1555 2.03 SSBOND 7 CYS C 22 CYS C 96 1555 1555 2.03 SSBOND 8 CYS C 154 CYS C 210 1555 1555 2.03 SSBOND 9 CYS D 23 CYS D 89 1555 1555 2.03 SSBOND 10 CYS D 134 CYS D 194 1555 1555 2.02 LINK ND2 ASN A 53 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN A 90 C1 NAG F 1 1555 1555 1.45 LINK ND2 ASN A 103 C1 NAG A 801 1555 1555 1.44 LINK ND2 ASN A 322 C1 NAG G 1 1555 1555 1.45 LINK ND2 ASN A 546 C1 NAG A 803 1555 1555 1.46 LINK ND2 ASN B 343 C1 NAG H 1 1555 1555 1.44 LINK ND2 ASN B 354 C1 NAG B 601 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.40 LINK O4 NAG E 2 C1 BMA E 3 1555 1555 1.39 LINK O3 BMA E 3 C1 MAN E 4 1555 1555 1.39 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.40 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.39 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.39 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.43 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 LINK NE2 HIS A 374 ZN ZN A 802 1555 1555 2.33 LINK NE2 HIS A 378 ZN ZN A 802 1555 1555 2.27 LINK OE1 GLU A 402 ZN ZN A 802 1555 1555 2.21 LINK OE2 GLU A 402 ZN ZN A 802 1555 1555 2.58 CISPEP 1 GLU A 145 PRO A 146 0 -4.26 CISPEP 2 PHE C 160 PRO C 161 0 -5.60 CISPEP 3 SER D 7 PRO D 8 0 -1.30 CISPEP 4 TYR D 140 PRO D 141 0 0.23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000