HEADER VIRAL PROTEIN/INHIBITOR 21-FEB-24 8YDP TITLE CRYSTAL STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF SARS-COV-2 SPIKE TITLE 2 PROTEIN IN COMPLEX WITH CE9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SARS-COV-2 INHIBITING PEPTIDE CE9; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SPIKE PROTEIN S1; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 7 2; SOURCE 8 ORGANISM_TAXID: 2697049; SOURCE 9 GENE: S, 2; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: EXPI293F KEYWDS RBD, VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.NAKAMURA,N.NUMOTO,Y.FUJIYOSHI REVDAT 2 30-JUL-25 8YDP 1 JRNL REVDAT 1 15-JAN-25 8YDP 0 JRNL AUTH S.NAKAMURA,Y.TANIMURA,R.NOMURA,H.SUZUKI,K.NISHIKAWA, JRNL AUTH 2 A.KAMEGAWA,N.NUMOTO,A.TANAKA,S.KAWABATA,S.SAKAGUCHI,A.EMI, JRNL AUTH 3 Y.SUZUKI,Y.FUJIYOSHI JRNL TITL STRUCTURE-GUIDED ENGINEERING OF A MUTATION-TOLERANT JRNL TITL 2 INHIBITOR PEPTIDE AGAINST VARIABLE SARS-COV-2 SPIKES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 122 65122 2025 JRNL REFN ESSN 1091-6490 JRNL PMID 39854234 JRNL DOI 10.1073/PNAS.2413465122 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 25961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.1200 - 4.9600 1.00 2471 133 0.1831 0.2268 REMARK 3 2 4.9500 - 3.9300 1.00 2471 137 0.1697 0.2047 REMARK 3 3 3.9300 - 3.4400 1.00 2438 130 0.1869 0.2510 REMARK 3 4 3.4400 - 3.1200 1.00 2475 135 0.2264 0.2865 REMARK 3 5 3.1200 - 2.9000 1.00 2479 119 0.2565 0.2881 REMARK 3 6 2.9000 - 2.7300 1.00 2469 130 0.2414 0.3496 REMARK 3 7 2.7300 - 2.5900 1.00 2438 138 0.2655 0.3357 REMARK 3 8 2.5900 - 2.4800 1.00 2492 123 0.2845 0.3247 REMARK 3 9 2.4800 - 2.3800 1.00 2457 143 0.3215 0.3646 REMARK 3 10 2.3800 - 2.3000 0.99 2437 146 0.3406 0.3642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.393 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.427 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3952 REMARK 3 ANGLE : 0.418 5347 REMARK 3 CHIRALITY : 0.040 560 REMARK 3 PLANARITY : 0.003 695 REMARK 3 DIHEDRAL : 11.067 1432 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8YDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1300045345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15100 REMARK 200 FOR THE DATA SET : 13.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 10% PEG 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.40333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR B 333 REMARK 465 TYR B 533 REMARK 465 PHE B 534 REMARK 465 GLN B 535 REMARK 465 GLY B 536 REMARK 465 SER B 537 REMARK 465 HIS B 538 REMARK 465 HIS B 539 REMARK 465 HIS B 540 REMARK 465 HIS B 541 REMARK 465 HIS B 542 REMARK 465 HIS B 543 REMARK 465 HIS B 544 REMARK 465 HIS B 545 REMARK 465 HIS B 546 REMARK 465 HIS B 547 REMARK 465 GLY B 548 REMARK 465 LEU B 549 REMARK 465 ASN B 550 REMARK 465 ASP B 551 REMARK 465 ILE B 552 REMARK 465 PHE B 553 REMARK 465 GLU B 554 REMARK 465 ALA B 555 REMARK 465 GLN B 556 REMARK 465 LYS B 557 REMARK 465 ILE B 558 REMARK 465 GLU B 559 REMARK 465 TRP B 560 REMARK 465 HIS B 561 REMARK 465 GLU B 562 REMARK 465 THR D 333 REMARK 465 ASN D 531 REMARK 465 LEU D 532 REMARK 465 TYR D 533 REMARK 465 PHE D 534 REMARK 465 GLN D 535 REMARK 465 GLY D 536 REMARK 465 SER D 537 REMARK 465 HIS D 538 REMARK 465 HIS D 539 REMARK 465 HIS D 540 REMARK 465 HIS D 541 REMARK 465 HIS D 542 REMARK 465 HIS D 543 REMARK 465 HIS D 544 REMARK 465 HIS D 545 REMARK 465 HIS D 546 REMARK 465 HIS D 547 REMARK 465 GLY D 548 REMARK 465 LEU D 549 REMARK 465 ASN D 550 REMARK 465 ASP D 551 REMARK 465 ILE D 552 REMARK 465 PHE D 553 REMARK 465 GLU D 554 REMARK 465 ALA D 555 REMARK 465 GLN D 556 REMARK 465 LYS D 557 REMARK 465 ILE D 558 REMARK 465 GLU D 559 REMARK 465 TRP D 560 REMARK 465 HIS D 561 REMARK 465 GLU D 562 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 532 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 37 46.37 -96.70 REMARK 500 ALA B 352 53.91 -110.31 REMARK 500 SER B 371 90.39 -62.74 REMARK 500 SER B 373 90.49 57.01 REMARK 500 PHE B 377 75.20 -159.26 REMARK 500 ASN B 422 -53.75 -123.90 REMARK 500 ASP B 428 33.81 -86.79 REMARK 500 GLU B 530 36.41 -81.69 REMARK 500 PHE D 377 64.87 -151.69 REMARK 500 ASP D 428 39.75 -91.23 REMARK 500 THR D 470 42.18 -107.84 REMARK 500 LEU D 517 65.94 -112.37 REMARK 500 ASN D 528 65.32 -117.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 8YDP A 1 39 PDB 8YDP 8YDP 1 39 DBREF 8YDP B 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 DBREF 8YDP C 1 39 PDB 8YDP 8YDP 1 39 DBREF 8YDP D 333 526 UNP P0DTC2 SPIKE_SARS2 333 526 SEQADV 8YDP SER B 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASN B 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP SER B 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU B 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASN B 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP LEU B 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP TYR B 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP PHE B 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLN B 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLY B 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP SER B 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLY B 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP LEU B 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASN B 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASP B 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ILE B 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP PHE B 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU B 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ALA B 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLN B 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP LYS B 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ILE B 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU B 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP TRP B 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS B 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU B 562 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP SER D 527 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASN D 528 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP SER D 529 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU D 530 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASN D 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP LEU D 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP TYR D 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP PHE D 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLN D 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLY D 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP SER D 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 538 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 539 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 540 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 541 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 542 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 543 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 544 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 545 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 546 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 547 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLY D 548 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP LEU D 549 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASN D 550 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ASP D 551 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ILE D 552 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP PHE D 553 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU D 554 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ALA D 555 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLN D 556 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP LYS D 557 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP ILE D 558 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU D 559 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP TRP D 560 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP HIS D 561 UNP P0DTC2 EXPRESSION TAG SEQADV 8YDP GLU D 562 UNP P0DTC2 EXPRESSION TAG SEQRES 1 A 39 ASP LYS GLU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 A 39 ARG ARG LEU ASP GLU GLU GLY HIS ALA GLU ALA SER MET SEQRES 3 A 39 ARG VAL SER ASP LEU ILE TYR GLU PHE MET LYS LYS ASP SEQRES 1 B 230 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 B 230 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 B 230 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 B 230 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 B 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 B 230 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 B 230 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 B 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 B 230 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 B 230 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 B 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 B 230 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 B 230 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 B 230 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 B 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 B 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 B 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 B 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU SEQRES 1 C 39 ASP LYS GLU TRP ILE LEU GLN LYS ILE TYR GLU ILE MET SEQRES 2 C 39 ARG ARG LEU ASP GLU GLU GLY HIS ALA GLU ALA SER MET SEQRES 3 C 39 ARG VAL SER ASP LEU ILE TYR GLU PHE MET LYS LYS ASP SEQRES 1 D 230 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 D 230 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 D 230 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 D 230 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 D 230 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 D 230 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 D 230 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 D 230 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 D 230 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 D 230 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 D 230 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 D 230 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 D 230 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 D 230 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 D 230 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SER SEQRES 16 D 230 ASN SER GLU ASN LEU TYR PHE GLN GLY SER HIS HIS HIS SEQRES 17 D 230 HIS HIS HIS HIS HIS HIS HIS GLY LEU ASN ASP ILE PHE SEQRES 18 D 230 GLU ALA GLN LYS ILE GLU TRP HIS GLU HET NAG B 601 14 HET GOL B 602 6 HET GOL B 603 6 HET GOL B 604 6 HET GOL C 101 6 HET GOL D 601 6 HET NAG D 602 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NAG 2(C8 H15 N O6) FORMUL 6 GOL 5(C3 H8 O3) FORMUL 12 HOH *157(H2 O) HELIX 1 AA1 ASP A 1 GLU A 19 1 19 HELIX 2 AA2 HIS A 21 LYS A 37 1 17 HELIX 3 AA3 ASP B 364 ASN B 370 1 7 HELIX 4 AA4 SER B 383 ASP B 389 5 7 HELIX 5 AA5 ASP B 405 ILE B 410 5 6 HELIX 6 AA6 GLY B 416 ASN B 422 1 7 HELIX 7 AA7 GLY B 502 TYR B 505 5 4 HELIX 8 AA8 LYS C 2 GLU C 19 1 18 HELIX 9 AA9 HIS C 21 MET C 36 1 16 HELIX 10 AB1 PRO D 337 ASN D 343 1 7 HELIX 11 AB2 SER D 349 TRP D 353 5 5 HELIX 12 AB3 ASP D 364 ASN D 370 1 7 HELIX 13 AB4 THR D 385 ASP D 389 5 5 HELIX 14 AB5 ASP D 405 ILE D 410 5 6 HELIX 15 AB6 GLY D 416 ASN D 422 1 7 HELIX 16 AB7 SER D 438 SER D 443 1 6 HELIX 17 AB8 GLY D 502 TYR D 505 5 4 SHEET 1 AA1 5 ASN B 354 ILE B 358 0 SHEET 2 AA1 5 ASN B 394 ARG B 403 -1 O VAL B 395 N ILE B 358 SHEET 3 AA1 5 PRO B 507 GLU B 516 -1 O VAL B 512 N ASP B 398 SHEET 4 AA1 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA1 5 THR B 376 TYR B 380 -1 N TYR B 380 O GLY B 431 SHEET 1 AA2 3 CYS B 361 ALA B 363 0 SHEET 2 AA2 3 VAL B 524 GLY B 526 1 O CYS B 525 N ALA B 363 SHEET 3 AA2 3 CYS B 391 PHE B 392 -1 N PHE B 392 O VAL B 524 SHEET 1 AA3 2 LEU B 452 ARG B 454 0 SHEET 2 AA3 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA4 2 TYR B 473 GLN B 474 0 SHEET 2 AA4 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SHEET 1 AA5 5 ASN D 354 ILE D 358 0 SHEET 2 AA5 5 ASN D 394 ARG D 403 -1 O VAL D 395 N ILE D 358 SHEET 3 AA5 5 PRO D 507 GLU D 516 -1 O VAL D 512 N ASP D 398 SHEET 4 AA5 5 GLY D 431 ASN D 437 -1 N ILE D 434 O VAL D 511 SHEET 5 AA5 5 THR D 376 TYR D 380 -1 N TYR D 380 O GLY D 431 SHEET 1 AA6 3 CYS D 361 VAL D 362 0 SHEET 2 AA6 3 VAL D 524 CYS D 525 1 O CYS D 525 N CYS D 361 SHEET 3 AA6 3 CYS D 391 PHE D 392 -1 N PHE D 392 O VAL D 524 SHEET 1 AA7 2 LEU D 452 ARG D 454 0 SHEET 2 AA7 2 LEU D 492 SER D 494 -1 O GLN D 493 N TYR D 453 SHEET 1 AA8 2 TYR D 473 GLN D 474 0 SHEET 2 AA8 2 CYS D 488 TYR D 489 -1 O TYR D 489 N TYR D 473 SSBOND 1 CYS B 336 CYS B 361 1555 1555 2.03 SSBOND 2 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 3 CYS B 391 CYS B 525 1555 1555 2.03 SSBOND 4 CYS B 480 CYS B 488 1555 1555 2.04 SSBOND 5 CYS D 336 CYS D 361 1555 1555 2.03 SSBOND 6 CYS D 379 CYS D 432 1555 1555 2.03 SSBOND 7 CYS D 391 CYS D 525 1555 1555 2.03 SSBOND 8 CYS D 480 CYS D 488 1555 1555 2.03 LINK ND2 ASN B 343 C1 NAG B 601 1555 1555 1.45 LINK ND2 ASN D 343 C1 NAG D 602 1555 1555 1.44 CRYST1 72.295 72.295 100.210 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013832 0.007986 0.000000 0.00000 SCALE2 0.000000 0.015972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009979 0.00000 CONECT 360 567 CONECT 417 3808 CONECT 567 360 CONECT 707 1120 CONECT 797 1863 CONECT 1120 707 CONECT 1511 1568 CONECT 1568 1511 CONECT 1863 797 CONECT 2270 2477 CONECT 2327 3852 CONECT 2477 2270 CONECT 2617 3030 CONECT 2707 3773 CONECT 3030 2617 CONECT 3421 3478 CONECT 3478 3421 CONECT 3773 2707 CONECT 3808 417 3809 3819 CONECT 3809 3808 3810 3816 CONECT 3810 3809 3811 3817 CONECT 3811 3810 3812 3818 CONECT 3812 3811 3813 3819 CONECT 3813 3812 3820 CONECT 3814 3815 3816 3821 CONECT 3815 3814 CONECT 3816 3809 3814 CONECT 3817 3810 CONECT 3818 3811 CONECT 3819 3808 3812 CONECT 3820 3813 CONECT 3821 3814 CONECT 3822 3823 3824 CONECT 3823 3822 CONECT 3824 3822 3825 3826 CONECT 3825 3824 CONECT 3826 3824 3827 CONECT 3827 3826 CONECT 3828 3829 3830 CONECT 3829 3828 CONECT 3830 3828 3831 3832 CONECT 3831 3830 CONECT 3832 3830 3833 CONECT 3833 3832 CONECT 3834 3835 3836 CONECT 3835 3834 CONECT 3836 3834 3837 3838 CONECT 3837 3836 CONECT 3838 3836 3839 CONECT 3839 3838 CONECT 3840 3841 3842 CONECT 3841 3840 CONECT 3842 3840 3843 3844 CONECT 3843 3842 CONECT 3844 3842 3845 CONECT 3845 3844 CONECT 3846 3847 3848 CONECT 3847 3846 CONECT 3848 3846 3849 3850 CONECT 3849 3848 CONECT 3850 3848 3851 CONECT 3851 3850 CONECT 3852 2327 3853 3863 CONECT 3853 3852 3854 3860 CONECT 3854 3853 3855 3861 CONECT 3855 3854 3856 3862 CONECT 3856 3855 3857 3863 CONECT 3857 3856 3864 CONECT 3858 3859 3860 3865 CONECT 3859 3858 CONECT 3860 3853 3858 CONECT 3861 3854 CONECT 3862 3855 CONECT 3863 3852 3856 CONECT 3864 3857 CONECT 3865 3858 MASTER 317 0 7 17 24 0 0 6 4018 4 76 42 END