HEADER HYDROLASE 07-FEB-24 8YA6 TITLE ENDO-1,3-FUCANASE FUN168A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,3-FUCANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: WENYINGZHUANGIA FUCANILYTICA; SOURCE 3 ORGANISM_TAXID: 1790137; SOURCE 4 GENE: AXE80_10060; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ENDO-1, 3-FUCANASE, GH168, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.N.CHEN,Y.G.CHANG REVDAT 1 28-FEB-24 8YA6 0 JRNL AUTH G.N.CHEN,Y.G.CHANG JRNL TITL STRUCUTRE OF ENDO-1,3-FUCANASE FUN168A AT 1.92 ANGSTROMS JRNL TITL 2 RESOLUTION. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.410 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 32481 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.160 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 10.0000 - 4.6200 0.96 2319 153 0.2199 0.2253 REMARK 3 2 4.6200 - 3.6700 0.99 2284 149 0.1900 0.2011 REMARK 3 3 3.6700 - 3.2100 0.98 2235 147 0.1985 0.1985 REMARK 3 4 3.2100 - 2.9100 0.96 2155 141 0.2233 0.2266 REMARK 3 5 2.9100 - 2.7100 0.97 2175 143 0.2270 0.2479 REMARK 3 6 2.7100 - 2.5500 0.97 2176 143 0.2158 0.2158 REMARK 3 7 2.5500 - 2.4200 0.97 2178 143 0.2286 0.2452 REMARK 3 8 2.4200 - 2.3100 0.96 2160 141 0.2181 0.2331 REMARK 3 9 2.3100 - 2.2200 0.95 2127 140 0.2214 0.2480 REMARK 3 10 2.2200 - 2.1500 0.96 2103 138 0.2105 0.2427 REMARK 3 11 2.1500 - 2.0800 0.96 2173 143 0.2135 0.2382 REMARK 3 12 2.0800 - 2.0200 0.96 2148 140 0.2213 0.2617 REMARK 3 13 2.0200 - 1.9700 0.96 2121 140 0.2220 0.2672 REMARK 3 14 1.9700 - 1.9200 0.96 2127 139 0.2449 0.2871 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.028 NULL REMARK 3 ANGLE : 1.857 4039 REMARK 3 CHIRALITY : 0.057 418 REMARK 3 PLANARITY : 0.009 519 REMARK 3 DIHEDRAL : 6.603 393 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32524 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 41.960 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.15300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE+0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 6.5+24% W/V PEG 8000, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.72150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 119.72150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.85150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.61000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.85150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.61000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 119.72150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.85150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.61000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.72150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.85150 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 33.61000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 579 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 714 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1099 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 GLY A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 SER A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 LEU A -1 REMARK 465 VAL A 0 REMARK 465 PRO A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 MET A 6 REMARK 465 ALA A 7 REMARK 465 SER A 8 REMARK 465 MET A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 GLN A 13 REMARK 465 GLN A 14 REMARK 465 MET A 15 REMARK 465 GLY A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 CYS A 20 REMARK 465 SER A 21 REMARK 465 THR A 22 REMARK 465 THR A 23 REMARK 465 LYS A 24 REMARK 465 THR A 25 REMARK 465 HIS A 26 REMARK 465 THR A 27 REMARK 465 ASN A 28 REMARK 465 THR A 29 REMARK 465 SER A 30 REMARK 465 THR A 31 REMARK 465 ILE A 32 REMARK 465 VAL A 33 REMARK 465 LYS A 34 REMARK 465 ASN A 35 REMARK 465 GLU A 36 REMARK 465 LYS A 37 REMARK 465 ILE A 38 REMARK 465 LYS A 408 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 40 CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 41 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 114 CG OD1 ND2 REMARK 470 ASN A 171 CG OD1 ND2 REMARK 470 GLN A 193 CG CD OE1 NE2 REMARK 470 GLU A 228 CG CD OE1 OE2 REMARK 470 ILE A 237 CG1 CG2 CD1 REMARK 470 LYS A 252 CG CD CE NZ REMARK 470 MET A 292 CG SD CE REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 GLN A 308 CG CD OE1 NE2 REMARK 470 THR A 309 CB OG1 CG2 REMARK 470 LEU A 310 CG CD1 CD2 REMARK 470 ILE A 311 CG1 CG2 CD1 REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 SER A 314 OG REMARK 470 ARG A 315 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 SER A 318 OG REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 685 O HOH A 829 1.98 REMARK 500 O HOH A 678 O HOH A 778 2.06 REMARK 500 O HOH A 513 O HOH A 785 2.14 REMARK 500 CB ALA A 285 O HOH A 829 2.15 REMARK 500 O HOH A 1032 O HOH A 1053 2.16 REMARK 500 OE1 GLN A 218 O HOH A 502 2.17 REMARK 500 O HOH A 1079 O HOH A 1080 2.17 REMARK 500 O HOH A 781 O HOH A 926 2.17 REMARK 500 O HOH A 1103 O HOH A 1107 2.17 REMARK 500 O HOH A 897 O HOH A 997 2.18 REMARK 500 O HOH A 875 O HOH A 964 2.19 REMARK 500 OD1 ASP A 197 O HOH A 503 2.19 REMARK 500 O HOH A 716 O HOH A 907 2.19 REMARK 500 O HOH A 676 O HOH A 854 2.19 REMARK 500 O HOH A 649 O HOH A 873 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 77 CB PRO A 77 CG -0.529 REMARK 500 PRO A 77 CG PRO A 77 CD -0.316 REMARK 500 PRO A 366 CD PRO A 366 N 1.291 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 77 CA - N - CD ANGL. DEV. = -14.4 DEGREES REMARK 500 PRO A 77 CA - CB - CG ANGL. DEV. = -33.3 DEGREES REMARK 500 PRO A 77 CB - CG - CD ANGL. DEV. = 73.5 DEGREES REMARK 500 PRO A 77 N - CD - CG ANGL. DEV. = -25.1 DEGREES REMARK 500 PRO A 366 C - N - CD ANGL. DEV. = 15.8 DEGREES REMARK 500 PRO A 366 CA - N - CD ANGL. DEV. = -16.0 DEGREES REMARK 500 PRO A 366 N - CD - CG ANGL. DEV. = -39.3 DEGREES REMARK 500 LEU A 377 CB - CG - CD1 ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 102 -45.17 74.25 REMARK 500 ALA A 131 -56.93 -122.60 REMARK 500 PRO A 135 46.55 -96.05 REMARK 500 GLN A 207 120.50 84.97 REMARK 500 ARG A 215 55.73 -147.12 REMARK 500 SER A 307 39.66 -89.20 REMARK 500 GLN A 308 -91.50 -66.90 REMARK 500 THR A 309 62.59 -104.53 REMARK 500 LYS A 312 -137.08 47.36 REMARK 500 TRP A 348 29.30 -141.13 REMARK 500 LYS A 371 50.36 -94.28 REMARK 500 ASN A 380 -16.37 74.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 378 GLU A 379 138.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1094 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH A1095 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH A1096 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1097 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A1098 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A1099 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1100 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1101 DISTANCE = 6.69 ANGSTROMS REMARK 525 HOH A1102 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A1103 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1104 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH A1105 DISTANCE = 6.93 ANGSTROMS REMARK 525 HOH A1106 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A1107 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH A1108 DISTANCE = 7.19 ANGSTROMS REMARK 525 HOH A1109 DISTANCE = 7.20 ANGSTROMS REMARK 525 HOH A1110 DISTANCE = 7.83 ANGSTROMS REMARK 525 HOH A1111 DISTANCE = 7.89 ANGSTROMS REMARK 525 HOH A1112 DISTANCE = 7.91 ANGSTROMS REMARK 525 HOH A1113 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH A1114 DISTANCE = 8.46 ANGSTROMS REMARK 525 HOH A1115 DISTANCE = 8.54 ANGSTROMS REMARK 525 HOH A1116 DISTANCE = 8.87 ANGSTROMS REMARK 525 HOH A1117 DISTANCE = 8.96 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 8.97 ANGSTROMS REMARK 525 HOH A1119 DISTANCE = 8.99 ANGSTROMS REMARK 525 HOH A1120 DISTANCE = 10.06 ANGSTROMS DBREF1 8YA6 A 19 408 UNP A0A1B1Y779_9FLAO DBREF2 8YA6 A A0A1B1Y779 19 408 SEQADV 8YA6 MET A -14 UNP A0A1B1Y77 INITIATING METHIONINE SEQADV 8YA6 GLY A -13 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 SER A -12 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 SER A -11 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 HIS A -10 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 HIS A -9 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 HIS A -8 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 HIS A -7 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 HIS A -6 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 HIS A -5 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 SER A -4 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 SER A -3 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLY A -2 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 LEU A -1 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 VAL A 0 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 PRO A 1 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 ARG A 2 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLY A 3 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 SER A 4 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 HIS A 5 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 MET A 6 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 ALA A 7 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 SER A 8 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 MET A 9 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 THR A 10 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLY A 11 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLY A 12 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLN A 13 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLN A 14 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 MET A 15 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLY A 16 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 ARG A 17 UNP A0A1B1Y77 EXPRESSION TAG SEQADV 8YA6 GLY A 18 UNP A0A1B1Y77 EXPRESSION TAG SEQRES 1 A 423 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 423 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 423 GLY GLN GLN MET GLY ARG GLY SER CYS SER THR THR LYS SEQRES 4 A 423 THR HIS THR ASN THR SER THR ILE VAL LYS ASN GLU LYS SEQRES 5 A 423 ILE ASP PHE TYR VAL SER ASP GLY SER LYS PHE ILE SER SEQRES 6 A 423 GLN ASP PHE TYR PRO LYS PHE SER TRP GLU SER THR PRO SEQRES 7 A 423 GLU TYR ALA MET PHE GLY ASN GLY ALA SER LEU LEU THR SEQRES 8 A 423 PRO LYS GLU VAL GLU LYS ILE ALA ALA LYS THR ASP PHE SEQRES 9 A 423 ILE CYS ILE GLU LYS ASN HIS ALA TYR ARG THR LEU GLU SEQRES 10 A 423 PHE ALA GLU ILE GLY ALA ARG GLU GLU ILE LYS ASN PHE SEQRES 11 A 423 LYS ALA ILE LYS PRO GLU ILE LYS ALA LEU TYR TYR PHE SEQRES 12 A 423 ASN SER ALA TYR ALA TRP PRO PHE THR SER TYR ASN LYS SEQRES 13 A 423 ASN PHE LYS LYS ASN LYS ILE ASP ASP TYR PRO GLU LEU SEQRES 14 A 423 LYS LYS PHE ILE LEU VAL ASP LYS THR THR GLY GLU LEU SEQRES 15 A 423 GLN HIS ARG ASN ASN THR LEU CYS PHE ASP VAL LEU ASN SEQRES 16 A 423 PRO GLU PHE ARG THR TRP TRP VAL LYS THR VAL ALA GLN SEQRES 17 A 423 GLY VAL LYS ASP SER GLY ALA ASP GLY VAL PHE ILE ASP SEQRES 18 A 423 GLN MET HIS GLY PHE VAL TRP LEU ARG SER SER GLN LYS SEQRES 19 A 423 GLU GLU VAL GLU LYS ALA MET GLY GLU MET MET ALA ASN SEQRES 20 A 423 LEU LYS ALA ALA ILE GLY THR ASN LYS ILE LEU LEU GLY SEQRES 21 A 423 ASN ASN ALA SER SER VAL LYS ASP VAL PHE PRO ALA ILE SEQRES 22 A 423 ASP ALA ALA MET PHE GLU HIS TYR ASN ASN LYS LYS LEU SEQRES 23 A 423 SER LYS GLU ASN LEU LEU LYS GLU TRP GLY ASP MET LEU SEQRES 24 A 423 ALA ASN ALA LYS ALA GLY LYS MET SER ILE PHE ARG ILE SEQRES 25 A 423 GLY VAL GLU ALA GLU LYS GLU GLU ALA SER GLN THR LEU SEQRES 26 A 423 ILE LYS GLY SER ARG GLY GLU SER LEU GLU GLU LEU SER SEQRES 27 A 423 LYS GLU ARG LEU GLU TYR TYR GLN ALA CYS PHE LEU ILE SEQRES 28 A 423 GLY ALA GLN PRO TYR SER TYR PHE GLN TYR GLY TRP GLY SEQRES 29 A 423 TRP ARG LEU ASP THR GLY PRO LEU VAL ASP TYR PRO GLU SEQRES 30 A 423 LEU GLN LYS PRO LEU GLY ALA PRO LYS GLY ALA TYR LYS SEQRES 31 A 423 ARG LEU HIS GLU ASN GLY TRP GLU PHE THR ARG GLU PHE SEQRES 32 A 423 GLU HIS ALA SER VAL TRP VAL ASP THR GLU LYS LYS GLU SEQRES 33 A 423 ALA LYS ILE GLU TRP LYS LYS FORMUL 2 HOH *620(H2 O) HELIX 1 AA1 THR A 76 ALA A 85 1 10 HELIX 2 AA2 ALA A 97 GLU A 102 1 6 HELIX 3 AA3 PHE A 103 LYS A 119 1 17 HELIX 4 AA4 LYS A 147 ASP A 150 5 4 HELIX 5 AA5 TYR A 151 LYS A 156 1 6 HELIX 6 AA6 ASN A 180 GLY A 199 1 20 HELIX 7 AA7 PHE A 211 SER A 217 5 7 HELIX 8 AA8 GLN A 218 ILE A 237 1 20 HELIX 9 AA9 VAL A 254 ILE A 258 5 5 HELIX 10 AB1 ASN A 267 SER A 272 1 6 HELIX 11 AB2 SER A 272 ALA A 289 1 18 HELIX 12 AB3 GLU A 300 LYS A 303 5 4 HELIX 13 AB4 ILE A 311 ALA A 338 1 28 HELIX 14 AB5 TYR A 360 LYS A 365 5 6 SHEET 1 AA1 8 ALA A 66 PHE A 68 0 SHEET 2 AA1 8 PHE A 89 ILE A 92 1 O CYS A 91 N ALA A 66 SHEET 3 AA1 8 LYS A 123 ASN A 129 1 O LEU A 125 N ILE A 90 SHEET 4 AA1 8 GLY A 202 ASP A 206 1 O PHE A 204 N TYR A 126 SHEET 5 AA1 8 ILE A 242 ASN A 246 1 O LEU A 244 N ILE A 205 SHEET 6 AA1 8 ALA A 260 PHE A 263 1 O ALA A 260 N GLY A 245 SHEET 7 AA1 8 MET A 292 GLY A 298 1 O ILE A 294 N PHE A 263 SHEET 8 AA1 8 SER A 342 GLY A 347 1 O GLN A 345 N ILE A 297 SHEET 1 AA2 2 HIS A 169 ARG A 170 0 SHEET 2 AA2 2 THR A 173 LEU A 174 -1 O THR A 173 N ARG A 170 SHEET 1 AA3 4 LYS A 375 ARG A 376 0 SHEET 2 AA3 4 GLU A 383 PHE A 388 -1 O THR A 385 N LYS A 375 SHEET 3 AA3 4 ALA A 391 ASP A 396 -1 O ALA A 391 N PHE A 388 SHEET 4 AA3 4 GLU A 401 TRP A 406 -1 O GLU A 405 N SER A 392 CRYST1 53.703 67.220 239.443 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018621 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014877 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004176 0.00000