HEADER TRANSFERASE 05-FEB-24 8Y7W TITLE THYMIDINE KINASE FROM STAPHYLOCOCCUS AUREUS(COL STRAIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS COL; SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 GENE: TDK, SACOL2111; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NATIVE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ASHRAF,R.K.PAL,M.I.HASSAN REVDAT 2 04-MAR-26 8Y7W 1 JRNL REVDAT 1 12-FEB-25 8Y7W 0 JRNL AUTH A.ASHRAF,R.K.PAL,M.I.HASSAN JRNL TITL CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM THE MULTI-DRUG JRNL TITL 2 RESISTANT COL STRAIN OF STAPHYLOCOCCUS AUREUS. JRNL REF BIOCHIM BIOPHYS ACTA V.1873 41071 2025 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 40189173 JRNL DOI 10.1016/J.BBAPAP.2025.141071 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.14 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 10875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 560 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 703 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1348 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 64 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -1.97000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.124 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.939 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1383 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1325 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1872 ; 1.912 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3058 ; 1.500 ; 1.581 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 181 ; 7.299 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 67 ;33.453 ;22.090 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 242 ;14.977 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;20.486 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 191 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1567 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 293 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 718 ; 3.349 ; 4.072 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 717 ; 3.352 ; 4.064 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 895 ; 4.980 ; 6.068 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 896 ; 4.977 ; 6.077 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 665 ; 3.801 ; 4.274 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 661 ; 3.809 ; 4.281 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 968 ; 5.897 ; 6.300 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6110 ; 9.205 ;74.388 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6071 ; 9.209 ;74.425 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 194 REMARK 3 RESIDUE RANGE : A 301 A 303 REMARK 3 RESIDUE RANGE : A 401 A 464 REMARK 3 ORIGIN FOR THE GROUP (A): 36.008 13.854 12.557 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.0431 REMARK 3 T33: 0.0330 T12: -0.0315 REMARK 3 T13: -0.0337 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.8087 L22: 0.1333 REMARK 3 L33: 1.3411 L12: -0.2664 REMARK 3 L13: -0.3725 L23: -0.0050 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0394 S13: -0.0358 REMARK 3 S21: 0.0618 S22: -0.0479 S23: -0.0122 REMARK 3 S31: -0.2545 S32: -0.0085 S33: 0.0484 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8Y7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11525 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 21.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6M AMMONIUM SULFATE 0.1M MES 10% V/V REMARK 280 1,4-DIOXANE, VAPOR DIFFUSION, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z+1/2 REMARK 290 4555 Y,-X,Z+1/2 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z+1/2 REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.79500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.79500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.79500 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.79500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -192.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 71.73600 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 71.73600 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 451 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 456 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 TYR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 TYR A 5 REMARK 465 HIS A 6 REMARK 465 ASP A 47 REMARK 465 ASP A 48 REMARK 465 ARG A 49 REMARK 465 TYR A 50 REMARK 465 HIS A 51 REMARK 465 LYS A 52 REMARK 465 GLU A 53 REMARK 465 LYS A 54 REMARK 465 VAL A 55 REMARK 465 ASN A 195 REMARK 465 LYS A 196 REMARK 465 GLU A 197 REMARK 465 GLU A 198 REMARK 465 LEU A 199 REMARK 465 HIS A 200 REMARK 465 HIS A 201 REMARK 465 HIS A 202 REMARK 465 HIS A 203 REMARK 465 HIS A 204 REMARK 465 HIS A 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 46 CG1 CG2 CD1 REMARK 470 VAL A 56 CG1 CG2 REMARK 470 SER A 57 OG REMARK 470 HIS A 58 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 59 CG OD1 ND2 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 ILE A 171 CG1 CG2 CD1 REMARK 470 ASN A 194 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 12 CB - CA - C ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 58 117.83 -160.89 REMARK 500 ALA A 143 -159.68 -90.96 REMARK 500 VAL A 147 -65.33 -94.45 REMARK 500 ALA A 164 153.56 -46.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 145 SG REMARK 620 2 CYS A 148 SG 105.9 REMARK 620 3 CYS A 183 SG 112.8 121.5 REMARK 620 4 HIS A 186 ND1 115.9 114.5 85.8 REMARK 620 N 1 2 3 DBREF 8Y7W A 1 199 UNP Q5HE81 KITH_STAAC 1 199 SEQADV 8Y7W HIS A 200 UNP Q5HE81 EXPRESSION TAG SEQADV 8Y7W HIS A 201 UNP Q5HE81 EXPRESSION TAG SEQADV 8Y7W HIS A 202 UNP Q5HE81 EXPRESSION TAG SEQADV 8Y7W HIS A 203 UNP Q5HE81 EXPRESSION TAG SEQADV 8Y7W HIS A 204 UNP Q5HE81 EXPRESSION TAG SEQADV 8Y7W HIS A 205 UNP Q5HE81 EXPRESSION TAG SEQRES 1 A 205 MET TYR GLU THR TYR HIS SER GLY TRP ILE GLU CYS ILE SEQRES 2 A 205 THR GLY SER MET PHE SER GLY LYS SER GLU GLU LEU ILE SEQRES 3 A 205 ARG ARG LEU ARG ARG GLY ILE TYR ALA LYS GLN LYS VAL SEQRES 4 A 205 VAL VAL PHE LYS PRO ALA ILE ASP ASP ARG TYR HIS LYS SEQRES 5 A 205 GLU LYS VAL VAL SER HIS ASN GLY ASN ALA ILE GLU ALA SEQRES 6 A 205 ILE ASN ILE SER LYS ALA SER GLU ILE MET THR HIS ASP SEQRES 7 A 205 LEU THR ASN VAL ASP VAL ILE GLY ILE ASP GLU VAL GLN SEQRES 8 A 205 PHE PHE ASP ASP GLU ILE VAL SER ILE VAL GLU LYS LEU SEQRES 9 A 205 SER ALA ASP GLY HIS ARG VAL ILE VAL ALA GLY LEU ASP SEQRES 10 A 205 MET ASP PHE ARG GLY GLU PRO PHE GLU PRO MET PRO LYS SEQRES 11 A 205 LEU MET ALA VAL SER GLU GLN VAL THR LYS LEU GLN ALA SEQRES 12 A 205 VAL CYS ALA VAL CYS GLY SER SER SER SER ARG THR GLN SEQRES 13 A 205 ARG LEU ILE ASN GLY LYS PRO ALA LYS ILE ASP ASP PRO SEQRES 14 A 205 ILE ILE LEU VAL GLY ALA ASN GLU SER TYR GLU PRO ARG SEQRES 15 A 205 CYS ARG ALA HIS HIS ILE VAL ALA PRO SER ASP ASN ASN SEQRES 16 A 205 LYS GLU GLU LEU HIS HIS HIS HIS HIS HIS HET ZN A 301 1 HET SO4 A 302 5 HET CL A 303 1 HET CL A 304 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 2 ZN ZN 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *64(H2 O) HELIX 1 AA1 GLY A 20 ALA A 35 1 16 HELIX 2 AA2 LYS A 70 HIS A 77 5 8 HELIX 3 AA3 GLU A 89 ASP A 94 5 6 HELIX 4 AA4 ASP A 95 ASP A 107 1 13 HELIX 5 AA5 PRO A 127 SER A 135 1 9 SHEET 1 AA1 6 GLU A 64 ILE A 68 0 SHEET 2 AA1 6 VAL A 39 PRO A 44 1 N VAL A 41 O ILE A 66 SHEET 3 AA1 6 VAL A 84 ILE A 87 1 O GLY A 86 N VAL A 40 SHEET 4 AA1 6 ARG A 110 ALA A 114 1 O ALA A 114 N ILE A 87 SHEET 5 AA1 6 TRP A 9 THR A 14 1 N ILE A 13 O VAL A 113 SHEET 6 AA1 6 GLN A 137 LYS A 140 1 O THR A 139 N THR A 14 SHEET 1 AA2 2 SER A 57 HIS A 58 0 SHEET 2 AA2 2 ASN A 61 ALA A 62 -1 O ASN A 61 N HIS A 58 SHEET 1 AA3 3 LYS A 162 PRO A 163 0 SHEET 2 AA3 3 ARG A 154 ILE A 159 -1 N ILE A 159 O LYS A 162 SHEET 3 AA3 3 GLU A 177 ARG A 182 -1 O SER A 178 N LEU A 158 LINK SG CYS A 145 ZN ZN A 301 1555 1555 2.37 LINK SG CYS A 148 ZN ZN A 301 1555 1555 2.25 LINK SG CYS A 183 ZN ZN A 301 1555 1555 2.25 LINK ND1 HIS A 186 ZN ZN A 301 1555 1555 1.98 CISPEP 1 GLU A 126 PRO A 127 0 0.68 CRYST1 71.736 71.736 95.590 90.00 90.00 90.00 P 42 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013940 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010461 0.00000 CONECT 1000 1358 CONECT 1018 1358 CONECT 1274 1358 CONECT 1297 1358 CONECT 1358 1000 1018 1274 1297 CONECT 1359 1360 1361 1362 1363 CONECT 1360 1359 CONECT 1361 1359 CONECT 1362 1359 CONECT 1363 1359 MASTER 396 0 4 5 11 0 0 6 1420 1 10 16 END