HEADER HYDROLASE 07-FEB-24 8YA1 TITLE HEN EGG WHITE LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME C; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 5 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031 KEYWDS LYSOZYME, HEN EGG WHITE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.ZHANG,Q.XU,W.W.WANG,H.ZHOU REVDAT 1 28-FEB-24 8YA1 0 JRNL AUTH C.Y.ZHANG,Q.XU,W.W.WANG,M.LIANG,L.YU,M.J.LI,Z.M.ZHU, JRNL AUTH 2 L.Q.HUANG,Q.H.LI,F.YU,Y.Z.WANG,H.ZHOU,Q.S.WANG JRNL TITL CRYSTALLOGRAPHIC DATA COLLECTION USING A MULTILAYER JRNL TITL 2 MONOCHROMATOR ON AN UNDULATOR BEAMLINE AT SSRF JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.57 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.57 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16564 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1300 - 3.5900 1.00 1361 151 0.1879 0.1809 REMARK 3 2 3.5900 - 2.8500 1.00 1280 143 0.1779 0.1874 REMARK 3 3 2.8500 - 2.4900 1.00 1254 139 0.2044 0.2317 REMARK 3 4 2.4900 - 2.2600 1.00 1251 139 0.1872 0.2248 REMARK 3 5 2.2600 - 2.1000 1.00 1236 138 0.1902 0.2604 REMARK 3 6 2.1000 - 1.9800 1.00 1228 136 0.2009 0.2324 REMARK 3 7 1.9700 - 1.8800 1.00 1228 137 0.1953 0.2229 REMARK 3 8 1.8800 - 1.7900 1.00 1222 135 0.1997 0.2428 REMARK 3 9 1.7900 - 1.7300 1.00 1226 136 0.2093 0.2308 REMARK 3 10 1.7300 - 1.6700 1.00 1192 134 0.2094 0.2320 REMARK 3 11 1.6700 - 1.6100 1.00 1240 137 0.2055 0.2778 REMARK 3 12 1.6100 - 1.5700 0.98 1189 132 0.2369 0.2765 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1021 REMARK 3 ANGLE : 1.114 1381 REMARK 3 CHIRALITY : 0.064 144 REMARK 3 PLANARITY : 0.010 181 REMARK 3 DIHEDRAL : 6.045 143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 14 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5033 -6.7838 -18.3190 REMARK 3 T TENSOR REMARK 3 T11: 0.2594 T22: 0.2054 REMARK 3 T33: 0.2244 T12: 0.0378 REMARK 3 T13: 0.0073 T23: -0.0501 REMARK 3 L TENSOR REMARK 3 L11: 2.9843 L22: 2.2674 REMARK 3 L33: 3.6355 L12: -0.3847 REMARK 3 L13: 0.3616 L23: -0.6619 REMARK 3 S TENSOR REMARK 3 S11: 0.0956 S12: 0.1626 S13: -0.3824 REMARK 3 S21: -0.3187 S22: -0.0805 S23: -0.0872 REMARK 3 S31: 0.3156 S32: 0.4635 S33: 0.0185 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.4831 -11.4861 -7.1900 REMARK 3 T TENSOR REMARK 3 T11: 0.3246 T22: 0.1484 REMARK 3 T33: 0.2491 T12: -0.0168 REMARK 3 T13: -0.0315 T23: 0.0186 REMARK 3 L TENSOR REMARK 3 L11: 4.7022 L22: 1.8289 REMARK 3 L33: 1.0545 L12: -0.0890 REMARK 3 L13: 1.8694 L23: -0.3530 REMARK 3 S TENSOR REMARK 3 S11: 0.1900 S12: -0.1555 S13: -0.7586 REMARK 3 S21: -0.0306 S22: -0.0697 S23: 0.2310 REMARK 3 S31: 0.4983 S32: 0.1005 S33: -0.2616 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.7358 0.2952 -14.9281 REMARK 3 T TENSOR REMARK 3 T11: 0.1792 T22: 0.1538 REMARK 3 T33: 0.1790 T12: -0.0095 REMARK 3 T13: -0.0038 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.9060 L22: 0.6453 REMARK 3 L33: 0.4627 L12: 0.5833 REMARK 3 L13: -0.1787 L23: 0.0289 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.0306 S13: 0.1085 REMARK 3 S21: -0.0594 S22: 0.0483 S23: 0.0847 REMARK 3 S31: -0.0157 S32: -0.0828 S33: 0.0050 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.5215 14.4262 -4.2686 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.2324 REMARK 3 T33: 0.2587 T12: 0.0122 REMARK 3 T13: 0.0575 T23: -0.0493 REMARK 3 L TENSOR REMARK 3 L11: 2.6247 L22: 2.8896 REMARK 3 L33: 5.9053 L12: 0.1789 REMARK 3 L13: -0.4998 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.4015 S12: -0.1684 S13: 0.8150 REMARK 3 S21: 0.1282 S22: 0.1850 S23: -0.1040 REMARK 3 S31: -0.3685 S32: -0.4126 S33: -0.3273 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.4942 6.9325 -2.1094 REMARK 3 T TENSOR REMARK 3 T11: 0.2119 T22: 0.2039 REMARK 3 T33: 0.1716 T12: -0.0292 REMARK 3 T13: 0.0103 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.9618 L22: 2.4962 REMARK 3 L33: 1.1568 L12: 0.6086 REMARK 3 L13: 0.7194 L23: -0.8280 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: -0.2782 S13: 0.1029 REMARK 3 S21: 0.2211 S22: -0.1812 S23: 0.0579 REMARK 3 S31: 0.0076 S32: -0.0721 S33: 0.1440 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 78 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7626 4.9122 4.9601 REMARK 3 T TENSOR REMARK 3 T11: 0.3452 T22: 0.3022 REMARK 3 T33: 0.2250 T12: -0.0373 REMARK 3 T13: -0.0444 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.0635 L22: 5.5991 REMARK 3 L33: 0.1923 L12: 0.4612 REMARK 3 L13: -0.0319 L23: 0.5006 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.3705 S13: -0.0442 REMARK 3 S21: 0.7549 S22: -0.0940 S23: -0.3431 REMARK 3 S31: 0.0737 S32: 0.0467 S33: 0.2415 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4468 -2.0486 -5.8104 REMARK 3 T TENSOR REMARK 3 T11: 0.2139 T22: 0.1881 REMARK 3 T33: 0.2316 T12: 0.0116 REMARK 3 T13: 0.0028 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 1.0301 L22: 1.2694 REMARK 3 L33: 0.3605 L12: 0.7866 REMARK 3 L13: 0.1702 L23: -0.1005 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: -0.0236 S13: -0.2762 REMARK 3 S21: -0.1094 S22: -0.0959 S23: -0.2617 REMARK 3 S31: 0.1646 S32: 0.2341 S33: 0.0282 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 100 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.3649 0.0872 -5.2347 REMARK 3 T TENSOR REMARK 3 T11: 0.2017 T22: 0.1544 REMARK 3 T33: 0.1823 T12: -0.0064 REMARK 3 T13: 0.0002 T23: -0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.0518 L22: 2.2964 REMARK 3 L33: 4.5221 L12: 0.1669 REMARK 3 L13: 1.3788 L23: -0.5324 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: -0.3016 S13: 0.2201 REMARK 3 S21: 0.2951 S22: -0.0657 S23: 0.0736 REMARK 3 S31: -0.6679 S32: -0.2938 S33: -0.0447 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 115 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.5938 -8.8453 -19.5718 REMARK 3 T TENSOR REMARK 3 T11: 0.3968 T22: 0.2382 REMARK 3 T33: 0.2781 T12: -0.0201 REMARK 3 T13: 0.0015 T23: -0.0530 REMARK 3 L TENSOR REMARK 3 L11: 4.0958 L22: 2.8558 REMARK 3 L33: 4.3992 L12: -1.2480 REMARK 3 L13: -1.7859 L23: 1.9352 REMARK 3 S TENSOR REMARK 3 S11: -0.1697 S12: 0.3526 S13: -0.6427 REMARK 3 S21: -0.1224 S22: -0.0399 S23: 0.0043 REMARK 3 S31: 0.8598 S32: -0.1545 S33: -0.0416 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045248. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17UM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.924 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16608 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.570 REMARK 200 RESOLUTION RANGE LOW (A) : 39.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.80 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.57 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 18.20 REMARK 200 R MERGE FOR SHELL (I) : 0.63900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 6% SODIUM REMARK 280 CHLORIDE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.40400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.12900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.12900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.60600 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.12900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.12900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 9.20200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.12900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.12900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 27.60600 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.12900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.12900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 9.20200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 18.40400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 258 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 282 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 335 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 319 O HOH A 331 1.89 REMARK 500 O ARG A 128 O HOH A 201 2.05 REMARK 500 O HOH A 284 O HOH A 322 2.06 REMARK 500 SG CYS A 6 O HOH A 246 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 301 O HOH A 301 8554 1.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YA1 A 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 A 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 A 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 A 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 A 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 A 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 A 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 A 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 A 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 A 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 2 HOH *138(H2 O) HELIX 1 AA1 GLY A 4 HIS A 15 1 12 HELIX 2 AA2 ASN A 19 TYR A 23 5 5 HELIX 3 AA3 SER A 24 ASN A 37 1 14 HELIX 4 AA4 PRO A 79 SER A 85 5 7 HELIX 5 AA5 ILE A 88 ASP A 101 1 14 HELIX 6 AA6 ASN A 103 ALA A 107 5 5 HELIX 7 AA7 TRP A 108 CYS A 115 1 8 HELIX 8 AA8 ASP A 119 ARG A 125 5 7 SHEET 1 AA1 3 THR A 43 ARG A 45 0 SHEET 2 AA1 3 THR A 51 TYR A 53 -1 O ASP A 52 N ASN A 44 SHEET 3 AA1 3 ILE A 58 ASN A 59 -1 O ILE A 58 N TYR A 53 SSBOND 1 CYS A 30 CYS A 115 1555 1555 2.06 SSBOND 2 CYS A 64 CYS A 80 1555 1555 2.04 SSBOND 3 CYS A 76 CYS A 94 1555 1555 2.04 CRYST1 78.258 78.258 36.808 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012778 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027168 0.00000